Actin cortex mechanics and the morphogensis of animal cells

Lead Research Organisation: University College London
Department Name: UNLISTED

Abstract

We investigate how animal cells control their shape. Many vital processes in our body rely on precise changes in cell shapes. For example, when a tissue is wounded, cells deform and migrate in order to close the wound. Another example is cell division, where the mother cell deforms and splits itself into two daughter cells. Cell division is central to embryonic development, where one initial cell multiplies and gives rise to an entire organism. Improper control of cell shape can lead to many diseases. A prominent example is cancer, where improper division lead to tumour formation and improper migration leads to metastasis. As for any other physical object, the shape of a cell is controlled by physics. The cell produces molecules, these molecules form larger structures, which determine the mechanical properties of a cell. It is these global mechanical properties that drive cell deformations. We combine biology and physics to understand how the cell controls its shape. We investigate the physical properties of cells, and relate them to the molecular processes that control them. This approach is powerful, because diseases, such as cancer, are caused by changes in the molecules but their effects, such as tumour formation, result from changes in global cell mechanics. It is thus essential to understand the physical control of processes like cell migration and division. Our long-term aim is to understand how a wrong control of cell physics leads to pathological conditions.

Technical Summary

The shape of animal cells is primarily determined by the cellular cortex, a cross-linked network of actin and myosin underlying the plasma membrane. The cortex enables the cell to resist and exert forces. As such, it plays a central role during events involving cell deformation, such as division and locomotion, and in the patho-physiology of diseases such as cancer, in which cortical mechanics are often misregulated. Despite its importance, very little is known about cortex composition, regulation, and mechanics. To address these questions, we combine cell and molecular biology experiments, quantitative imaging and theoretical modelling. This interdisciplinary approach allows us to investigate the basic mechanisms of morphogenesis across scales, from molecular players to emerging physical behaviours. The group follows three main research directions. We investigate cell shape control during cell division. Cell cleavage during cytokinesis relies on a controlled reorganisation of the cortex, which concentrates at the equator where it drives furrow ingression. We have recently shown that even though strong cortical forces are generated at the equator, the cortex remaining at the poles of the cell makes cytokinesis inherently unstable; an imbalance in cortex contractility between the two poles can compromise the accurate positioning of the constriction ring and result in contractile oscillations. A theoretical model based on a competition between cortex turnover and contraction dynamics accurately accounts for the oscillations. Taken together, our findings reveal an inherent instability in the shape of the dividing cell, indicating that polar cortex contractility must be tightly controlled during cytokinesis. When this control fails, the cortex displays oscillatory instabilities. We are now exploring how cell mechanics are regulated during cell division in order to ensure stable and symmetric cleavage. Furthermore, we started investigating whether contractile oscillations displayed by the apical cortex during epithelial tissue morphogenesis are driven by a similar mechanism. We also study cell shape mechanics during migration, with a particular focus on the formation and function of blebs, cellular protrusions driven by cortex contractions. Blebs are a common alternative to lamellipodia during migration in 3-dimensional environments. We are investigating the specific contributions of blebs and lamellipodia to cell motility in culture cells and in vivo, during zebrafish gastrulation. Furthermore, we are exploring the physical mechanisms of cell translocation during bleb-based migration, which seems to occur without specific adhesions to the substrate. To this aim, we use microfluidics channels, which present a well-defined geometry, allowing for quantitative measurements of cell shape and cortex dynamics during migration. Finally, we are investigating how cortical physical properties are controlled at the network level. As the cortex is less than 300 nm thick, close to the resolution limit of a standard optical microscope, the spatial organisation of cortical components has been elusive. We have developed methods to probe cortex organisation using sub-resolution image analysis. We are investigating the thickness of the cortex and the localisation of essential components, such as myosin motors. Our long-term aim is to understand how cortical contractility is controlled at the molecular level, in healthy and pathological conditions.

People

ORCID iD

Publications

10 25 50

Related Projects

Project Reference Relationship Related To Start End Award Value
MC_UU_12018/1 01/08/2013 31/03/2017 £1,079,000
MC_UU_12018/2 Transfer MC_UU_12018/1 01/08/2013 31/03/2017 £989,000
MC_UU_12018/3 Transfer MC_UU_12018/2 01/08/2013 31/03/2017 £925,000
MC_UU_12018/4 Transfer MC_UU_12018/3 01/08/2013 31/03/2017 £908,000
MC_UU_12018/5 Transfer MC_UU_12018/4 01/08/2013 31/03/2017 £1,560,000
MC_UU_12018/6 Transfer MC_UU_12018/5 01/08/2013 31/03/2017 £1,234,000
MC_UU_12018/7 Transfer MC_UU_12018/6 01/08/2013 31/03/2017 £1,070,000
 
Description EU Innovative Training Network
Amount £181,221 (GBP)
Funding ID 641639 ITN BIOPOL 
Organisation Marie Sklodowska-Curie Actions 
Sector Charity/Non Profit
Country Global
Start 01/2015 
End 12/2018
 
Description European Research Council starting grant
Amount € 1,500,000 (EUR)
Funding ID 311637 
Organisation European Research Council (ERC) 
Sector Public
Country Belgium
Start 03/2013 
End 02/2018
 
Description HFSP Young Investigator Grant
Amount $400,000 (USD)
Funding ID RGY0066/2013 
Organisation Human Frontier Science Program (HFSP) 
Sector Charity/Non Profit
Country France
Start 10/2013 
End 09/2016
 
Description Philip Leverhulme Prize in Biological Sciences
Amount £100,000 (GBP)
Organisation The Leverhulme Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 11/2015 
End 10/2019
 
Description Sir Henry Wellcome Postdoctoral Fellowship - Agathe Chaigne
Amount £250,000 (GBP)
Funding ID 201334/Z/16/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2016 
End 08/2020
 
Description Sir Henry Wellcome Postdoctoral Fellowship - Dani Bodor
Amount £250,000 (GBP)
Funding ID 204747/Z/16/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 02/2017 
End 01/2021
 
Title 3D cell segmentation software 
Description ImageJ plugin for the segmentation and morphometric analysis of cell shape and volume in 3 dimensions. 
Type Of Material Data analysis technique 
Year Produced 2017 
Provided To Others? Yes  
Impact The software is publicly available and is already used by other research groups. 
URL http://www.ucl.ac.uk/lmcb/meshplugin-0
 
Title Cortex dynamics simulation 
Description Agent based simulation for exploring the mechanisms of contractile tension generation in an actomyosin cortex. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? Yes  
Impact We used this simulation to explore the mechanisms underlying cortex tension generation in the following paper: Actin cortex architecture regulates cell surface tension. Chugh P, Clark AG, Smith MB, Cassani DAD, Dierkes K, Ragab A, Roux PP, Charras G, Salbreux G, Paluch EK. Nat Cell Biol. 2017. 
URL https://github.com/PaluchLabUCL/CortexDynamicsNCB
 
Title Cortex thickness analysis (dual colour confocal method) 
Description Software for cell segmentation and extraction of cortical linescans for the measurement of cortical thickness. 
Type Of Material Data analysis technique 
Year Produced 2017 
Provided To Others? Yes  
Impact The software its publicly available and has already been used by other groups. In our lab it has been used in two publications: Clark et al, Biophys J 2013 and Chugh et al, Nat Cell Biology 2017 
URL https://github.com/PaluchLabUCL/CortexThicknessAnalysis
 
Title Meshplugin 
Description ImageJ plugin to monitor daughter cell size in 3 dimensions during cytokinesis. 
Type Of Material Data analysis technique 
Year Produced 2016 
Provided To Others? Yes  
Impact The plugin was described in a methods paper: Smith MB, Chaigne A, Paluch EK. (2017) An active contour ImageJ plugin to monitor daughter cell size in 3D during cytokinesis. Methods Cell Biol, 137: 323-340 and is freely available online. It has now been used by several other groups in the UK and overseas. 
URL http://www.ucl.ac.uk/lmcb/meshplugin
 
Description ES cells 
Organisation University of Cambridge
Department Cambridge Stem Cell Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution We have started a collaboration with the groups of Dr Kevin Chalut and Dr Jenny Nichols to investigate the mechanics of the actin cortex in mouse embryonic stem cells. My lab provides their expertise in actin cortex mechanics and in cell migration.
Collaborator Contribution The group of Dr Chalut provides expertise in stem cell biology and biomechanics. The group of Dr. Nichols provides expertise in mouse embryology.
Impact four common projects are currently ongoing The collaboration is interdisciplinary, combining cell and developmental biology, embryology, and biophysics.
Start Year 2014
 
Description ES cells 
Organisation University of Cambridge
Department Department of Physiology, Development and Neuroscience
Country United Kingdom 
Sector Academic/University 
PI Contribution We have started a collaboration with the groups of Dr Kevin Chalut and Dr Jenny Nichols to investigate the mechanics of the actin cortex in mouse embryonic stem cells. My lab provides their expertise in actin cortex mechanics and in cell migration.
Collaborator Contribution The group of Dr Chalut provides expertise in stem cell biology and biomechanics. The group of Dr. Nichols provides expertise in mouse embryology.
Impact four common projects are currently ongoing The collaboration is interdisciplinary, combining cell and developmental biology, embryology, and biophysics.
Start Year 2014
 
Description Electron microscopy 
Organisation University College London
Department MRC Laboratory for Molecular Cell Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution We collaborate with the facility led by Jemima Burden to develop new transmission microscopy imaging techniques to observe the actin cortex. My group provides expertise in actin cell biology
Collaborator Contribution Jemima Burden provides expertise in electron microscopy
Impact several projects ongoing on imaging the actin cortex and the cortex interactions with intracellular components.
Start Year 2014
 
Description HFSP collaboration 
Organisation National Center for Scientific Research (Centre National de la Recherche Scientifique CNRS)
Department UPR 3082
Country France 
Sector Academic/University 
PI Contribution I have since 2008 a HFSP Young Investigator grant with groups in these three organisations. The grant has recently been renewed for another 4 year period. My laboratory contributes expertise in cellular mechanics, quantitative imaging and modelling.
Collaborator Contribution The group of G Charras contributes expertise on the cell cortex and its regulation, the group of P Roux expertise on mass spectrometry and the group of G Romet-Lemonne, expertise in in vitro studies of actin.
Impact Common publications resulting from the collaboration since 2013 (PMIDs): 24136886; 25017211; 25774834 Other related publications from individual groups: 21630140; 22786929; 22923438; 21980262; 23790388; 23345594; 24845681
Start Year 2008
 
Description HFSP collaboration 
Organisation University College London
Department London Centre for Nanotechnology
Country United Kingdom 
Sector Academic/University 
PI Contribution I have since 2008 a HFSP Young Investigator grant with groups in these three organisations. The grant has recently been renewed for another 4 year period. My laboratory contributes expertise in cellular mechanics, quantitative imaging and modelling.
Collaborator Contribution The group of G Charras contributes expertise on the cell cortex and its regulation, the group of P Roux expertise on mass spectrometry and the group of G Romet-Lemonne, expertise in in vitro studies of actin.
Impact Common publications resulting from the collaboration since 2013 (PMIDs): 24136886; 25017211; 25774834 Other related publications from individual groups: 21630140; 22786929; 22923438; 21980262; 23790388; 23345594; 24845681
Start Year 2008
 
Description HFSP collaboration 
Organisation University of Montreal
Department Institute of Research in Immunology and Cancer (IRIC)
Country Canada 
Sector Academic/University 
PI Contribution I have since 2008 a HFSP Young Investigator grant with groups in these three organisations. The grant has recently been renewed for another 4 year period. My laboratory contributes expertise in cellular mechanics, quantitative imaging and modelling.
Collaborator Contribution The group of G Charras contributes expertise on the cell cortex and its regulation, the group of P Roux expertise on mass spectrometry and the group of G Romet-Lemonne, expertise in in vitro studies of actin.
Impact Common publications resulting from the collaboration since 2013 (PMIDs): 24136886; 25017211; 25774834 Other related publications from individual groups: 21630140; 22786929; 22923438; 21980262; 23790388; 23345594; 24845681
Start Year 2008
 
Description Mao group 
Organisation University College London
Department MRC Laboratory for Molecular Cell Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution I co-supervise two PhD students with Dr. Yanlan Mao. I provide expertise in biophysics and the cell biology of the actin cytoskeleton.
Collaborator Contribution Dr. Mao and her team provide expertise in Drosophila morphogenesis.
Impact Two PhD projects are currently ongoing. A joint paper is about to be submitted for publication.
Start Year 2015
 
Description Primordial germ cell migration 
Organisation Imperial College London
Department MRC London Institute of Medical Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution We have started a collaboration with Dr. Harry Leitch at the MRC LMS to investigate the mechanisms underlying migration of mouse primordial germ cells. Dr. Irene Aspalter, an MRC-funded postdoc in my group, has generated preliminary data demonstrating that the migration of mammalian PGCs and PGC-like cells derived from stem cells, can be investigated in vitro using micro fabricated devices mimicking in vivo confinement. Based on these data, we have written a grant proposal to extensively investigate PGC migration in vivo and in vitro.
Collaborator Contribution Dr Leitch's group works on mouse and human primordial germ cells and the in vivo aspects of the project are investigated in his group. His group also provides cells and expertise for the in vitro investigations.
Impact the collaboration is highly multidisciplinary at the interface of cell and developmental biology, biophysics and micro fabrication engineering. Output: joint grant application
Start Year 2018
 
Description Salbreux group 
Organisation Francis Crick Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution Dr Salbreux is a theoretical physicist working in the field of biological physics. We have several ongoing projects combining experiments, quantitative imaging and modelling. The experimental side is provided by my research group.
Collaborator Contribution The group of Dr Salbreux provides their expertise in theoretical physics and modelling of biological systems.
Impact Common articles since 2013: PMIDS: 23452600; 24845681; 25774834; 27589901 Several articles are currently submitted / being prepared.
Start Year 2006
 
Description Super-resolution 
Organisation University College London
Department MRC Laboratory for Molecular Cell Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution I co-supervise a student with Dr. Ricardo Henriques to investigate the nanoscale organisation of the cellular actin cortex. My lab provides the biological question and expertise in cell morphogenesis and the function of the actin cortex.
Collaborator Contribution Dr. Henriques provides expertise in state-of-the-art super resolution microscopy.
Impact Multi-disciplinary collaboration combining biology, physics and advanced imaging and image analysis.
Start Year 2017
 
Description cryo electron miscroscopy 
Organisation University of Zurich
Country Switzerland 
Sector Academic/University 
PI Contribution We collaborate with the group of Prof. Medalia to investigate actin cortex organisation using cryo-electron microscopy. We provide expertise in actin cell biology and a PhD student in my group is lead on this project.
Collaborator Contribution The group of Prof. Medalia provides expertise in cryo electron microscopy.
Impact The PhD student working on the project successfully defended his PhD in 2018. A joint paper is about to be submitted for publication.
Start Year 2016
 
Title Cortex thickness analysis (dual colour confocal method) 
Description Software for cell segmentation and extraction of cortical linescans for the measurement of cortical thickness. 
Type Of Technology Software 
Year Produced 2013 
Impact The software its publicly available and has already been used by other groups. In our lab it has been used in two publications: Clark et al, Biophys J 2013 and Chugh et al, Nat Cell Biology 2017 
 
Title Meshplugin 
Description ImageJ plugin to monitor daughter cell size in 3 dimensions during cytokinesis. 
Type Of Technology Software 
Year Produced 2016 
Open Source License? Yes  
Impact The plugin was described in a methods paper: Smith MB, Chaigne A, Paluch EK. (2017) An active contour ImageJ plugin to monitor daughter cell size in 3D during cytokinesis. Methods Cell Biol, 137: 323-340 and is freely available online. It has now been used by several other groups in the UK and overseas. 
URL http://www.ucl.ac.uk/lmcb/meshplugin
 
Description MRC Centenary Open Day at UCL 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact activities aiming at explaining cell mechanics to a broader audience. Activities with soap bubbles to mimic cell tension and play-doh model of the cell for children.

enthusiastic feedback from the public on the open day
Year(s) Of Engagement Activity 2013
 
Description Nature interview about Physics in Biomedical Research 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Interview conducted by a journalist from Nature about physical approaches in biomedical research, particularly in the context of interdisciplinary approaches at the Francis Crick Institute.
Year(s) Of Engagement Activity 2014
URL http://www.nature.com/news/biomedical-institute-opens-its-doors-to-physicists-1.15299
 
Description Times Higher Education interview about the Crick Institute and Biological Physics 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Interview conducted by a journalist from Times Higher Education for an article on the Francis Crick Institute, focusing particularly on interdisciplinary approaches to biomedical research.
Year(s) Of Engagement Activity 2015
URL https://www.timeshighereducation.com/features/the-francis-crick-institute-science-and-serendipity
 
Description Women in STEM school event 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact 270 pupils aged 14 to 18 attended the Women in STEM event organised by the Camden Council and the Francis Crick Institute. The event consisted of a one hour panel discussion where I was one of the 4 panel members, followed by an open discussion / career fair where a number of students came up to ask further questions to the panelists.
Year(s) Of Engagement Activity 2016