Translational Termination and its Regulation by Hydroxylation
Lead Research Organisation:
University of Birmingham
Department Name: Cancer Sciences
Abstract
Synthesis of proteins is essential in order for cells to grow and divide. Since cancer cells generally grow faster than normal cells they need more protein synthesis. Therefore, protein synthesis could be blocked with drugs in tumour cells as a way of treating cancer.
Our research focuses on an enzyme known as JMJD4. Although this enzyme has links to cancer no one knows if, or how, it might contribute to tumour growth. We have recently discovered that JMJD4 regulates a cellular pathway involved in protein synthesis, and that inhibiting JMJD4 stops the growth of tumour cells in the laboratory.
The research in this proposal aims to understand more about JMJD4 and its role in protein synthesis and cancer. Specifically, we wish to study whether JMJD4, and the pathways it regulates in protein synthesis, are required for tumour growth. We will do this using a mouse cancer model (this will extend our previous experiments using the more artificial laboratory-based approach).
The experiments in this proposal also aim to understand exactly how inhibiting the JMJD4 enzyme affects protein synthesis: We will use an exciting and powerful new technique to accurately pinpoint the position of the protein synthesis machinery on the 'genetic code'. The information from this experiment will help us understand how inhibiting JMJD4 stops the growth of tumour cells. Such information could be used to improve the way in which we target drugs against JMJD4 and protein synthesis in the future.
Finally, our work has identified JMJD4 as a novel enzyme that regulates aspects of protein synthesis and tumour cell growth. It would be very useful to identify other enzymes that regulate protein synthesis in cancer cells to develop new ways of combating cancer. Therefore, the proposal also aims to use a genetic 'screen' to ask which of the all the genes in the human genome control similar aspects of protein synthesis to that regulated by JMJD4.
Our research focuses on an enzyme known as JMJD4. Although this enzyme has links to cancer no one knows if, or how, it might contribute to tumour growth. We have recently discovered that JMJD4 regulates a cellular pathway involved in protein synthesis, and that inhibiting JMJD4 stops the growth of tumour cells in the laboratory.
The research in this proposal aims to understand more about JMJD4 and its role in protein synthesis and cancer. Specifically, we wish to study whether JMJD4, and the pathways it regulates in protein synthesis, are required for tumour growth. We will do this using a mouse cancer model (this will extend our previous experiments using the more artificial laboratory-based approach).
The experiments in this proposal also aim to understand exactly how inhibiting the JMJD4 enzyme affects protein synthesis: We will use an exciting and powerful new technique to accurately pinpoint the position of the protein synthesis machinery on the 'genetic code'. The information from this experiment will help us understand how inhibiting JMJD4 stops the growth of tumour cells. Such information could be used to improve the way in which we target drugs against JMJD4 and protein synthesis in the future.
Finally, our work has identified JMJD4 as a novel enzyme that regulates aspects of protein synthesis and tumour cell growth. It would be very useful to identify other enzymes that regulate protein synthesis in cancer cells to develop new ways of combating cancer. Therefore, the proposal also aims to use a genetic 'screen' to ask which of the all the genes in the human genome control similar aspects of protein synthesis to that regulated by JMJD4.
Technical Summary
Deregulated protein synthesis and translational control are crucial aspects of cancer initiation and progression. As such protein translation is attracting increasing interest as a source of novel cancer targets. I have recently discovered that the molecular machinery controlling termination of protein synthesis is targeted by JMJD4, a completely uncharacterised 2-oxoglutarate-dependent oxygenase related to the HIF hydroxylases and JmjC-histone demethylases. I have shown that JMJD4 is overexpressed in tumours and required for the viability of cancer cells. JMJD4 hydroxylates K63 of the translational termination factor eRF1 within a highly conserved functional motif involved in stop-codon recognition: JMJD4 inhibition causes ribosomal readthrough of stop codons. I hypothesise that inhibition of eRF1 hydroxylation causes aberrant protein synthesis, re-expression of nonsense mutated tumour suppressor genes and reduced tumuourigenesis. This proposal aims to test these hypotheses using a multidisciplinary approach with the ultimate aim of validating JMJD4 and the translational termination pathway as a novel and druggable anti-cancer target.
Planned Impact
This proposal describes research into the role of JMJD4 and translational termination in cancer, with the aim of validating this understudied biological pathway for further medical research and ultimately clinical translation. Therefore, the ultimate potential beneficiaries of the work are cancer patients because the work could give rise to novel therapeutic strategies for combating their disease. As discussed in the proposal, there is also the possibility that the work could benefit other disease patients, namely those suffering diseases caused by nonsense mutations, such as cystic fibrosis and muscular dystrophy.
Since the proposed research aims to explore a novel fundamental aspect of cell biology, and would therefore be classed as 'basic research', the timescale of potential benefit to patients is several years.
Since the proposed research aims to explore a novel fundamental aspect of cell biology, and would therefore be classed as 'basic research', the timescale of potential benefit to patients is several years.
People |
ORCID iD |
Mathew Coleman (Principal Investigator) |
Publications
Feng T
(2014)
Optimal translational termination requires C4 lysyl hydroxylation of eRF1.
in Molecular cell
Ploumakis A
(2015)
OH, the Places You'll Go! Hydroxylation, Gene Expression, and Cancer.
in Molecular cell
Singleton RS
(2014)
OGFOD1 catalyzes prolyl hydroxylation of RPS23 and is involved in translation control and stress granule formation.
in Proceedings of the National Academy of Sciences of the United States of America
Zhuang Q
(2015)
Modifying the maker: Oxygenases target ribosome biology.
in Translation (Austin, Tex.)
Description | Biochemical characterisation of protein hydroxylation |
Organisation | University of Oxford |
Department | Department of Chemistry |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Our team collaborates closely with that of Professor Christopher Schofield to characterise the biochemistry and structural biology of protein hydroxylases. We provide information regarding the biology and substrates of these enzymes which they then study to provide further mechanistic insight. |
Collaborator Contribution | This collaborator contributes expert knowledge and skills for studying protein hydroxylation, crystallography, NMR and small molecule inhibition. |
Impact | This collaboration has resulted in an article published in Molecular Cell. The collaboration has resulted in multiple other research articles and reviews since 2004.The collaboration is multi-disciplinary and includes biochemistry, chemistry, structural biology and biophysical analyses. |
Description | Bioinformatic analyses of oxygenase mutation in cancer |
Organisation | University of Birmingham |
Department | Centre for Computational Biology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We have provided candidate oxygenases for assessment of mutation status in cancer NGS studies |
Collaborator Contribution | Our collaborator, Dr Andrew Beggs, has provided detailed information regarding the mutation status of several oxygenases across cancer. |
Impact | In progress. |
Start Year | 2014 |
Description | In vitro Termination Assays |
Organisation | Russian Academy of Sciences |
Department | Engelhardt Institute of Molecular Biology (EIMB) |
Country | Russian Federation |
Sector | Academic/University |
PI Contribution | Our research team has sent recombinant protein to this collaborator to study using their in vitro system. |
Collaborator Contribution | This collaborator is an expert in translational termination and has developed a fully reconstituted in vitro translation. They are applying this system to measure the effect of eRF1 hydroxylation, as proposed in award MR/K010816/1 and submitted to Molecular Cell. |
Impact | See publication submitted and under review at Molecular Cell. |
Start Year | 2015 |
Description | Mass spectrometry analyses of hydroxylase targets |
Organisation | University of Oxford |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Provision of protein samples for MS analyses. |
Collaborator Contribution | MS expertise |
Impact | In progress. |
Description | Oxygen sensing |
Organisation | University of Oxford |
Department | Oxford Genomics Centre |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Our team collaborates closely with that of Professor Sir Peter Ratcliffe to characterise potential oxygen sensing roles of protein hydroxylases. We identify novel oxygen-dependent protein hydroxylases for their characterisation in hypoxia. |
Collaborator Contribution | This collaborator contributes expert knowledge and skills for studying oxygen sensing and hypoxia in vitro and in vivo. |
Impact | This collaboration has resulted in an article that was published in Molecular Cell. The collaboration has resulted in multiple other research articles and reviews since 2004. |
Title | ASSAY |
Description | The present invention provides a way to treat cancer by modulating JMJD4 activity. The invention also relates to assays for monitoring activity of JMJD4 activities, in particular, to assays for identifying modulators of JMJD4 activities. The invention further relates to assays to monitor the lysyl hydroxylase activity of JMJD4 on its substrate, the translation termination protein eRFl. The invention also enables the introduction of hydroxylysyl residues into peptides and proteins. The invention further provides a way to modulate translation termination and hence to stimulate readthrough of nonsense mutations associated with disease. |
IP Reference | WO2014016605 |
Protection | Patent granted |
Year Protection Granted | 2014 |
Licensed | No |
Impact | NA |
Description | Open day for CRUK fundraisers |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Supporters |
Results and Impact | Presented sessions in the laboratories on tumour cell culture and microscopy to three groups of CRUK fundraisers |
Year(s) Of Engagement Activity | 2015 |
Description | Presentation at Solihull Cancer Support Group |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Patients, carers and/or patient groups |
Results and Impact | I presented a lecture to a group of ~50 cancer patients and their families, in which I described the 'hallmarks' of cancer cells. I received very positive feedback and was told it was very informative and helped improve the audiences understanding of the biology behind their disease. |
Year(s) Of Engagement Activity | 2015 |
Description | Support staff at Birmingham Cancer Showcase |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Meet and greet with visitors to the Birmingham Cancer Showcase day, where I described my research and answered questions on cancer biology. |
Year(s) Of Engagement Activity | 2015 |
Description | Supporting CRUK Fun Run |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | Yes |
Geographic Reach | Local |
Primary Audience | Supporters |
Results and Impact | I was interviewed by local radio at the event, described our cancer research and how incredibly important public support and fund raising was. Hopefully this engagement enthused members of the public to continue fundraising, with a greater awareness of what researchers are doing and how costly the work is, and our appreciation for their support. |
Year(s) Of Engagement Activity | 2013 |