Trust-MDx - Trustworthy Decision Limits for Multiplexed Diagnostics
Lead Research Organisation:
Imperial College London
Department Name: Bioengineering
Abstract
I propose a fundamentally I propose a fundamentally new mathematical framework to leverage recent developments in ultrasensitive multiplex diagnostic testing. Early and accurate disease diagnosis has a tremendous influence on patient treatment possibilities, survival rates, and outbreak prevention. It allows for timely and relevant interference by the healthcare system and more effective allocation of medical resources.
In recent years there has been a large amount of effort directed at improving test sensitivity by material scientists. This led to innovative developments utilising various nanoparticles to enhance biomarker signals. The recent use of surface-enhanced Raman spectroscopy has improved the sensitivity of diagnostic tests while allowing for multiplex detection. Unfortunately, the enormous recent developments by material scientists have not been accompanied by similar advances in mathematical modelling, which is why the mathematical framework underpinning the diagnostic tests relies on ineffective century-old modelling techniques.
Common problems in biomarker detection pertain to integrating a single Ramen band unique to the biomarker of interest. This is very costly in terms of sensitivity, which renders the recent developments by material scientists ineffective. Through latent variable-based models, I will increase the sensitivity of multiplex diagnostic tests. This way of modelling will, however, introduce complex sample-specific uncertainty structures, which must be precisely estimated to facilitate useful decision-making based on multiplex diagnostic tests. I mitigate this by utilizing machine-learning principles in a form of gaussian processes to learn the complex uncertainty structures.
This will constitute new mathematical theories and practices to facilitate decision-making based on multiplexed diagnostic tests. I will improve the sensitivity and specificity of multiplexed diagnostic tests, and hence enable precise and early disease diagnosis.
In recent years there has been a large amount of effort directed at improving test sensitivity by material scientists. This led to innovative developments utilising various nanoparticles to enhance biomarker signals. The recent use of surface-enhanced Raman spectroscopy has improved the sensitivity of diagnostic tests while allowing for multiplex detection. Unfortunately, the enormous recent developments by material scientists have not been accompanied by similar advances in mathematical modelling, which is why the mathematical framework underpinning the diagnostic tests relies on ineffective century-old modelling techniques.
Common problems in biomarker detection pertain to integrating a single Ramen band unique to the biomarker of interest. This is very costly in terms of sensitivity, which renders the recent developments by material scientists ineffective. Through latent variable-based models, I will increase the sensitivity of multiplex diagnostic tests. This way of modelling will, however, introduce complex sample-specific uncertainty structures, which must be precisely estimated to facilitate useful decision-making based on multiplex diagnostic tests. I mitigate this by utilizing machine-learning principles in a form of gaussian processes to learn the complex uncertainty structures.
This will constitute new mathematical theories and practices to facilitate decision-making based on multiplexed diagnostic tests. I will improve the sensitivity and specificity of multiplexed diagnostic tests, and hence enable precise and early disease diagnosis.
Organisations
People |
ORCID iD |
Molly Stevens (Principal Investigator) |
Description | estimation of reliable confidence intervals in multiplex diagnostics |
Exploitation Route | Once published can be used to improve readability of for multiplex medical diagnostic |
Sectors | Healthcare |
Description | Quantum Biomedical Sensing Research Hub (Q-BIOMED): Delivering the quantum enabled future of early disease diagnosis and treatment |
Amount | £20,961,490 (GBP) |
Organisation | United Kingdom Research and Innovation |
Sector | Public |
Country | United Kingdom |
Start | 12/2024 |
End | 11/2029 |
Description | Streamlining the development of lateral flow immunoassays to accelerate the path to market |
Amount | £42,725 (GBP) |
Organisation | University of Oxford |
Sector | Academic/University |
Country | United Kingdom |
Start | 04/2024 |
End | 10/2025 |
Description | Utilising AI tools for the rapid design of highly specific binders for lateral flow immunoassays |
Amount | £36,988 (GBP) |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2025 |
End | 08/2025 |
Title | Gaussian Process to model prediction errors in a latent space |
Description | I have developed a mathematical framework based on Gaussian Process Regression to estimate sample specific prediction uncertainties of analyses in multiplex systems. |
Type Of Material | Data analysis technique |
Year Produced | 2024 |
Provided To Others? | No |
Impact | This tool makes it possible to estimate reliable confidence intervals around predictions of a biomarker from spectroscopic measurements. |
Title | model of prediction uncertainties in multiplex systems |
Description | I have developed a mathematical framework based on Gaussian Process Regression to estimate sample specific prediction uncertainties of analyses in multiplex systems. |
Type Of Material | Computer model/algorithm |
Year Produced | 2024 |
Provided To Others? | No |
Impact | this tool makes it possible to estimate reliable confidence intervals around predictions of a biomarker from spectroscopic measurements |
Title | BiasVarianceMapper |
Description | open-source software for quantifying observation-specific uncertainties (bias and variance) in latent variable regression models using Gaussian processes |
Type Of Technology | Software |
Year Produced | 2024 |
Impact | no impact yet |