Capacity building in single cell inflammation discovery: developing the next generation of scientists
Lead Research Organisation:
University of Manchester
Department Name: UNLISTED
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
Technical Summary
Objective: To advance national and international expertise in human single cell analysis by awarding Discovery Fellowships to early career academics who focus on specific cell subsets in health and disease at mucosal barriers.
Our vision is to become an international leader in understanding cell boundaries in human health and disease, for the benefit of patients in Manchester and beyond. The Fellows will ultimately form part of a wider bid for a Centre of Excellence in inflammation.
Rationale: Cellular heterogeneity leads to variability in response of otherwise identical cells to the same stimulus. Examining a single population of cells using pre-defined criteria essentially averages their true complexity. This impairs an understanding of immune health and disease and strategies to alleviate inflammation. Single cell analysis has emerged as the next frontier, removing pre-conceptions on cell phenotype and allowing unbiased definition and discovery.
There are few early academics in this speciality, particularly in the local area. We are ideally placed to support early career fellows and projects containing high risk basic discovery research that is currently precompetitive for external support. We have precedence in recruiting excellent young investigators that rapidly succeed in developing independence.
Approach: Discovery Fellowships will be advertised and successful applicants provided with competitive start-up funds. A call for projects will be advertised internally. They will be embedded in the MRC-funded single cell research centre and aligned to the Manchester Collaborative Centre for inflammation Research that has strong links with GSK and AZ. Ultimately they will demonstrate success in competitive funding, with the security of institutional commitment for a further 12 months.
This approach will prime novel interactions with existing academics, evolve expertise across the North and transform discovery of new medicines and disease mechanisms.
Our vision is to become an international leader in understanding cell boundaries in human health and disease, for the benefit of patients in Manchester and beyond. The Fellows will ultimately form part of a wider bid for a Centre of Excellence in inflammation.
Rationale: Cellular heterogeneity leads to variability in response of otherwise identical cells to the same stimulus. Examining a single population of cells using pre-defined criteria essentially averages their true complexity. This impairs an understanding of immune health and disease and strategies to alleviate inflammation. Single cell analysis has emerged as the next frontier, removing pre-conceptions on cell phenotype and allowing unbiased definition and discovery.
There are few early academics in this speciality, particularly in the local area. We are ideally placed to support early career fellows and projects containing high risk basic discovery research that is currently precompetitive for external support. We have precedence in recruiting excellent young investigators that rapidly succeed in developing independence.
Approach: Discovery Fellowships will be advertised and successful applicants provided with competitive start-up funds. A call for projects will be advertised internally. They will be embedded in the MRC-funded single cell research centre and aligned to the Manchester Collaborative Centre for inflammation Research that has strong links with GSK and AZ. Ultimately they will demonstrate success in competitive funding, with the security of institutional commitment for a further 12 months.
This approach will prime novel interactions with existing academics, evolve expertise across the North and transform discovery of new medicines and disease mechanisms.
People |
ORCID iD |
Publications
Bertuzzi M
(2018)
Anti-Aspergillus Activities of the Respiratory Epithelium in Health and Disease.
in Journal of fungi (Basel, Switzerland)
Bertuzzi M
(2021)
Single-Cell Analysis of Fungal Uptake in Cultured Airway Epithelial Cells Using Differential Fluorescent Staining and Imaging Flow Cytometry.
in Methods in molecular biology (Clifton, N.J.)
Bertuzzi M
(2019)
Microbial uptake by the respiratory epithelium: outcomes for host and pathogen.
in FEMS microbiology reviews
Blandin Knight S
(2017)
Progress and prospects of early detection in lung cancer
in Open Biology
Grabiec A
(2018)
Axl and MerTK receptor tyrosine kinases maintain human macrophage efferocytic capacity in the presence of viral triggers
in European Journal of Immunology
Grabiec AM
(2017)
Diminished airway macrophage expression of the Axl receptor tyrosine kinase is associated with defective efferocytosis in asthma.
in The Journal of allergy and clinical immunology
Grabiec AM
(2016)
The role of airway macrophages in apoptotic cell clearance following acute and chronic lung inflammation.
in Seminars in immunopathology
Hussell T
(2016)
Heterologous immunity meets tissue-specific training.
in Nature reviews. Immunology
Hussell T
(2016)
Immunopathology of lung diseases: introduction for the special issue
in Seminars in Immunopathology
Hussell T
(2016)
TLR vaccine adjuvants: closing the stable door before novel influenza strains bolt?
in Immunology and cell biology
Description | ANTIFUNGAL POTENCY OF THE AIRWAY EPITHELIUM IN HEALTH AND DISEASE |
Amount | € 20,000 (EUR) |
Organisation | European Society of Clinical Microbiology and Infectious Diseases (ESCMID) |
Sector | Charity/Non Profit |
Country | Switzerland |
Start | 04/2019 |
End | 03/2020 |
Description | Antifungal potency of the respiratory epithelium |
Amount | £12,000 (GBP) |
Organisation | Fungal Infection Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2017 |
End | 12/2019 |
Description | December 2016 - November 2021. . Senior Investigator Award in Science, "Pathogenic airway macrophage adaptation in the chronically inflamed lung". |
Amount | £1,728,302 (GBP) |
Funding ID | 202865/Z/16/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 12/2016 |
End | 11/2021 |
Description | Effectors of tissue invasion in Aspergillus fumigatus, the major fungal pathogen of human lungs |
Amount | £613,140 (GBP) |
Funding ID | MR/S001824/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 10/2018 |
End | 09/2021 |
Description | Molecular basis of fungal tissue invasion |
Amount | £30,000 (GBP) |
Organisation | Chelsea and Westminster Health Charity |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 07/2017 |
End | 06/2019 |
Title | Isolating rare cells for single cell omics |
Description | • New protocols for harvest and culture of primary human pneumocytes for analysis by imaging flow cytometry |
Type Of Material | Biological samples |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | In progress |
Title | Method for separating out Th17 cells from human PBMCs |
Description | Method for separating out Th17 cells from human PBMCs |
Type Of Material | Biological samples |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | Ability to pull out rare cells for single cell omics |
Title | Single cell RNA-seq |
Description | Single cell RNA-seq libraries for six samples were prepared using the Chromium Single Cell Controller to obtain a target cell recovery of 5,000 cells. Final libraries were sequenced on an Illumina HiSeq 4000 to yield approximately 400 million reads per sample (80,000 reads per cell). Raw sequence reads were aligned against the human reference (GENCODE Human Release 26 (GRCh38.p10)) using the Cell Ranger™ 2.1.0 pipeline (10X Genomics). Further quality control and clustering was performed using Seurat - R toolkit for single cell genomics 2.3.0. |
Type Of Material | Biological samples |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | Refinement of a technique that can be more widely used and streamlined for others wishing to do this sort of analysis. |
Description | Development of targets |
Organisation | MRC-Technology |
Country | United Kingdom |
Sector | Private |
PI Contribution | Using single cell sequencing technology we discovered potential therapeutic targets on airway macrophages that are of interest to MRCT |
Collaborator Contribution | The partners will accept an application to take these targets forward |
Impact | None yet |
Start Year | 2017 |
Description | Inflammation; the good and the bad |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | A research activity station explaining how the immune system works to a lay audience - aimed at families. It has been presented at multiple events including Science Spectacular and the Body Experience organised by the University of Manchester. |
Year(s) Of Engagement Activity | 2017,2018 |
Description | Killer Fungus Event at Manchester Science Festival |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | A 40-strong team of clinicians and scientists from the Universities of Aberdeen and Manchester, University Hospital South Manchester, National Aspergillosis Centre and Mycology Reference Laboratory Manchester, delivered the 'Killer Fungus' event at the Manchester Museum of Science and Industry in October. Visited by more than 1300 members of the public in a single day, the exhibit utilised the entirety of the enormous MOSI Power Hall to deliver two parallel events depicting the breadth, wonder and deadly nature of fungal contributions to life, and death, on Earth. New to the Killer Fungus exhibit for 2018, an app-based role playing game 'Outbreak' pitched 38 teams of impromptu scientists against a deadly killer fungus to resolve a mystery illness sweeping Manchester. Arriving to breaking news from the BBC of a mystery illness causing fatal meningitis amongst the Greater Manchester population, teams were immersed into a battle, alongside real-life clinicians and scientists, to collect field samples, witness the effects of the disease on human patients, and examine clinical data and pathogen genetic code and to work against the clock to crack the source of the Outbreak. At a complementary Platform for Investigation exhibit, visitors learned about fungi and the diseases they cause by playing computer games, viewed microscopic examples of fungal pathogens colonising agar plates and lung tissue, and made Play Dough models of innate immune cells attacking fungi. |
Year(s) Of Engagement Activity | 2017 |
URL | http://www.killerfungus.org |
Description | The Beautiful Cure |
Form Of Engagement Activity | A magazine, newsletter or online publication |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Professor Daniel David published ' the Beautiful Cure'. This explained Immunology research and the power of the immune system to a lay audience. |
Year(s) Of Engagement Activity | 2018,2019 |