Molecular mechanisms of TDP-43 mediated neurodegeneration

Lead Research Organisation: King's College London
Department Name: Neuroscience

Abstract

Tar DNA binding protein of 43 kDa (TDP-43) has been identified as the major disease protein in cellular aggregates found in Amyotrophic Lateral Sclerosis (ALS) and Frontotemporal Lobar Degeneration (FTLD). TDP-43 positive aggregates are also found in other neurodegenerative disorders including Alzheimer's, Parkinson's and Huntington's disease, thereby defining a novel proteinopathy. Mutations in the encoding TARDBP gene characterise heritable and sporadic cases of ALS and FTLD and recent studies in flies, fish and mice reveal that too much or not enough available TDP-43 protein can both contribute to disease onset and progression. TDP-43 proteinopathy is associated with faulty communication between nerve cells, which precede behavioural defects and progressive age-related degeneration of these nerve cells. However, the molecular mechanisms underlying neurodegeneration remain elusive. Our hypothesis is, and our preliminary data suggest, that TDP-43 regulates dSarm/Sarm1 and Hiw/mycBP2, as target proteins that have been shown to mediate an active autodestruction program. Our hypothesis predicts that TDP-43 mediated deregulation of these proteins causes degeneration of nerve cells starting with destruction of their contact points and axonal extensions and proceeding to the cell body itself, thereby causing "dying back-like" neurodegeneration. Here we propose to use animal and cell culture models to test this hypothesis and to dissect the molecular mechanisms by which TDP-43 regulates dSarm/Sarm1 and Hiw/mycBP2. We also aim to identify ways to rescue disease formation in a fly model of TDP-43 related neurodegeneration, and to translate these findings into the human disease condition by detecting changes in RNA and protein expression levels of human dSarm/Sarm1 and Hiw/mycBP2 homologues. Given that TDP-43 proteinopathy characterises several neurodegenerative disorders, including dementia, the expected findings will be of general relevance and application as they likely identify novel biomarkers and therapeutic targets for TDP-43 related neurodegeneration.

Technical Summary

Tar DNA binding protein of 43 kDa (TDP-43) has been identified as the major disease protein present in cytoplasmic inclusions in Amyotrophic Lateral Sclerosis (ALS) and Frontotemporal Lobar Degeneration (FTLD), as well as in other neurodegenerative disorders including Alzheimer's, Parkinson's and Huntington's disease, thereby defining a novel proteinopathy. Dominant missense mutations in the encoding TARDBP gene characterise both familial and sporadic cases of ALS and FTLD, and recent studies in Drosophila, zebrafish and mice reveal that both loss and toxic gain of TDP-43 function contribute to disease onset and progression. TDP-43 proteinopathy is associated with synaptic defects which precede behavioural abnormalities and progressive age-related neurodegeneration. However, the molecular mechanisms underlying neurodegeneration remain elusive. Our hypothesis is, and our preliminary data suggest, that TDP-43 regulates dSarm/Sarm1 and Hiw/mycBP2 that mediate an active autodestruction program causing dying back-like neurodegeneration. Here we propose to use animal and cell culture models to test this hypothesis and to dissect the molecular mechanisms by which TDP-43 regulate dSarm/Sarm1 and Hiw/mycBP2. We also aim to identify ways to rescue disease formation in a Drosophila model of TDP-43 related neurodegeneration, and to translate these findings into the human disease condition by detecting RNA/protein changes for human homologues of the autodestruction pathway. Given that TDP-43 proteinopathy characterises several neurodegenerative disorders, including dementia, the expected findings will be of general relevance and application as they likely identify novel biomarkers and therapeutic targets for TDP-43 related neurodegeneration.

Planned Impact

In a society with a growing population of elderly people, neurodegenerative disorders are becoming more and more abundant. Our research into the causes of neurodegeneration will significantly contribute to our understanding of these devastating diseases. The research proposed here will identify genes, and functional pathways, that are critically important in mediating neurodegeneration. The new information gained from the research of this proposal will make a significant contribution to a novel approach for the identification of biomarkers and therapeutic targets for neurodegenerative diseases. In addition, our insights gained into the causes and mechanisms underlying age-related neurodegeneration will inform strategies for improving healthy ageing and hence enhancing quality of life, while minimising the need for health and social care during ageing. The beneficiaries, listed below, will be both international and UK based.

Medical profession, charities and pharmaceutical industry
TDP-43 aggregates define a novel proteinopathy and have been found in several neurodegenerative diseases, including dementia. Thus, definition of the molecular and cellular mechanisms underlying TDP-43 related neurodegeneration, will identify genes, and functional pathways, that are critically important in pathogenesis. This in turn will lead to the identification of biomarkers and therapeutic targets for the early diagnosis and targeted treatment of TDP-43 related neurodegeneration. Thus, results from our research will inform the medical profession for clinical research, as well as charities for future strategies. It will also guide the pharmaceutical profession and on a longer shot pharmaceutical industry, to identify or generate drugs and compounds that can be used for the targeted treatment of TDP-43 related neurodegeneration but likely also other degenerative disorders.

Government and general public
Novel information concerning fundamental processes by which aberrant function of TDP-43 causes progressive neurodegeneration can ultimately lead to strategies for the early diagnosis and targeted treatment of TDP-43 related neurodegeneration. Hence it has the potential to enhance quality of life, while minimising the need for health and social care during ageing. Thus, the ability to identify biomarkers and therapeutic targets for the early diagnosis and targeted treatment of TDP-43 related neurodegeneration will affect government policies such as the UK government's dementia strategy and to support an ageing UK population. Important measures of the new strategy include providing support to people to plan earlier for their longer lives and making sure that services are suitable when the time comes to use them. The provision of new and novel information that will contribute to an understanding of the molecular and cellular pathways involved in TDP-43 related neurodegeneration, and therefore potential therapeutic targets, will help to refine and target these strategies to an ageing UK population and for the human population as a whole.

Publications

10 25 50
 
Description ARUK Network Grant
Amount £100,000 (GBP)
Organisation Alzheimer's Research UK 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2014 
End 08/2016
 
Description BBSRC project grant
Amount £400,000 (GBP)
Funding ID BB/N001230/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 02/2016 
End 01/2019
 
Description Brazilian Government
Amount £100,000 (GBP)
Funding ID Jessika Bridi 
Organisation Government of Brazil 
Department Coordination of Higher Education Personnel Training (CAPES)
Sector Public
Country Brazil
Start 10/2014 
End 09/2017
 
Description MNDA PhD Studentship
Amount £94,375 (GBP)
Funding ID Hirth 890-792 
Organisation Motor Neurone Disease Association (MND) 
Sector Charity/Non Profit
Country United Kingdom
Start 06/2017 
End 05/2020
 
Description MNDA PhD studentship
Amount £95,000 (GBP)
Organisation Motor Neurone Disease Association (MND) 
Sector Charity/Non Profit
Country United Kingdom
Start 06/2017 
End 05/2020
 
Description MNDA Short Grant
Amount £10,000 (GBP)
Funding ID Hirth/Nov15/914-793 
Organisation Motor Neurone Disease Association (MND) 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2016 
End 03/2016
 
Description Project Grant
Amount £60,000 (GBP)
Organisation The Dunhill Medical Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2017 
End 09/2018
 
Title DART 
Description We developed a software and behavioural paradigm using video assisted motion tracking to deconstruct and analyse motor behaviour, including parameters such as action initition and maintenance that are relevant for a large number of movement and motivation disorders 
Type Of Material Technology assay or reagent 
Provided To Others? No  
Impact We have currently 2 manuscripts under review at high impact journals. We plan to publish the method in another two manuscripts in preparation. 
 
Title Drosophila model of G4C2 repeat expansion 
Description We developed transgenic flies to express G4C2 hexanucleotide repeat expansions related to ALS and FTD. Our model also produces Dipeptide Repeat Proteins (DPRs) found in patients. 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2015 
Provided To Others? Yes  
Impact Our constructs allowed us and our collaborators to investigate pathogenic mechanisms underlying C9ALS/FTD. 
 
Title poly-GP MAB 
Description We generated a monoclonal antibody to detect poly-GP, a polypeptide derived from G4C2 hexanucleotide repeats that are RAN translated into toxic species found in ALS and FTD. 
Type Of Material Antibody 
Provided To Others? No  
Impact We are currently asking for further funding to test this antibody as a diagnostic marker for the clinic 
 
Description Janelia Farm Collaboration 
Organisation Howard Hughes Medical Institute
Department Janelia Research Campus
Country United States 
Sector Academic/University 
PI Contribution We established a collaboration with Dr. Albert Cardone, HHMI Janelia Research Farm. It is based on our identification of a region in the insect brain that resembles deep homology to the mammalian cerebellum/midbrain hindbrain boundary region. A high impact publication is in progress.
Collaborator Contribution Dr. Cardona/Janelia Farm are providing us with exceptional serial TEM data that allow the analysis of all synaptic connections in the Drosophila larva.
Impact Ongoing
Start Year 2017
 
Description Swiss Genomics Consortium 
Organisation University of Fribourg
Country Switzerland 
Sector Academic/University 
PI Contribution We have initiated this project and provide the conceptual framework. We also provide essential research material.
Collaborator Contribution Our Swiss partners have used their facility for our collaborative RNA sequencing screen and an initial bioinformatics analysis with partners from the University of Bern.
Impact A large dataset that will be included in future publications.
Start Year 2019
 
Description VR Genome Browser 
Organisation The Wellcome Trust Sanger Institute
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution HAmmerheadVR is developing a virtual reality genome browser with the aim to make large datasets available for navigation and interrogation. The Sanger Centre contributes bioinformatic input (genome sequences) and we at KCL provide GWAS and RNA-seq datasets.
Collaborator Contribution See above.
Impact Grant application in progress.
Start Year 2016
 
Description Access to understanding 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact The Access to Understanding science-writing competition and the associated People's Choice award was run by Europe PubMed Central in partnership with the science team at The British Library. A short-listed contribution focused on our published work on TDP-43 and was presented during a public event at the British library, hence raised awareness about our translational research and its impact.

Requests about our research, invitations to speak to lay people about our translational research .
Year(s) Of Engagement Activity 2014
URL http://europepmc.org/AccesstoUnderstanding2014;jsessionid=GS6LUaLk5KfHmDMOcOb0.2
 
Description BBC Radio 5 Dementia Question Time 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Media (as a channel to the public)
Results and Impact BBC Radio 5 "Dementia Question Time" included the Minister for Care as well as a large number of charities. The Q/A was live on air and I was participating in the audience as a researcher affiliated with Alzheimer Research UK. The activity sparked questions and discussion.

Notable impact was an improved understanding of the situation of people with dementia.
Year(s) Of Engagement Activity 2014
 
Description Changing Conversation 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Around 20 academics met every month for this workshop organized by the Wellcome Trust. Its purpose was to "change conversation" with the aims to publicise the necessity, aims, methods and achievements of Science for Health and to make Science for Health more accessible to the public.

My research outline was recorded for a Youtube stub. Journalists showed interest to report.
Year(s) Of Engagement Activity 2010,2011
 
Description Dementia open day 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact I am part of the ARUK network and we hosted our annual open day with talks and discussions, including my own presentation. The talk sparked questions and discussion afterwards.

Better network for dementia research across greater London area.
Year(s) Of Engagement Activity 2015
 
Description Fundraising with MNDA 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? Yes
Geographic Reach National
Primary Audience Supporters
Results and Impact The decision is still awaited but it may result in a large donation by the Tolkin Trust to the MNDA, and thus to increased national funding into motor neuron disease research; potentially also into direct funding for my lab.

Potentially increased national funding into motor neuron disease research.
Year(s) Of Engagement Activity 2015
 
Description Guest editor 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact I have been invited to act as a guest editor for a special issue on "Drosophila Models for Neurodegenerative Diseases: Achievements and Prospects" in the "International Journal of Molecular Sciences"
Year(s) Of Engagement Activity 2020
URL https://www.mdpi.com/journal/ijms/special_issues/Drosophila_Models_Neuro
 
Description Guest editor Phil Trans R Soc B - Vol I 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact I was guest editor for two volumes of the Royal Society magazine "Philosophical transactions for the Royal Society B" which assemble commissioned articles that give a state of the art overview about the origin and evolution of the nervous system. Given the national and international interest and feedback (eg interview for Science), these two volumes spark a lot of interest and will be used as reference compendia for years to come.

Given the national and international interest and feedback (eg interview for Science), these two volumes spark a lot of interest and will be used as reference compendia for years to come.
Year(s) Of Engagement Activity 2015
URL http://rstb.royalsocietypublishing.org/content/370/1684
 
Description Guest editor Phil Trans R Soc B - Vol II 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact I was guest editor for two volumes of the Royal Society magazine "Philosophical transactions for the Royal Society B" which assemble commissioned articles that give a state of the art overview about the origin and evolution of the nervous system. Given the national and international interest and feedback (eg interview for Science), these two volumes spark a lot of interest and will be used as reference compendia for years to come.

Given the national and international interest and feedback (eg interview for Science), these two volumes spark a lot of interest and will be used as reference compendia for years to come.
Year(s) Of Engagement Activity 2015
URL http://rstb.royalsocietypublishing.org/content/371/1685
 
Description Interview for Science 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact 2 two page report by Elizabeth Pennisi in Science about brain evolution which sparked further interest about this topic in the media and public.

Measurable, increased interest in my papers as judged by downloads and views
Year(s) Of Engagement Activity 2015
URL http://www.sciencemag.org/content/350/6262/729.summary
 
Description Interview with Deutschlandfunk 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Media (as a channel to the public)
Results and Impact The radio station Deutschlandfunk interviewed me about new findings related to brain evolution.
Year(s) Of Engagement Activity 2016
URL http://www.deutschlandfunk.de/nerven-wie-ein-wurm-der-ursprung-des-gehirns.740.de.html?dram:article_...
 
Description Interview with Science 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I was interviewed by a senior editor (Elizabeth Pennisi) of the Journal Science to comment on recent findings in brain evolution. This was covered in a featured article in Science.
Year(s) Of Engagement Activity 2015
URL http://www.sciencemagazinedigital.org/sciencemagazine/13_november_2015?pg=17#pg17
 
Description MND Association Spring Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Participants in your research and patient groups
Results and Impact Talk sparked questions and discussion afterwards. Also people requested to visit our lab and get more information.

Talk was twittered and live-streamed which caused a lot of interest. The MNDA subsequently featured our work on their webpage.
Year(s) Of Engagement Activity 2014
URL https://mndresearch.wordpress.com/tag/dr-frank-hirth/
 
Description MRC Centre Newsletter 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Overview on my labs research written for a lay audience.

Public engagement
Year(s) Of Engagement Activity 2009
 
Description MRC Centre Open Day 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Members of my lab showed what they do to the public and media representatives.

The MRC Centre Open Day resulted in some donations.
Year(s) Of Engagement Activity 2008
 
Description MSc candidates visit 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Schools
Results and Impact Interested candidates can talk to members of my lab as two current members were recruited out of our MSc scheme.

Two former Msc students were awarded PhD studentships and stayed in my lab.
Year(s) Of Engagement Activity 2007,2008,2009
 
Description National advert for dementia research 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Media (as a channel to the public)
Results and Impact I was part of a TV clip of the ARUK Fightback campaign shown on TV but also in cinemas across the UK. The clip was targeted to the general public to raise awareness and interest in dementia research. Based on the feedback, it was a huge success which resulted in increased awareness and interest, but also in donations to further dementia research in the UK.

Based on the feedback, it was a huge success which resulted in increased awareness and interest, but also in donations to further dementia research in the UK.
Year(s) Of Engagement Activity 2015
URL https://www.youtube.com/watch?v=f0YLcLxB77Y
 
Description Panel; member ARUK KCL network 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact I am active board member of the Alzheimer's Research UK King's College London Network which promotes networking amongst dementia researchers at King's, runs a pilot grant-funding scheme for dementia research, and participates in public engagement activities including the ARUK Open Day at the IoPPN.
Year(s) Of Engagement Activity 2017,2018,2019
URL https://www.alzheimersresearchuk.org/for-researchers/network-centres/kings-college-london-network-ce...
 
Description Parkinson's UK Annual Visit 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Participants in your research and patient groups
Results and Impact I gave an overview about our project that is funded by the PDS; members of the PDS were shown around (site visit) and actively engaged in our research.

Continued funding.
Year(s) Of Engagement Activity 2009,2010,2011
 
Description Radio Interview (BBC Radio 4 "Today") 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Type Of Presentation Keynote/Invited Speaker
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact BBC Radio 4 "Today"'s programme interview on recent publication in "Science", which sparked attention by the public.

Invitation as plenary speaker to conference in South-Korea;
Invitation as speaker to ESF-FENS conference on "Neurobiology of Action";
Invitation as speaker for "Neuroethology" conference in Japan 2014;
Invitation to act as Scientific Committee member for "Insect Science" conference in Amsterdam 2014
Year(s) Of Engagement Activity 2013
URL http://www.youtube.com/watch?v=_16JqOLLdX4
 
Description Scientific adviser 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact I was invited to act as scientific advisor for the 5th Annual Neuroscience R&D Technologies Conference which was attended by pharmaceutical industries, small companies and academics to hear about recent technical and conceptual developments in the neurosciences.
Year(s) Of Engagement Activity 2019
URL https://events.marketsandmarkets.com/5th-annual-marketsandmarkets-neuroscience-r-d-technologies-conf...