Trust-MDx - Trustworthy Decision Limits for Multiplexed Diagnostics

Lead Research Organisation: Imperial College London
Department Name: Bioengineering

Abstract

I propose a fundamentally I propose a fundamentally new mathematical framework to leverage recent developments in ultrasensitive multiplex diagnostic testing. Early and accurate disease diagnosis has a tremendous influence on patient treatment possibilities, survival rates, and outbreak prevention. It allows for timely and relevant interference by the healthcare system and more effective allocation of medical resources.

In recent years there has been a large amount of effort directed at improving test sensitivity by material scientists. This led to innovative developments utilising various nanoparticles to enhance biomarker signals. The recent use of surface-enhanced Raman spectroscopy has improved the sensitivity of diagnostic tests while allowing for multiplex detection. Unfortunately, the enormous recent developments by material scientists have not been accompanied by similar advances in mathematical modelling, which is why the mathematical framework underpinning the diagnostic tests relies on ineffective century-old modelling techniques.

Common problems in biomarker detection pertain to integrating a single Ramen band unique to the biomarker of interest. This is very costly in terms of sensitivity, which renders the recent developments by material scientists ineffective. Through latent variable-based models, I will increase the sensitivity of multiplex diagnostic tests. This way of modelling will, however, introduce complex sample-specific uncertainty structures, which must be precisely estimated to facilitate useful decision-making based on multiplex diagnostic tests. I mitigate this by utilizing machine-learning principles in a form of gaussian processes to learn the complex uncertainty structures.

This will constitute new mathematical theories and practices to facilitate decision-making based on multiplexed diagnostic tests. I will improve the sensitivity and specificity of multiplexed diagnostic tests, and hence enable precise and early disease diagnosis.

Publications

10 25 50
 
Description estimation of reliable confidence intervals in multiplex diagnostics
Exploitation Route Once published can be used to improve readability of for multiplex medical diagnostic
Sectors Healthcare

 
Description Quantum Biomedical Sensing Research Hub (Q-BIOMED): Delivering the quantum enabled future of early disease diagnosis and treatment
Amount £20,961,490 (GBP)
Organisation United Kingdom Research and Innovation 
Sector Public
Country United Kingdom
Start 12/2024 
End 11/2029
 
Description Streamlining the development of lateral flow immunoassays to accelerate the path to market
Amount £42,725 (GBP)
Organisation University of Oxford 
Sector Academic/University
Country United Kingdom
Start 04/2024 
End 10/2025
 
Description Utilising AI tools for the rapid design of highly specific binders for lateral flow immunoassays
Amount £36,988 (GBP)
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 03/2025 
End 08/2025
 
Title Gaussian Process to model prediction errors in a latent space 
Description I have developed a mathematical framework based on Gaussian Process Regression to estimate sample specific prediction uncertainties of analyses in multiplex systems. 
Type Of Material Data analysis technique 
Year Produced 2024 
Provided To Others? No  
Impact This tool makes it possible to estimate reliable confidence intervals around predictions of a biomarker from spectroscopic measurements. 
 
Title model of prediction uncertainties in multiplex systems 
Description I have developed a mathematical framework based on Gaussian Process Regression to estimate sample specific prediction uncertainties of analyses in multiplex systems. 
Type Of Material Computer model/algorithm 
Year Produced 2024 
Provided To Others? No  
Impact this tool makes it possible to estimate reliable confidence intervals around predictions of a biomarker from spectroscopic measurements 
 
Title BiasVarianceMapper 
Description open-source software for quantifying observation-specific uncertainties (bias and variance) in latent variable regression models using Gaussian processes 
Type Of Technology Software 
Year Produced 2024 
Impact no impact yet