Circadian rhythms and the control of NRF2-based antioxidant signalling as a therapeutic target in dermal tissue repair and pathological wound healing

Lead Research Organisation: University of Liverpool
Department Name: Institute of Ageing and Chronic Disease

Abstract

Pathological wound healing is associated with ageing and many chronic diseases. It is one of the major medical burdens in the developed world, contributing towards leading causes of death and disease worldwide. The stages of wound healing normally progress in a predictable, timely manner; if they do not, healing may progress inappropriately to either a chronic wound such as diabetic ulcer or fibrotic scarring such as scleroderma. The prevalence of chronic wounds and fibrotic pathologies arrives at the number of ~80 million, which increases to >100 million if we include fibrosis associated with surgical procedures. Current treatments for chronic wounds and fibrotic scarring have limited success, so better understanding of biological mechanisms that promote healing whilst preventing scarring is urgent to achieve better therapies.

Research carried out by scientists around the world as well as our own laboratory has recently discovered a crucial role for biological clocks in optimal wound healing and in curbing fibrotic scarring following injury. Biological clocks are timing mechanisms in our body that generate 24h rhythms in physiology and behavior, such as sleep/wake cycles, body temperature and hormone levels. They exist in almost all tissues and cells in our body. Their disruption due to shift work and ageing is a strong risk factor for chronic diseases. Our new pilot data using rodent models shows that there is a robust day/night variation in skin wound healing rates so that skin heals faster when injured during the night then when injured during the day. This faster healing at night is associated with increased levels of genes involved in production and organisation of matrix, a very important component for closing the wound. We have also discovered that antioxidant protection in our cells varies between day and night, and has an important role in faster night-time healing following injury. Even more, small, drug-like molecules capable of boosting antioxidant levels in our cells have a greater efficiency when used at the right time of day. These observations suggest exciting new ways to tackle pathological wound repair mechanisms.

In this new project, we will answer the main question as to whether the biological clock present in key cells involved in wound healing (called fibroblasts) is critical for daily variation in repair capacity that we observed in our pilot studies. We will make use of two genetically modified rodent models 1) one in which we can visualise (by fluorescent tags) a matrix gene (called collagen) specifically activated in fibroblast cells and 2) the other in which we have genetically deleted the clock gene specifically in fibroblast cells. Using these unique rodent models, we will be able to monitor temporal changes in clock gene activity and matrix organisation within wounds. This research will uncover critical importance of robust clocks within key wound healing cells for time-of-day variation in healing rate and organisation of optimal wound repair.

Furthermore, we will take advantage of advanced molecular biology tools to find out which genetic mechanisms biological clocks use to regulate matrix genes important in healing such as collagen. Using high-tech biochemical approaches, we will further find out whether biological clocks help our cells 'tell the time' when to produce the right amounts of antioxidants to fight off rises in dangerous free radicals following injury. Finally, we will test whether antioxidant-based chronotherapy (giving treatments according to one's body clock) has beneficial healing effects in chronic wound or scarring conditions such as diabetes and scleroderma. To test this, we will use rodent models of diabetes as well as skin tissue biopsies and cells from patients with Scleroderma. These new studies will provide crucial evidence to support future studies pinning down biological clocks as a new therapeutic target for the management of chronic wounds and scarring.

Technical Summary

This proposal will determine whether and how genetic targeting of circadian clocks in fibroblasts modulates healing responses during cutaneous wound repair, and test novel time-scheduled pharmacological interventions for efficacy in treating pathological wound repair.

Using unique fluorescent collagen 1 reporter as well as fibroblast-specific clock-deficient mice, we will monitor temporal changes in fibroblast activation during wound repair. Wounds from mice injured at different circadian phases will be analysed for a range of histological parameters (e.g. collagen deposition) and matrix gene expression. Purified fibroblasts from wounds will be used for ex vivo culture. Parallel analyses will include clock gene expression, proliferation/migration assays as well as analysis of candidate signalling pathways by targeted PCR arrays. To identify circadian elements that drive transcriptional regulation of matrix genes such as collagen 1, we will perform advanced in vitro molecular studies to determine collagen 1 promoter activity following over-expression or knockdown of clock transcription factors and NRF2. We will confirm in vitro findings both in mouse tissues and in human Scleroderma fibroblasts.

To test whether circadian gating mechanism in fibroblasts couples redox signalling to NRF2 antioxidant program during wound repair, we will use state-of-the-art techniques for measuring reactive oxygen species (ROS), NRF2 activity and oxidative damage markers in wound tissues. To determine sub-cellular sites of ROS production, in situ imaging with specific ROS probes will be used in explanted wound fibroblasts.

Finally, we will test whether chronotherapy is more effective in improving wound repair in both animal and human translational models. Following in vitro optimisation studies, we will test whether time-scheduled NRF2 activator improves delayed healing in a preclinical model of type II diabetes and in human fibroblasts from Scleroderma patients.

Planned Impact

Chronic tissue injuries associated with pathological wound healing, including chronic wounds, result in pain and disability for millions of people around the world. As our population continues to age and the incidence of diabetes increases, it is important that we address the pathological wound healing so that people can lead their lives in a more productive manner. This work aims to better understand circadian control of skin tissue repair and, in doing so, develop novel chrono-therapeutic antioxidant approaches to treat chronic wounds and connective tissue diseases such as scleroderma. This will benefit other scientists in the fields of dermal repair, skin biology, redox signalling, connective tissue diseases, ageing, diabetes and circadian physiology. Furthermore, skin tissue engineers will be able to use and build on the knowledge of dermal repair that the project will define. The genes and cells examined in the project perform essential roles in tissues throughout the body, which will be of interest to biological researchers in these diverse areas. These impacts will occur over a period of months or years as the work is disseminated at conferences and in scientific literature.

The project will impact upon society. Improved understanding of circadian tissue repair mechanisms will be the basis upon which treatments for individuals suffering from chronic wounds will be developed. This applies particularly to those likely to suffer from leg/foot chronic ulcers (older people and patients with diabetes or scleroderma). Such treatments will relieve pain, immobility and reduce risk of amputation, vastly improving quality of life. A further consequence of better treatments for chronic wounds include lower treatment costs and a reduced care burden within the National Health Service. In addition, the UK economy would benefit through savings in disability and mobility benefit payments as would employers in the public and private sectors as a result of reduced sickness pay and lost working hours. These are long-term societal impacts (years or decades), but stakeholders can be informed of the pipeline for the development of these treatments in the shorter term (months/years), which could shape policy. Stakeholders will include politicians, industry leaders, clinicians, healthcare managers and charities such as Diabetes UK, The Scleroderma Society, Age UK. Impact of the work on the general public can occur continuously and will raise awareness of scientific research. This can be implemented through open days where the public can meet scientists, through hosting work experience placements and by taking part in outreach activities in local schools.

The mechanisms determined in this work will be of interest to industry sectors (pharmaceutical, personal care) that are keen to develop products that can improve skin tissue repair and treat chronic wounds as well as fibrotic scarring. The project will also develop novel antioxidant-based chrono-therapeutic approaches. The findings have the potential to be commercially exploitable leading to the production of new spin out companies and to partnership with or expansion of existing enterprise. The project will employ a post-doctoral research associate and a research technician for three years, training them in numerous molecular and in vivo techniques. In addition, they will gain transferable skills such as science writing, data presentation, project management and commercialisation. This will result in individuals who possess skillsets that would benefit employers in the UK public or private sector.

Timescales for these impacts could be measured in months and years for public engagement and academic beneficiaries. Applying the findings to clinical treatments and commercialisation to a level that may benefit the general public could take 10 years or more and the further development of these treatments to a scale where they are able to affect welfare on a national scale may take decades

Publications

10 25 50

 
Title Cellular Vessel 
Description Through this film, it is depicted the desynchronisation between the rhythms of the expanding port of Liverpool, and the biological rhythms of local residents 
Type Of Art Film/Video/Animation 
Year Produced 2022 
Impact The film was shown to the two local communities in Liverpool, leading to discussions with local residents and their participation in the video making. It led to raising awareness of social determinants of ageing that impact on their daily lives and healthspan, including the highest risk of chronic lung disease in the UK. 
URL https://www.liverpool.ac.uk/sociology-social-policy-and-criminology/research/research-projects/dysrh...
 
Description training of Mres Clinical Sciences researchers including majority of final year Medical Degree students
Geographic Reach National 
Policy Influence Type Influenced training of practitioners or researchers
 
Description training of practitioners or researchers -MRes Clinical Sciences
Geographic Reach National 
Policy Influence Type Influenced training of practitioners or researchers
Impact Influenced training of practitioners or researchers - training of MRes Clinical Sciences researchers including majority of intercalating Medical Degree students
 
Description Circadian Rhythms in the light of COVID-19: Formulating optimal time-of-day regimens for antiviral drugs using human 3D models and in silico modelling
Amount £343,560 (GBP)
Funding ID BB/W010801/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 11/2021 
End 05/2023
 
Description Circadian disruption and fibrosis progression in Systemic Sclerosis: towards improved prognosis and chrono-based therapeutic stratification
Amount £129,781 (GBP)
Funding ID CF-2021-2 133 
Organisation Rosetrees Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 12/2022 
End 12/2024
 
Description Circadian rhythms in neuromuscular function: the effects of age and exercise
Amount £180,000 (GBP)
Organisation Government of Libya 
Sector Public
Country Libya
Start 09/2022 
End 09/2025
 
Description EcMagine': Extracellular Matrix ageing across the life course interdisciplinary research network
Amount £176,276 (GBP)
Funding ID BB/W018314/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 02/2022 
End 02/2024
 
Description Exploring new avenues in breast cancer research: Redox and metabolic reprogramming of cancer and associated adipose tissue
Amount € 300,000 (EUR)
Organisation University of Belgrade 
Sector Academic/University
Country Serbia
Start 02/2022 
End 02/2025
 
Description Investigating the mechanisms and therapeutic potential of targeting circadian clocks in collagen VI myopathies
Amount £70,688 (GBP)
Funding ID 21GRO-PG12-0532 
Organisation Muscular Dystrophy UK 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2022 
End 07/2023
 
Description Time to heal: circadian regulation of chronic wound repair
Amount £80,000 (GBP)
Organisation Liverpool John Moores University 
Sector Academic/University
Country United Kingdom
Start 02/2022 
End 02/2025
 
Title Circadian tissue and cell timecourses 
Description We have harvested and preserved precious tissue and cell samples for both biochemistry and histology from circadian time-courses from different environmental conditions, ages, genotypes and gender. 
Type Of Material Biological samples 
Year Produced 2022 
Provided To Others? Yes  
Impact This will expand our outputs and collaborations and enable multiple forms of scientific investigation. 
 
Title Clock reporter cell line for drug screening 
Description This is essential tool for reporting biological oscillations in real time and using it for drug screening 
Type Of Material Cell line 
Year Produced 2022 
Provided To Others? No  
Impact It will expand our ability to test time-of-day drugs and treatments in mammalian cells ex vivo 
 
Title Human tissue biopsies 
Description We have developed a method for measuring biological cycles in real time from human biopsies. This will help progress research in examining disruption of biological cycles as a result of disease, ageing or injury and can be used as a outcome measure. 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2022 
Provided To Others? Yes  
Impact We have developed a method for measuring biological cycles in real time from tissue biopsies. This will help progress research in examining disruption of biological cycles as a result of disease, ageing or injury and can be used as a outcome measure. 
 
Title Plasmid tools for assessing circadian oscillations 
Description Essential tool for reporting biological oscillations in real time 
Type Of Material Model of mechanisms or symptoms - in vitro 
Year Produced 2022 
Provided To Others? Yes  
Impact It will expand our ability to test time-of-day drugs and treatments in mammalian cells in vitro 
 
Title Mathematical model of clock oscillations 
Description The model in question is addressing a mathematical challenge that will provide a first ever model of these interactions. The identification of a suitable detailed clock model will be made was made following reviews of most recent models. A detailed model of different molecular pathways was combined to the clock model to generate a more complete model which we can then use to generate further experimental predictions. Understanding of these network interactions between transcription factors and the circadian timing system will aid future development of novel chrono-based drug therapies for a number of age-related diseases. 
Type Of Material Computer model/algorithm 
Year Produced 2023 
Provided To Others? Yes  
Impact It will expand our ability to predict outcomes of time-of-day drug treatments, interventions and molecular pathway interactions. 
 
Description CIMA ageing network 
Organisation Newcastle University
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, resources and data.
Collaborator Contribution We share expertise, resources and data.
Impact This is a multi-disciplinary collaboration of basic scientists, clinicians and industrial partners. We have published joint publications and obtained joint research funding including industrial pump-priming award as well as an omics profiling award.
Start Year 2022
 
Description CIMA ageing network 
Organisation University of Liverpool
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, resources and data.
Collaborator Contribution We share expertise, resources and data.
Impact This is a multi-disciplinary collaboration of basic scientists, clinicians and industrial partners. We have published joint publications and obtained joint research funding including industrial pump-priming award as well as an omics profiling award.
Start Year 2022
 
Description CIMA ageing network 
Organisation University of Sheffield
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, resources and data.
Collaborator Contribution We share expertise, resources and data.
Impact This is a multi-disciplinary collaboration of basic scientists, clinicians and industrial partners. We have published joint publications and obtained joint research funding including industrial pump-priming award as well as an omics profiling award.
Start Year 2022
 
Description Nevragenics-led retinoid network UK 
Organisation Durham University
Country United Kingdom 
Sector Academic/University 
PI Contribution We have shared resources, data and expertise. It is a multi-disciplinary collaboration involving chemistry, maths, molecular biology, pharmacology, chronobiology. We have obtained industrial pump-priming funding from UKRI and are in the process of applying for a KTP through Innovate UK.
Collaborator Contribution We have shared resources, data and expertise. It is a multi-disciplinary collaboration involving chemistry, maths, molecular biology, pharmacology, chronobiology. We have obtained industrial pump-priming funding from UKRI and are in the process of applying for a KTP through Innovate UK.
Impact We have shared resources, data and expertise. It is a multi-disciplinary collaboration involving chemistry, maths, molecular biology, pharmacology, chronobiology. We have obtained industrial pump-priming funding from UKRI and are in the process of applying for a KTP through Innovate UK.
Start Year 2022
 
Description REFRAME redox-metabolic network 
Organisation University of Belgrade
Department First Surgical Clinic, Clinical Center of Serbia, University of Belgrade, Serbia
Country Serbia 
Sector Academic/University 
PI Contribution We have shared expertise, resources and data.
Collaborator Contribution We have shared expertise, resources and data.
Impact We are a multidisciplinary network involving redox biology, biochemistry, chronobiology, imaging and metabolic science. We have published articles together and disseminated our work at scientific conferences as invited speakers, symposium chairs and round table panelists.
Start Year 2022
 
Description UKRI-funded ECMAge ageing network 
Organisation Newcastle University
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Collaborator Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Impact We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs. We are planning to contribute a joint manuscript on the current information in the field of ECMageing. We have already contributed to scientific dissemination activities on several national and international conferences and learned societies. We are a multi-disciplinary team involving chronobiology, maths, systems biology, mechano biology, biochemistry and tissue engineering.
Start Year 2022
 
Description UKRI-funded ECMAge ageing network 
Organisation University of Glasgow
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Collaborator Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Impact We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs. We are planning to contribute a joint manuscript on the current information in the field of ECMageing. We have already contributed to scientific dissemination activities on several national and international conferences and learned societies. We are a multi-disciplinary team involving chronobiology, maths, systems biology, mechano biology, biochemistry and tissue engineering.
Start Year 2022
 
Description UKRI-funded ECMAge ageing network 
Organisation University of Liverpool
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Collaborator Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Impact We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs. We are planning to contribute a joint manuscript on the current information in the field of ECMageing. We have already contributed to scientific dissemination activities on several national and international conferences and learned societies. We are a multi-disciplinary team involving chronobiology, maths, systems biology, mechano biology, biochemistry and tissue engineering.
Start Year 2022
 
Description UKRI-funded ECMAge ageing network 
Organisation University of Manchester
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Collaborator Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Impact We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs. We are planning to contribute a joint manuscript on the current information in the field of ECMageing. We have already contributed to scientific dissemination activities on several national and international conferences and learned societies. We are a multi-disciplinary team involving chronobiology, maths, systems biology, mechano biology, biochemistry and tissue engineering.
Start Year 2022
 
Description UKRI-funded ECMAge ageing network 
Organisation University of Nottingham
Country United Kingdom 
Sector Academic/University 
PI Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Collaborator Contribution We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs.
Impact We share expertise, data, resources and get involved in outreach events. I am on the network operational group and contribute to regular meeting updates with set agenda, including pump-priming opportunities and training for ECRs. We are planning to contribute a joint manuscript on the current information in the field of ECMageing. We have already contributed to scientific dissemination activities on several national and international conferences and learned societies. We are a multi-disciplinary team involving chronobiology, maths, systems biology, mechano biology, biochemistry and tissue engineering.
Start Year 2022
 
Title Chrono-therapy for smarter use of retinoids 
Description Novel synthetic retinoids currently tested in preclinical models using circadian medicine approaches. It is expected that this will inform the clinical trial in 2024 on neuromuscular degeneration as well as clinical studies testing their use in other diseases. 
Type Therapeutic Intervention - Drug
Current Stage Of Development Refinement. Non-clinical
Year Development Stage Completed 2022
Development Status Under active development/distribution
Impact This is a lead Nevrargenics drug for the treatment of neurodegenerative and neuromuscular disorders-it will improve the company's delivery of the product for many people with said disorders. It is also expected to have wider uses in connective tissue diseases. 
 
Description Mechanisms and interventions in ageing 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact The purpose was to stimulate thinking and improve understanding. I led one of the four round table discussions as part of the UKRI-funded ECM Age network group. The round table discussion was on the mechanisms and interventions in ageing, which stimulated participants to share their insights and experiences and inform further research. This activity will be repeated in 2023. It led to some joint pump-priming research applications with feedback from public and participants.
Year(s) Of Engagement Activity 2022
 
Description Meet the Scientist event at the World Museum, Liverpool 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact The purpose was to to stimulate thinking and share information. The event engaged lots of kids, parents and grandparents, measured their grip strength and heart rate in the morning and afternoon, which sparked their interest in body clocks. The outcome was to an invite to repeat the activity at the Museum in 2023. Also, this activity was carried out at a smaller scale in a local school as a follow-up.
Year(s) Of Engagement Activity 2022
 
Description Utilising chronobiology in assessing sleep quality in chronic disease 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact The purpose was to share information and inform decision making. I presented a talk on sleep quality to a patient group as part of a workshop on lifestyle interventions in chronic disease; this led to patient interest in the research carried out, discussion on patient experiences and the impact of medication and/or condition on sleep quality; we then formulated important research questions for further research.
Year(s) Of Engagement Activity 2022