The role of miR-132 in the immune response to pathogens

Lead Research Organisation: University of York
Department Name: Biology

Abstract

Infectious diseases are the second most common cause of death worldwide. Infections are particularly dangerous for people with weak immune systems, such as children, malnourished individuals, or individuals suffering from AIDS. Discovering the ways through which our body normally fights an infection and boosting these mechanisms in high-risk individuals is a valuable approach to treating, curing, or preventing diseases caused by infection. This is the main focus of our research plan. We are particularly interested in a class of genes that was recently discovered. These genes are called 'microRNAs' and unlike normal genes, do not generate proteins. Until ten years ago these parts of our genome were considered to be junk DNA, but we now know that they are as important as normal 'protein-coding' genes. In particular, we have discovered that miR-132 is a microRNA that normally prevents an exaggerated response to infection (an unnecessarily strong immune response would also lead to serious illness). We found that pathogens exploit this genetic Achilles' heel to escape from the immune system. These pathogens include viruses and parasites that significantly contribute to the global disease burden, especially in developing countries and among HIV-infected individuals. In particular, our studies suggest that miR-132 controls multiple arms of the immune response to the causative infectious agents of diseases such as Leishmaniasis. In addition, our studies indicate that inhibiting the activity of miR-132 boosts the anti-pathogen immune response. Therefore, we propose that blocking the action of miR-132 could limit infection with a broad range of pathogens and delay or prevent disease. To test this, we will investigate in detail how miR-132 works during infection and test the potential of anti-miR-132 drugs in experimental models of infection. In the proposed research programme, we aim to uncover crucial secrets of how our body fights infection and set the basis for the clinical use of agents that antagonize miR-132 for the treatment of infectious diseases.

Technical Summary

An appropriate immune response requires coordination of a multitude of initiating, amplifying and resolving signals and processes. Understanding the mechanisms that ensure an optimal equilibrium between activating and regulatory immune processes is of utmost importance for the treatment of infectious diseases. In this project, we propose that microRNAs act as molecular integrators of the immune response through their ability to concurrently regulate expression of several genes in a tissue- and cellular state-specific manner. In particular, we will investigate the function of miR-132, a critical component of the regulatory arm of the innate immune response. We have recently found that genetic deletion of miR-132 provides protection against infection and infection-associated tissue remodeling. Our studies suggest that miR-132 negatively regulates inflammation by simultaneously limiting the interferon response and promoting angiogenesis. These findings will be used as a solid platform in the proposed project, which will investigate in-depth the effects of miR-132 on the inflammatory response to infection. Using unique gene knockout models and a tractable in vivo infection model, we will dissect the mechanisms employed by miR-132 at the cellular and molecular level, focusing on the role of miR-132 in macrophages and endothelial cells and its interactions with p300, a master transcriptional co-activator, and Rasa1, a fundamental signaling effector. In addition to gaining crucial insight into immunological mechanisms, the proposed studies will reveal how miR-132 interacts with its targets in a context-dependent manner to perform its function in different cell types. Therefore this project will result in significant conceptual advancements in the fields of immunology and microRNA biology, and also set the foundation towards the development of novel therapeutic approaches in infectious diseases.

Planned Impact

A better understanding of the mechanisms underlying immunity can lead to improved treatment of infectious and autoimmune diseases. In this respect our proposal will provide significant clues regarding the role of microRNAs, and in particular miR-132, in inflammation. Our work will reveal microRNA-mediated mechanisms linking the vascular and inflammatory responses to infection. This will open up new routes for combinatorial therapies in infectious diseases, and identify therapeutic targets (such as miR-132) that act as hubs of multiple dysregulated, disease-associated processes during disease development. This is of notable value as miR-132 is a clinically targetable molecule. Basal expression of miR-132 outside the brain is low, but inducible upon pathological stress such as infection, autoimmune disease, and cancer. Our studies will focus on experimental models investigating the potential protective role of miR-132 inhibition against infection. Positive results in these models would have strong translational potential as the Locked Nucleic Acid (LNA) microRNA inhibitors used in our studies are clinically relevant (LNA inhibitors are currently used in the clinic as the first microRNA therapeutics) and do not cross the blood-brain barrier, which will prevent undesired effects in the brain where miR-132 basal expression is significant and functionally essential. During this project, we will study the function of miR-132 in an experimental model of infection. Therefore the primary future beneficiaries of our research could be individuals affected by complex infectious diseases, for which treatments are currently limited, such as Leishmaniasis. These conditions contribute significantly to the global disease burden. For example visceral Leishmaniasis is a major health problem in India and parts of South America (where leishmania infection is endemic), and a major cause of mortality and morbidity among immunosuppressed individuals, such as people infected with HIV, worldwide (including Europe and the UK). We expect that the proposed studies will be a major step towards the future use of anti-miR-132 agents for the treatment of these infectious diseases. Furthermore, our mechanistic findings will enhance our understanding of other conditions characterized by miR-132 induction such as chronic inflammatory conditions and cancer, which in the longer term could benefit individuals suffering with these diseases.

Publications

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Bridgewood C (2017) IL-36? has proinflammatory effects on human endothelial cells. in Experimental dermatology

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Hewitson JP (2020) Malat1 Suppresses Immunity to Infection through Promoting Expression of Maf and IL-10 in Th Cells. in Journal of immunology (Baltimore, Md. : 1950)

 
Title Messenger by Christy Ducker. Smith/Doorstop Books (10 Mar. 2017) ISBN-10: 1910367966 ISBN-13: 978-1910367964 
Description Dimitris Lagos wrote the preface in a published collection of poems by award-winning poet Christy Ducker and two film poems by Kate Sweeny who have won awards in international competitions (Festival Silencio in Lisbon; Rabbit Heart Film Festival). The works were based on work on RNA (A Scientist's Advice on Healing: https://vimeo.com/163933380) and infectious diseases such as leishmaniasis (Vaccine: https://vimeo.com/193369489). Christy and Kate were hosted by Dimitris Lagos for a year through a Wellcome Trust-funded residency. 
Type Of Art Creative Writing 
Year Produced 2017 
Impact A series of public engagement events (Festival of Ideas, Pint of Science). Awards for the artists involved (see above). 
URL http://www.poetrybusiness.co.uk/shop/939/messenger
 
Description A UK underpinning platform to study immunology and immunopathology of COVID-19:The UK Coronavirus Immunology Consortium
Amount £6,552,119 (GBP)
Funding ID MR/V028448/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 08/2020 
End 08/2021
 
Description A multiscale model to minimise animal usage in leishmaniasis drug development
Amount £996,464 (GBP)
Funding ID NC/C013205/1 
Organisation National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) 
Sector Public
Country United Kingdom
Start 10/2014 
End 09/2017
 
Description MRC Global Challenges Research Fund Foundation Award
Amount £600,000 (GBP)
Funding ID MR/P024661/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 03/2017 
End 02/2019
 
Description Proof of principle study for Illumina small RNA sequencing in York
Amount £5,232 (GBP)
Organisation University of York 
Sector Academic/University
Country United Kingdom
Start 01/2015 
End 01/2016
 
Description Travel support to present at the EMBL "Non-coding Genome" symposium
Amount £1,215 (GBP)
Organisation Hull York Medical School 
Sector Academic/University
Country United Kingdom
Start 10/2015 
End 11/2015
 
Description UK:Brazil Joint Centre Partnership in leishmaniasis
Amount £1,168,009 (GBP)
Funding ID MR/S019472/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 03/2019 
End 03/2022
 
Description CRACK-IT Phase 2: A multiscale model to minimise animal usage in Leishmaniasis drug development 
Organisation London School of Hygiene and Tropical Medicine (LSHTM)
Country United Kingdom 
Sector Academic/University 
PI Contribution Co-I in a NC3Rs-funded consortium developing in silico simulations of visceral leishmaniasis. Involved in host transcriptomics interpretation. Contributing towards integration of transcriptomics into computational models of disease development.
Collaborator Contribution Paul Kaye leads the consortium. Simon Croft (LSHTM) and Jeremy Motram (University of York) provide expertise in leishmania pharmacology and pathogen genomics, respectively. Jon Timmis and Mark Coles (SimOmics) and Jim Austin (Sibulla) develop software and cloud infrastructure.
Impact No outputs yet. Multidisciplinary team including immunologists, pathogen biologists, pharmacologists, computer software developers, computer modelers.
Start Year 2015
 
Description Hosted Wellcome Trust-funded Artist in Residence for 1 year 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Hosted a poet for one year who produced a pamplet on the theme of immunity, wounds and healing, and two film-poems by fellow-collaborator, Kate Sweeney. The pamplet, titled Messenger will be published i March 2017 by Smith & Doorstop. During the year, I have participated in events associated with this collaboration including talks in the Festival of Ideas and Events in York Art Gallery. This collaboration between Medical Sciences and Art has had a notable impact on lay audiences ("I never thought that poetry and science can work together") and provided new communication routes of my research on infectious diseases and non-coding RNAs to broader audiences.
Year(s) Of Engagement Activity 2016,2017
URL https://www.york.ac.uk/c2d2/projects/artist/#tab-2
 
Description Press release for discovery on how microRNAs affect immunity to infection 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact A press release from the University of York in relation to this manuscript:
Hewitson JP, Shah KM, Brown N, Grevitt P, Hain S, Newling K, Sharp TV, Kaye PM, Lagos D. miR-132 suppresses transcription of ribosomal proteins to promote protective Th1 immunity. EMBO Rep. 2019
Year(s) Of Engagement Activity 2019
URL https://www.york.ac.uk/news-and-events/news/2019/research/putting-the-brake-on-our-immune-systems-re...
 
Description Radio interview in BBC Radio York 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Radio interview in BBC Radio York as a result of the press release associated with this paper:
Hewitson JP, Shah KM, Brown N, Grevitt P, Hain S, Newling K, Sharp TV, Kaye PM, Lagos D. miR-132 suppresses transcription of ribosomal proteins to promote protective Th1 immunity. EMBO Rep. 2019
Year(s) Of Engagement Activity 2019