Translational Applications of New Insights into Immunoreceptor Signalling
Lead Research Organisation:
University of Oxford
Department Name: UNLISTED
Abstract
The aim of the T-cell biology group, in its translational work, is to develop new antibodies for use as therapies in autoimmune diseases. To achieve this we are working towards an understanding of the biology of the leukocyte cell surface, and to apply this understanding to the development of new drug-like antibodies. Leukocytes are white blood cells that are involved in defending the body against infectious disease and foreign materials found in the blood and lymphatic circulatory systems. The surface of leukocytes is covered in protein molecules, some of which are receptors that interact with fragments of specific foreign proteins either from infectious agents or other foreign materials, such as allergens, or, as in the case of some autoimmune diseases, to self-antigens. When the receptors interact with their target molecules, we propose that they undergo a reorganization that causes them to trigger immune response pathways. If these pathways are triggered inappropriately, then autoimmune disease can develop. The process of receptor triggering by native ligands can be mimicked with antibodies, which means that, when we fully understand the process, we may be in a position to design new antibody-based receptor agonists for use in the treatment of autoimmune diseases.
Technical Summary
Goals To understand the cell biology of the leukocyte surface and to use the insights to alter the behaviour of leukocytes in autoimmune settings. The T-cell biology group is working towards an understanding of the biology of the leukocyte surface and the mechanism of receptor triggering, both for its intrinsic cell biological interest and as the basis for developing new types of immunotherapy. For the last several years we have focused on understanding the composition of the T-cell surface and how receptors expressed there are organized and then ‘triggered’ by ligand binding (1-3). The expression of transcripts encoding known cell surface molecules by a human CD8+ T-cell clone was characterized by a transcriptomic approach (SAGE) and the results suggested that existing models of receptor triggering are unlikely to be wrong because key components remain to be discovered (1). Determination of an anti-CD28 superagonistic antibody Fab fragment bound to CD28 (2) provided insights as to how antibody superagonists work and incorporated CD28 into the family of receptors triggered via kinase/phosphatase segregation – a family that includes the T cell receptor (for a review see reference 3). Assembly of proteins expressed at the cell surface has been studied by bioluminescence resonance energy transfer (BRET), which has been used to characterize the quaternary structures of cell surface molecules. Our new experimental framework for detecting transfected receptor dimers revealed that most proteins expressed at the cell surface are likely to be monomers, undermining the notion that important groups of receptors inexorably form dimers (4). Together with our collaborators we have established a new method for studying the organization of native receptor complexes (two-colour coincidence detection). Analysis of the composition of protein complexes on the surface of live T cells has shown that the TCR is monovalent (5). Recent work has focused on determination of the stoichiometries of each key component of the T cell triggering apparatus – MHC class II, CD4, CD45 – and these too have been shown to be monovalent (6). Future research plans Future work will concentrate on understanding receptor triggering by native ligands and by antibodies and to use this knowledge in the development of new receptor agonist-based therapeutic antibodies – for example against inhibitory receptors such as PD-1 that suppress immune responses both in vivo and in vitro. A key objective is to target molecules that may offer new opportunities to intervene in autoimmunity. References: (1) Evans et al 2003 Immunity 19: 213 (2) Evans 2005 Nature Immmunol 6: 271 (3) Davis and van der Merwe 2006. Nature Immunol 7: 803 (4) James et al. 2006 Nature Methods 3: 1001 (5) James et al 2007 Proc Natl Acad Sci USA 104: 17662 (6) James et al. 2011 J Biol Chem. 2011 16:31993
People |
ORCID iD |
Simon Davis (Principal Investigator) |
Publications
Brameshuber M
(2018)
Monomeric TCRs drive T cell antigen recognition.
in Nature immunology
Chouliara M
(2021)
Single-cell measurements of two-dimensional binding affinity across cell contacts.
in Biophysical journal
Davis SJ
(2020)
T-Cell Receptor Ligands: Every which Way They Can.
in Biophysical journal
Eggeling C
(2017)
Macrophages: micromanagers of antagonistic signaling nanoclusters.
in The Journal of cell biology
Felce JH
(2017)
Receptor Quaternary Organization Explains G Protein-Coupled Receptor Family Structure.
in Cell reports
Felce JH
(2018)
Single-Molecule Analysis of G Protein-Coupled Receptor Stoichiometry: Approaches and Limitations.
in Trends in pharmacological sciences
Felce JH
(2018)
CD45 exclusion- and cross-linking-based receptor signaling together broaden FceRI reactivity.
in Science signaling
Fernandes R
(2019)
A cell topography-based mechanism for ligand discrimination by the T cell receptor
in Proceedings of the National Academy of Sciences
Fritzsche M
(2017)
Cytoskeletal actin dynamics shape a ramifying actin network underpinning immunological synapse formation.
in Science advances
Jenkins E
(2018)
Reconstitution of immune cell interactions in free-standing membranes.
in Journal of cell science
Related Projects
Project Reference | Relationship | Related To | Start | End | Award Value |
---|---|---|---|---|---|
MC_UU_00008/1 | 01/04/2017 | 31/03/2023 | £2,738,000 | ||
MC_UU_00008/2 | Transfer | MC_UU_00008/1 | 01/04/2017 | 31/03/2023 | £1,821,000 |
MC_UU_00008/3 | Transfer | MC_UU_00008/2 | 01/04/2017 | 31/03/2023 | £2,257,000 |
MC_UU_00008/4 | Transfer | MC_UU_00008/3 | 01/04/2017 | 31/03/2023 | £1,459,000 |
MC_UU_00008/5 | Transfer | MC_UU_00008/4 | 01/04/2017 | 31/03/2023 | £1,346,000 |
MC_UU_00008/6 | Transfer | MC_UU_00008/5 | 01/04/2017 | 31/03/2023 | £1,660,000 |
MC_UU_00008/7 | Transfer | MC_UU_00008/6 | 01/04/2017 | 31/03/2023 | £401,000 |
MC_UU_00008/8 | Transfer | MC_UU_00008/7 | 01/04/2017 | 31/03/2024 | £2,876,000 |
MC_UU_00008/9 | Transfer | MC_UU_00008/8 | 01/04/2017 | 31/03/2023 | £2,568,000 |
MC_UU_00008/10 | Transfer | MC_UU_00008/9 | 01/04/2017 | 31/03/2023 | £2,060,000 |
MC_UU_00008/11 | Transfer | MC_UU_00008/10 | 01/04/2017 | 31/03/2023 | £1,477,000 |
Description | Cell Type-Specific Analysis of Immune Checkpoint Signalling Networks Underpinning Cancer Immunotherapy |
Amount | £1,039,355 (GBP) |
Funding ID | MR/W025507/1 |
Organisation | EMBL European Bioinformatics Institute (EMBL - EBI) |
Sector | Academic/University |
Country | United Kingdom |
Start | 01/2023 |
End | 01/2027 |
Description | Decision-making by lymphocytes |
Amount | £2,400,000 (GBP) |
Funding ID | 207547/Z/17/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2017 |
End | 09/2022 |
Description | How tumour-cell killing by T cells is initiated |
Amount | £304,908 (GBP) |
Funding ID | DRCCIPA\100010 |
Organisation | Cancer Research UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 02/2021 |
End | 01/2024 |
Description | Analysis of the resting organization of T cell signaling molecules |
Organisation | University of Oxford |
Department | Oxford University Clinical Academic Graduate School (OUCAGS) |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have provided the biological know-how and rationale at the heart of the experiments. |
Collaborator Contribution | Our collaborators are expert in the use of state of the art super-resolution imaging tools, which have allowed us to interrogate the organization of signaling proteins in T cells. |
Impact | Publications: Spark A, Kitching A, Esteban-Ferrer D, Handa A, Carr AR, Needham LM, Ponjavic A, Santos AM, McColl J, Leterrier C, Davis SJ, Henriques R, Lee SF. vLUME: 3D virtual reality for single-molecule localization microscopy. Nat Methods. 2020 Nov;17(11):1097-1099. doi: 10.1038/s41592-020-0962-1. Epub 2020 Oct 12. PMID: 33046895. Santos AM, Ponjavic A, Fritzsche M, Fernandes RA, de la Serna JB, Wilcock MJ, Schneider F, Urbancic I, McColl J, Anzilotti C, Ganzinger KA, Aßmann M, Depoil D, Cornall RJ, Dustin ML, Klenerman D, Davis SJ, Eggeling C, Lee SF. Capturing resting T cells: the perils of PLL. Nat Immunol. 2018 Mar;19(3):203-205. doi: 10.1038/s41590-018-0048-8. Epub 2018 Feb 23. PMID: 29476188. Felce JH, Latty SL, Knox RG, Mattick SR, Lui Y, Lee SF, Klenerman D, Davis SJ. Receptor Quaternary Organization Explains G Protein-Coupled Receptor Family Structure. Cell Rep. 2017 Sep 12;20(11):2654-2665. doi: 10.1016/j.celrep.2017.08.072. PMID: 28903045; PMCID: PMC5608970. Kulenkampff K, Lippert AH, McColl J, Santos AM, Ponjavic A, Jenkins E, Humphrey J, Winkel A, Franze K, Lee SF, Davis SJ, Klenerman D. The Costs of Close Contacts: Visualizing the Energy Landscape of Cell Contacts at the Nanoscale. Biophys J. 2020 Mar 24;118(6):1261-1269. doi: 10.1016/j.bpj.2020.01.019. Epub 2020 Jan 28. PMID: 32075748; PMCID: PMC7091464. Latty SL, Felce JH, Weimann L, Lee SF, Davis SJ, Klenerman D. Referenced Single-Molecule Measurements Differentiate between GPCR Oligomerization States. Biophys J. 2015 Nov 3;109(9):1798-806. doi: 10.1016/j.bpj.2015.09.004. PMID: 26536257; PMCID: PMC4643199. Ponjavic A, McColl J, Carr AR, Santos AM, Kulenkampff K, Lippert A, Davis SJ, Klenerman D, Lee SF. Single-Molecule Light-Sheet Imaging of Suspended T Cells. Biophys J. 2018 May 8;114(9):2200-2211. doi: 10.1016/j.bpj.2018.02.044. PMID: 29742413; PMCID: PMC5961759. |
Start Year | 2012 |
Description | In vivo analysis of antibody superagonists |
Organisation | University of Oxford |
Department | Nuffield Department of Experimental Medicine |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have generated potentially therapeutic antibodies and genetically engineered mice for the analysis of the effects of these antibodies on the mouse immune system. |
Collaborator Contribution | Professor Richard Cornall is analysing the effects of the antibodies on the immune responses of these mice |
Impact | One outstanding PhD thesis. Publication: Paluch C, Santos AM, Anzilotti C, Cornall RJ, Davis SJ. Immune Checkpoints as Therapeutic Targets in Autoimmunity. Front Immunol. 2018 Oct 8;9:2306. doi: 10.3389/fimmu.2018.02306. PMID: 30349540; PMCID: PMC6186808. The work done under this collaboration led to the foundation of MiroBio (S.J. Davis, R.J. Cornall and C. Paluch, founders). |
Start Year | 2009 |
Description | Proteo-genetic analysis of immune checkpoint signaling |
Organisation | EMBL European Bioinformatics Institute (EMBL - EBI) |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We contributed significantly to designing the programme and writing the grant application. The programme of work has just initiated; a post-doctoral scientist, Joe Clarke joined us in January. |
Collaborator Contribution | Our partners are preparing tools and reagents, and the bioinformatic underpinnings for this study. |
Impact | There have been no outputs or outcomes as of yet. |
Start Year | 2023 |
Description | Single molecule analysis of T-cell activation |
Organisation | University of Cambridge |
Department | Faculty of Physics & Chemistry |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have proposed a theory of receptor triggering in T-cells that is amenable to analysis by single molecule and super-resolution imaging. We help design experiments and prepare the cell lines and reagents required to undertake the imaging experiments. We write the papers. |
Collaborator Contribution | Professor Klenerman's laboratory has been testing the theory using single molecule and super-resolution imaging. |
Impact | Publications: 1: Chen KY, Jenkins E, Kv?rbel M, Ponjavic A, Lippert AH, Santos AM, Ashman N, O'Brien-Ball C, McBride J, Klenerman D, Davis SJ. Trapping or slowing the diffusion of T cell receptors at close contacts initiates T cell signaling. Proc Natl Acad Sci U S A. 2021 Sep 28;118(39):e2024250118. doi: 10.1073/pnas.2024250118. PMID: 34526387; PMCID: PMC8488633. 2: Lippert AH, Dimov IB, Winkel AK, Humphrey J, McColl J, Chen KY, Santos AM, Jenkins E, Franze K, Davis SJ, Klenerman D. Soft Polydimethylsiloxane-Supported Lipid Bilayers for Studying T Cell Interactions. Biophys J. 2021 Jan 5;120(1):35-45. doi: 10.1016/j.bpj.2020.11.021. Epub 2020 Nov 26. PMID: 33248128; PMCID: PMC7820804. 3: Kulenkampff K, Lippert AH, McColl J, Santos AM, Ponjavic A, Jenkins E, Humphrey J, Winkel A, Franze K, Lee SF, Davis SJ, Klenerman D. The Costs of Close Contacts: Visualizing the Energy Landscape of Cell Contacts at the Nanoscale. Biophys J. 2020 Mar 24;118(6):1261-1269. doi: 10.1016/j.bpj.2020.01.019. Epub 2020 Jan 28. PMID: 32075748; PMCID: PMC7091464. 4: Fernandes RA, Ganzinger KA, Tzou JC, Jv?nsson P, Lee SF, Palayret M, Santos AM, Carr AR, Ponjavic A, Chang VT, Macleod C, Lagerholm BC, Lindsay AE, Dushek O, Tilevik A, Davis SJ, Klenerman D. A cell topography-based mechanism for ligand discrimination by the T cell receptor. Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14002-14010. doi: 10.1073/pnas.1817255116. Epub 2019 Jun 20. PMID: 31221762; PMCID: PMC6628812. 5: Ponjavic A, McColl J, Carr AR, Santos AM, Kulenkampff K, Lippert A, Davis SJ, Klenerman D, Lee SF. Single-Molecule Light-Sheet Imaging of Suspended T Cells. Biophys J. 2018 May 8;114(9):2200-2211. doi: 10.1016/j.bpj.2018.02.044. PMID: 29742413; PMCID: PMC5961759. 6: Santos AM, Ponjavic A, Fritzsche M, Fernandes RA, de la Serna JB, Wilcock MJ, Schneider F, Urbanƒçiƒç I, McColl J, Anzilotti C, Ganzinger KA, Avümann M, Depoil D, Cornall RJ, Dustin ML, Klenerman D, Davis SJ, Eggeling C, Lee SF. Capturing resting T cells: the perils of PLL. Nat Immunol. 2018 Mar;19(3):203-205. doi: 10.1038/s41590-018-0048-8. Epub 2018 Feb 23. PMID: 29476188. 7: Jonsson P, Southcombe JH, Santos AM, Huo J, Fernandes RA, McColl J, Lever M, Evans EJ, Hudson A, Chang VT, Hanke T, Godkin A, Dunne PD, Horrocks MH, Palayret M, Screaton GR, Petersen J, Rossjohn J, Fugger L, Dushek O, Xu XN, Davis SJ, Klenerman D. Remarkably low affinity of CD4/peptide-major histocompatibility complex class II protein interactions. Proc Natl Acad Sci U S A. 2016 May 17;113(20):5682-7. doi: 10.1073/pnas.1513918113. Epub 2016 Apr 25. PMID: 27114505; PMCID: PMC4878507. 8: Chang VT, Fernandes RA, Ganzinger KA, Lee SF, Siebold C, McColl J, Jv?nsson P, Palayret M, Harlos K, Coles CH, Jones EY, Lui Y, Huang E, Gilbert RJC, Klenerman D, Aricescu AR, Davis SJ. Initiation of T cell signaling by CD45 segregation at 'close contacts'. Nat Immunol. 2016 May;17(5):574-582. doi: 10.1038/ni.3392. Epub 2016 Mar 21. PMID: 26998761; PMCID: PMC4839504. 9: Klenerman D, Shevchuk A, Novak P, Korchev YE, Davis SJ. Imaging the cell surface and its organization down to the level of single molecules. Philos Trans R Soc Lond B Biol Sci. 2012 Dec 24;368(1611):20120027. doi: 10.1098/rstb.2012.0027. PMID: 23267181; PMCID: PMC3538430. 10: James JR, McColl J, Oliveira MI, Dunne PD, Huang E, Jansson A, Nilsson P, Sleep DL, Gonvßalves CM, Morgan SH, Felce JH, Mahen R, Fernandes RA, Carmo AM, Klenerman D, Davis SJ. The T cell receptor triggering apparatus is composed of monovalent or monomeric proteins. J Biol Chem. 2011 Sep 16;286(37):31993-2001. doi: 10.1074/jbc.M111.219212. Epub 2011 Jul 13. PMID: 21757710; PMCID: PMC3173209. 11: Klenerman D, Korchev YE, Davis SJ. Imaging and characterisation of the surface of live cells. Curr Opin Chem Biol. 2011 Oct;15(5):696-703. doi: 10.1016/j.cbpa.2011.04.001. Epub 2011 Apr 30. PMID: 21536476. 12: van der Merwe PA, Dunne PD, Klenerman D, Davis SJ. Taking T cells beyond the diffraction limit. Nat Immunol. 2010 Jan;11(1):51-2. doi: 10.1038/ni0110-51. PMID: 20016513. 13: Dunne PD, Fernandes RA, McColl J, Yoon JW, James JR, Davis SJ, Klenerman D. DySCo: quantitating associations of membrane proteins using two-color single- molecule tracking. Biophys J. 2009 Aug 19;97(4):L5-7. doi: 10.1016/j.bpj.2009.05.046. PMID: 19686638; PMCID: PMC2726305. 14: James JR, White SS, Clarke RW, Johansen AM, Dunne PD, Sleep DL, Fitzgerald WJ, Davis SJ, Klenerman D. Single-molecule level analysis of the subunit composition of the T cell receptor on live T cells. Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17662-7. doi: 10.1073/pnas.0700411104. Epub 2007 Oct 30. PMID: 17971442; PMCID: PMC2077052. |
Title | PD-1 "knock-in" mouse |
Description | We have generated a "humanised" knock-in mouse expressing human PD-1, which is useful for studying the the anti-tumour effects of therapeutic reagents targeting human PD-1. |
IP Reference | |
Protection | Trade Mark |
Year Protection Granted | |
Licensed | Yes |
Impact | The mouse is in heavy use in our own research on receptor agonists, and has been out-licensed for use by numerous biotechs and pharma. |
Company Name | MIROBIO LTD |
Description | The company is producing new treatments for autoimmunigty based on insights we have obtained into signaling by lymphocytes. |
Year Established | 2018 |
Impact | The company initiated its first clinical trial in August 2022. It was purchased by Gilead Sciences in August 2022. |
Website | http://www.mirobio.com/ |
Description | A teaching tool (animation) for use in schools |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Schools |
Results and Impact | We have generated a short (~2 min) animation showing the basic principles of the organization and functions of the immune system, intended principally for junior high school students. The work was funded via specific funding awarded to me by the Wellcome Trust. |
Year(s) Of Engagement Activity | 2018,2019 |
URL | https://www.youtube.com/watch?v=1TVJJ0HGOj4 |
Description | Science festival stall holder |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Science festival held at the Westgate Shopping Centre, Oxford |
Year(s) Of Engagement Activity | 2019 |