Sphingosine-1-phosphate signalling in hearing loss

Abstract

Progressive age-related hearing loss is very common in the population, affecting the quality of life of a large proportion of people as they get older and their families. It can start at any age. There is no medical treatment available, and hearing aids have limited value in helping to understand speech in difficult listening conditions or noisy backgrounds or to enjoy music. Hearing impairment can be profoundly isolating, both socially and economically. However, despite efforts to understand the underlying biological processes leading to deafness in humans, we still have very little knowledge of these processes, making it difficult to develop alternative treatments to stop or reverse the progression of hearing loss. In this project, we have turned to the mouse to get a better understanding of one type of pathology: a failure to maintain the normal electrochemical environment around the sensory hair cells of the cochlea leading to deafness. Mice have inner ears that are very similar both in structure and in physiology to human ears, and many of the genes we have found to be involved in deafness in mice also are involved in deafness in humans, and vice versa. Therefore we anticipate that our findings will apply directly to human hearing loss. The proposal aims to study the role of a pathway that normally maintains lipids including sphingosine-1-phosphate (S1P) in correct balance in the body. S1P is also a bioactive lipid, with signalling properties that influence the behaviour of various cell types. We know the S1P pathway is important in hearing because mutations in three different genes involved, encoding an enzyme in the pathway (Sgms1), a transporter of S1P (Spns2) and a receptor for S1P (S1pr2) all lead to progressive deafness in the mouse. The proposed research will analyse the pathological process in detail to discover the earliest structural and physiological changes in the cochlea, establish which tissue types within the cochlea require S1P signalling to function normally, and use genetic approaches to ask if the hearing loss can be halted or reversed as a proof-of-principle. These findings will lay the foundations for the development of pharmacological approaches to manipulate S1P signalling as a treatment for progressive hearing loss.

Technical Summary

We know that sphingosine-1-phosphate (S1P) signalling is required for hearing because mutations in three genes in this pathway lead to progressive deafness in the mouse. Analysis of these mice suggests that maintenance of the normal electrochemical environment of the fluid bathing sensory hair cells of the cochlea is at fault.
The main objective is to ask if manipulating S1P signalling can reverse hearing loss as a proof-of-principle. The specific questions are:
1. What are the mechanisms underlying progressive hearing loss in mice with mutations affecting S1P signalling?
2. Can progressive hearing loss in S1P-associated deafness be halted or reversed?
3. Is S1P signalling involved in deafness resulting from other triggers for hearing loss?
The first question will be addressed by detailed analysis of the time course of structural and physiological changes in two of the affected lines of mouse (one with rapid and one with slower progression of hearing loss) and identification of the cell types within the cochlea that require S1P signalling using a genetic approach to target gene deletion to specific cells and at specific ages. These findings will tell us which cells we need to target for treatment and when.
The second question involves using a genetic approach to restore normal gene function before, during and after the onset of hearing loss to ask if it can be prevented, halted or even reversed after it has become established. These experiments will aim to determine a critical period for treatment to avoid hearing loss.
The third question will bring in a mouse line with a defect in maintenance of the cochlear fluids due to a different cause, unrelated to S1P. In this mouse line, S1P signalling will be manipulated using genetics to ask if boosting S1P activity can improve hearing irrespective of the specific trigger. If so, then manipulating S1P signalling pharmacologically may be beneficial in a much broader range of cases of human deafness.

Planned Impact

The proposed project is intended to produce scientific data of excellent quality that will be at the leading edge of efforts to understand the effects of aging on the ear and progressive hearing loss.
The main route to academic impact will be through regular talks at scientific and clinical conferences aimed at a wide range of relevant audiences together with publication in widely-read journals in open access format.
The main groups to benefit include health care professionals, including clinical geneticists, otolaryngologists and audiologists, who will benefit by developing a broader understanding of what possibilities will be available in the future to offer their patients.
The societal and economic impact will result from the application of our anticipated findings to the identification of new targets for development of therapies that will slow down or reverse the progress of hearing loss. The benefits to society will be realised by the people directly affected by the increasing isolation that accompanies hearing loss as well as their families who struggle to communicate with them. Economic benefits will come in the longer term from the development of new therapeutic areas within pharmaceutical companies and small biotechs, as well as from improved economic activity opportunities for the individuals affected by hearing loss.

Publications

10 25 50
 
Description Membership of Royal Society Science Policy Committee
Geographic Reach National 
Policy Influence Type Membership of a guideline committee
 
Description Assisted transfer strategic award
Amount £1,500,000 (GBP)
Funding ID WT100669MA 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2012 
End 09/2018
 
Description Determining the limits for reversing hearing loss
Amount £1,947,704 (GBP)
Funding ID 221769/Z/20/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2021 
End 02/2026
 
Description Discovery grant
Amount £200,000 (GBP)
Funding ID G100_STEEL 
Organisation Action on Hearing Loss 
Sector Charity/Non Profit
Country United Kingdom
Start 04/2021 
End 08/2025
 
Description Exploration of lipidomics as a diagnostic tool for different forms of hearing loss
Amount £10,000 (GBP)
Funding ID F97 
Organisation Action on Hearing Loss 
Sector Charity/Non Profit
Country United Kingdom
Start 04/2019 
End 03/2020
 
Description MRC project grant
Amount £640,097 (GBP)
Funding ID MR/N012119/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 07/2016 
End 06/2019
 
Title Developing a treatment method to reduce hearing loss 
Description We developed a method for treating a mouse mutant with a substance to reduce the progression of hearing loss. 
Type Of Material Model of mechanisms or symptoms - mammalian in vivo 
Year Produced 2018 
Provided To Others? No  
Impact We developed a treatment route that did not adversely affect the health of the mouse, carried out the dosing, and assessed the outcome using electrophysiological measurements. 
 
Title Developing the protocol for lipidomics analysis of mouse inner ear 
Description We developed a protocol to assay lipid composition in a very small sample, the mouse inner ear. 
Type Of Material Technology assay or reagent 
Year Produced 2017 
Provided To Others? No  
Impact We succeeded in getting useful information about lipid changes during hearing deterioration in a mouse mutant inner ear. 
 
Title Flow cytometry of inner ear cells 
Description We developed a method for isolating and quantifying immune cells within the inner ear using flow cytometry. 
Type Of Material Technology assay or reagent 
Year Produced 2018 
Provided To Others? No  
Impact We continue to develop this tool but have promising pilot data. We plan to apply this protocol for cell sorting for other projects. 
 
Title Deafness gene list 
Description Manually-curated catalogue of genes known to be involved in hearing impairment in humans and/or mouse 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact This list has been used to prioritise candidate genes for further analysis. 
 
Description Human diagnostic tools using electrophysiological and psychophysical approaches 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution We are carrying out the primary research on mouse mutants with well-characterised cochlear pathologies.
Collaborator Contribution Our collaborator in Manchester is advising on potential human techniques for differentiating different forms of cochlear pathology.
Impact Involves both mouse and human electrophysiology and human psychophysics. No outputs yet.
Start Year 2017
 
Description Human exome sequence analysis for age-related hearing loss 
Organisation Medical University of South Carolina
Country United States 
Sector Academic/University 
PI Contribution We are analysing the exome sequence, selecting candidate variants, knocking these into mice and investigating the effects on hearing.
Collaborator Contribution The collaborators have assembled a large cohort of people with very well-characterised hearing function, mostly with hearing impairment, and collected samples for exome sequencing.
Impact One publication, Lewis et al 2018. Yes, highly multi-disciplinary.
Start Year 2017
 
Description Industry collaboration on S1P signalling as a potential drug target for hearing loss 
Organisation Decibel Therapeutics
Country United States 
Sector Private 
PI Contribution We have studied the effects on hearing of three different small molecules (one antagonist, two antagonists) in a mouse mutant line.
Collaborator Contribution The partner has provided expertise and information on pharmacokinetics.
Impact None yet
Start Year 2019
 
Description Lipidomics analysis of multiple classes of lipids in mutant mouse samples 
Organisation Babraham Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution We have collected samples for a pilot study to check the feasibility of carrying out lipidomics analysis on very small samples. We have discussed and agreed the overall experimental design. We continue to collect samples ready for the full study.
Collaborator Contribution The Babraham group have tested the small samples as a pilot and found that the analysis is possible. They bring their expertise in mass spec and lipid analysis to the collaboration, and contributed to the agreed experimental design.
Impact This collaboration is in its early stages so nothing to report yet.
Start Year 2018
 
Title Popcorn, a software for linking genes to upstream regulators in a network 
Description Popcorn, a software for linking genes to upstream regulators in a network. Used for analysis of networks, linking genes that are not otherwise discoverable using existing software. The details will be published soon, but it is available on GitHub now. Software written and developed by Dr Morag Lewis. 
Type Of Technology Software 
Year Produced 2020 
Open Source License? Yes  
Impact We have used this software to draw up a network, soon to be published (Lewis et al). 
 
Title Popcorn, a software for linking genes to upstream regulators in a network 
Description Popcorn, a software for linking genes to upstream regulators in a network. Used for analysis of networks, linking genes that are not otherwise discoverable using existing software. The details will be published soon, but it is available on GitHub now. Software written and developed by Dr Morag Lewis. 
Type Of Technology Software 
Year Produced 2020 
Open Source License? Yes  
Impact We have used this software to draw up a network, soon to be published (Lewis et al). 
 
Description AoHL supporters laboratory visit 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Supporters
Results and Impact We hosted a visit of around 30 active supporters of the charity Action on Hearing Loss plus 6 charity staff, who visited the labs, watched demonstrations of research methods, listened to talks and posters, and discussed our research.
Year(s) Of Engagement Activity 2018
 
Description Participation and presentation of a talk at a Zellweger syndrome patient group support weekend 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact I attended a weekend retreat organised for families affected by Zellweger disease, presented a talk about hearing loss in Zellweger and answered questions at the formal session as well as informally during the weekend.
Year(s) Of Engagement Activity 2019
 
Description RNID supporters' visit to laboratory 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Supporters
Results and Impact Three people attended a visit to my laboratory including two RNID (charity) staff and one key supporter of the charity, to hear a talk about hearing and deafness followed by a laboratory visit with demonstrations from the team.
Year(s) Of Engagement Activity 2022
 
Description RNID supporters' visit to laboratory 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Supporters
Results and Impact Ten people attended a visit to my laboratory including two RNID (charity) staff and eight supporters of the charity, to hear a talk about hearing and deafness followed by a laboratory visit with demonstrations from the team.
Year(s) Of Engagement Activity 2022
 
Description Women in Science event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Supporters
Results and Impact Around 40 people attended an evening event on "Women in Science" organised by Action on Hearing Loss. Many were scientists supported by the charity, others were active or potential supporters. There were 4 talks and Karen Steel gave one of these. There was lively discussion afterwards, and the supporters expressed appreciation of the work done.
Year(s) Of Engagement Activity 2018