Statistical Methods for Improving Causal Analyses

Lead Research Organisation: University of Bristol
Department Name: UNLISTED

Abstract

We are trying to develop statistical methods to help medical researchers in their search for causes of disease. A lot of medical research involves gathering data from people and using statistical models to tell us which factors cause later health. For example, we might ask a group of people about their diet as children, as teenagers and as adults, and use this to try to tell us whether poor diet causes cancer in later life.
There are several problems with these studies that make it hard to draw conclusions. One is that people agreeing to be in a study are often different from people who don’t agree. Another is that people tend to drop out of a study over time – and again the people who drop out are often different from the people who stay. A third problem is that people change as they go through life – and we might want to know whether the cause of a disease happens at birth, or during childhood, or whether there are chances to prevent the disease even in adults.
Statistical models may not give the right answers if any of these problems occur – and this could mean that the wrong health advice is given, or the wrong treatments developed. We aim to develop methods that can overcome these real-life problems, and help medical researchers to be more confident in their conclusions about causes of disease.

Technical Summary

Aim: The aim of this programme is to develop methods for causal inference that are robust to missing data and can investigate change over time, in order to draw unbiased conclusions about realistic problems, using complex observational data.
Importance: Causal inference methods - in particular instrumental variable (IV) and Mendelian randomization (MR) methods - are now straightforward to implement, can be used with summary data, and are widely used by epidemiologists and medical researchers. However, the majority of real-world clinical research settings are more complex than the standard methods allow: data are missing; samples are selected; exposures and outcomes evolve jointly over time; and data from a wide variety of sources need to be integrated. Methods for causal inference, including IV, may be biased by missing data, including individuals missing due to sample selection. Standard IV methods are not able to address complex (and possibly time-varying) relationships between exposure, covariates and outcome. Multiple studies may provide information about the same causal effect, or about different paths in a network of causal effects, and we need to develop better methods to integrate evidence from different study types in order to draw causal inferences.
Objectives:
1. Develop methods to minimise bias due to missing data
2. Develop methods to model complex exposures and outcomes
3. Develop IV methods to examine causal influences of multiple exposures
4. Integrate evidence to improve causal models
Research plans: Part 1 of this programme will develop methods to use study information, and information external to the study, to infer the missing data structure, to inform all types of causal analyses. We will then focus on methods to maximise the robustness of IV methods to different types of missing data. We will pay particular attention to two cases: two-sample IV (using individual or summary data), and the investigation of disease prognosis. Part 2 will extend current methods for modelling trajectories and variability of exposures and outcomes. We will then focus on overcoming some of the current limitations of IV methods, by using structural equation modelling (SEM) and multivariable IV to examine impacts of time-varying exposures. Finally, we will maximise the use of all research data by extending methods to combine and use external information to inform causal models and sensitivity analyses.

People

ORCID iD

Publications

10 25 50
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Alcala K (2023) Kidney Function and Risk of Renal Cell Carcinoma in Cancer Epidemiology, Biomarkers & Prevention

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Arruda A (2023) Genetic underpinning of the comorbidity between type 2 diabetes and osteoarthritis in The American Journal of Human Genetics

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Barker R (2023) Associations of CTCF and FOXA1 with androgen and IGF pathways in men with localized prostate cancer. in Growth hormone & IGF research : official journal of the Growth Hormone Research Society and the International IGF Research Society

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Bartlett JW (2020) Bootstrap inference for multiple imputation under uncongeniality and misspecification. in Statistical methods in medical research

Related Projects

Project Reference Relationship Related To Start End Award Value
MC_UU_00011/1 01/04/2018 31/03/2023 £2,864,000
MC_UU_00011/2 Transfer MC_UU_00011/1 01/04/2018 31/03/2023 £965,000
MC_UU_00011/3 Transfer MC_UU_00011/2 01/04/2018 31/03/2023 £1,011,000
MC_UU_00011/4 Transfer MC_UU_00011/3 01/04/2018 31/03/2023 £1,329,000
MC_UU_00011/5 Transfer MC_UU_00011/4 01/04/2018 31/03/2023 £1,254,000
MC_UU_00011/6 Transfer MC_UU_00011/5 01/04/2018 31/03/2023 £1,640,000
MC_UU_00011/7 Transfer MC_UU_00011/6 01/04/2018 31/03/2023 £1,083,000
 
Description Enhanced Statistical Rigour in Health Data Research
Amount £925,204 (GBP)
Funding ID 215408 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2019 
End 09/2024
 
Description Investigating non-response among young people in Understanding Society
Amount £43,000 (GBP)
Organisation Understanding Society 
Sector Private
Country United Kingdom
Start 06/2023 
End 05/2024
 
Description MR/V020641/1 Development of miDOC: an expert system and methodology for multiple imputation
Amount £317,762 (GBP)
Funding ID MR/V020641/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 07/2021 
End 06/2023
 
Description Selection Bias and Mental Health: Towards an Integrated Understanding of Risk Factors for Suicide and Poor Self-rated Mental Health
Amount £183,553 (GBP)
Funding ID MQF22\22 
Organisation MQ Mental Health Research 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2023 
End 08/2026
 
Description Understanding social transitions in emerging adulthood and pathways to later health outcomes
Amount £300,000 (GBP)
Funding ID 224114/Z/21/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2022 
End 08/2026
 
Description Exeter selection bias 
Organisation University of Exeter
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration on work examining participation bias
Collaborator Contribution Collaboration on work examining participation bias
Impact Genetic predictors of participation in optional components of UK Biobank Jessica Tyrrell, Jie Zheng, Robin Beaumont, Kathryn Hinton, Tom G Richardson, Andrew R Wood, George Davey Smith, Timothy M Frayling, Kate Tilling bioRxiv 2020.02.10.941328; doi: https://doi.org/10.1101/2020.02.10.941328
Start Year 2018
 
Description Leicester IEB 
Organisation University of Leicester
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration on methods to overcome index event bias
Collaborator Contribution Collaboration on methods to overcome index event bias
Impact Slope-Hunter: A robust method for index-event bias correction in genome-wide association studies of subsequent traits Osama Mahmoud, Frank Dudbridge, George Davey Smith, Marcus Munafo, Kate Tilling bioRxiv 2020.01.31.928077; doi: https://doi.org/10.1101/2020.01.31.928077
Start Year 2019
 
Description Swiss MI 
Organisation ETH Zurich
Country Switzerland 
Sector Academic/University 
PI Contribution Collaborations on methods for missing data
Collaborator Contribution Collaborations on methods for missing data
Impact MSc thesis (submitted).
Start Year 2019
 
Description EUROCIM 2020 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact I co-organised the EUROCIM 2020 (European Causal Inference Meeting) , when the in-person event was cancelled at short notice due to COVID-19. We hosted a 2-day virtual conference from the MRC IEU, with a workshop and speakers. We had >200 attendees, and positive feedback afterwards.
Year(s) Of Engagement Activity 2020
 
Description JISCB2018 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Joint International Society for Clinical Biostatistics and Australian Statistical Conference (ISCB ASC), Melbourne, August 2018. Presenting "Selection bias in Instrumental Variable (IV) analyses" by Hughes RA, Davies NM, Davey Smith G, Tilling K.
Year(s) Of Engagement Activity 2018
 
Description Mendelian randomization for African scientists 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Six researchers from the MRC IEU organised a five-day course on Mendelian randomization to African researchers in Kilifi. The aim was to teach participants how to implement Mendelian randomization (MR) and how to use the IEU-developed and open-source MR-Base software platform. The UK researchers and the African scientists also spent time talking about their own research interests, stimulating potential future collaborations. Participant feedback was extremely positive with participants leaving with the skills and knowledge to apply MR in their own research. Some individuals are now planning research visits to the UK, with one having since secured a visiting fellowship and another has made a funding application.
Year(s) Of Engagement Activity 2022
URL https://ieureka.blogs.bristol.ac.uk/2023/01/27/genetic-epidemiology-african-scientists/
 
Description RSS2018 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Royal Statistical Society 2018 International Conference, Cardiff, September 2018. Presenting "Selection bias in Instrumental Variable (IV) analyses" by Hughes RA, Davies NM, Davey Smith G, Tilling K.
Year(s) Of Engagement Activity 2018
 
Description Variability Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact 25 academics attended a workshop on Outcome Variability at MRC IEU, Bristol, with presentations from local and national researchers, and discussion about ways to take this research area forward.
Year(s) Of Engagement Activity 2019