H Mwandumba, CoM, Characterisation of the breakdown in immune competence of the lung that favours development of tuberculosis in HIV-infected adults

Lead Research Organisation: Liverpool School of Tropical Medicine
Department Name: Clinical Sciences

Abstract

Tuberculosis (TB) remains a major health problem in sub-Saharan Africa where the morbidity and mortality due to this infection are high, predominantly as a consequence of human immunodeficiency virus (HIV) infection. While it is unequivocal that infection with HIV results in loss of immune control of Mycobacterium tuberculosis (Mtb) by the host, it is unclear if the increased risk of TB disease is due solely to depletion of CD4+ T-cells (a type of immune cells), or due to the loss of other immune functions. For instance, the risk of developing active TB starts to increase soon after HIV infection, even before significant depletion of CD4+ T-cells in peripheral blood. Furthermore, antiretroviral therapy (ART)-mediated immune recovery does not eliminate the increased risk of TB in HIV-infected individuals, indicating that reconstitution of the CD4+ T-cell subset alone is not sufficient to recover full protection against active TB. Accumulating evidence also indicates that in regions of high Mtb transmission, many TB cases in HIV-infected individuals result from recent Mtb infections and not reactivation of pre-existing infection. Since the majority of Mtb infections are acquired through the respiratory route, this suggests strongly that the lung environment in HIV-infected individuals is altered to permit the establishment and progression of new Mtb infections.

In view of existing limitations in current understanding of the pulmonary protective immune response against Mtb infections in humans, this project will utilize human lung immune cells and ex vivo experimental infections with characterized, reporter Mtb strains to probe the mechanistic basis underlying the successful control of Mtb in the lung. It will also explore the impact of HIV co-infection and ART on immune competence of the lung in general, and the Mtb-limiting immune response
in particular. The project will capitalize on the long-standing links between the Liverpool School of Tropical Medicine, Cornell University and the Malawi-Liverpool-Wellcome Trust Clinical Research Programme (MLW)'s strongly integrated clinical research base, high quality laboratories and excellent training infrastructure. It will strengthen existing collaborations and forge new ones to promote the development and transfer of cutting-edge technology to Malawi. By exploiting the HIV-mediated breakdown in immune control of Mtb, the project is bold and highly innovative in its approach to gain a comprehensive understanding of the optimal pulmonary immune environment for successful control of this pathogen. It will charter new areas of investigation and has tremendous potential to contribute to the field important new insights that will impact the design and implementation of public health interventions for control of TB in both HIV-uninfected and HIV-infected individuals.

Technical Summary

Co-infection with Mycobacterium tuberculosis (Mtb) and human immunodeficiency virus (HIV) constitutes a huge burden on national healthcare services in sub-Saharan Africa where up to 70% of tuberculosis (TB) patients are HIV-infected. TB is now the leading cause of death of adults living with HIV in this region. This underscores the need for a better understanding of the mechanisms underlying host resistance and susceptibility to TB, which is central to the development of new approaches to prevent and/or treat HIV-associated TB.

The risk of developing TB starts to increase early following HIV infection, even before significant depletion of CD4 T lymphocytes occurs in peripheral blood and persists during effective antiretroviral therapy (ART), indicating that the CD4 T lymphocyte count is not the only determinant of increased TB risk, and ART-mediated quantitative reconstitution of this cell subset alone is not sufficient to recover full protection against active TB.

We propose conducting ex vivo infections of human alveolar macrophages (AMs) with fluorescent reporter Mtb strains to probe the mechanistic basis underlying the successful control of Mtb infection in the lung. The use of reporter bacterial strains is significant because they are immunologically unbiased readouts of host cell function. We will explore the impact of HIV co-infection and ART on the AM anti-mycobacterial response. By exploiting the HIV-mediated breakdown in immune control of Mtb infection in the lung, the project is bold and highly innovative in its approach to gain a comprehensive understanding of the optimal pulmonary immune environment for successful control of Mtb infection. It has tremendous potential to generate new insights that will impact the design and implementation of public health interventions in the control of TB in both HIV-uninfected and HIV-infected individuals.

Planned Impact

Current understanding of the immune response underlying successful control of Mtb infections in humans is incomplete. This knowledge gap has contributed, at least in part, to the lack of significant progress in the development of new and effective vaccines against TB. This project will address this problem by exploring new areas of investigation. It is ironic but the HIV-mediated loss of immune control of Mtb infection in the lung actually offers a unique opportunity to probe the mechanistic basis underlying the successful control of TB by airway immune cells. This is significant because it is likely to provide invaluable insights into the nature of the protective immune response that we may wish to induce using interventions such as new TB vaccines. It is my strong belief that to reduce the burden of TB in HIV-infected and HIV-uninfected individuals, it is essential that the relevant mechanisms underlying the pathogenesis of both infections are understood well and taken into account when designing and implementing public health interventions. This project will introduce improve current understanding of immune control of TB in the lung and may contribute important knowledge to ongoing efforts to develop new drugs and vaccines for TB.

Publications

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Aston SJ (2019) Etiology and Risk Factors for Mortality in an Adult Community-acquired Pneumonia Cohort in Malawi. in American journal of respiratory and critical care medicine

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Boliar S (2019) Inhibition of the lncRNA SAF drives activation of apoptotic effector caspases in HIV-1-infected human macrophages. in Proceedings of the National Academy of Sciences of the United States of America

 
Description Are HIV-1-infected alveolar macrophages productive sites of viral persistence?
Amount $909,300 (USD)
Funding ID 4R33AI136097-03 
Organisation Cornell University 
Sector Academic/University
Country United States
Start 08/2020 
End 07/2023
 
Description Effect of HIV infection on the function of CD8+ polycytotoxic T lymphocytes in human tuberculosis
Amount € 444,200 (EUR)
Funding ID STE 925/4-1 
Organisation German Research Foundation 
Sector Charity/Non Profit
Country Germany
Start 03/2021 
End 02/2024
 
Description Federation of African Immunological Society Travel scholarships
Amount $3,000 (USD)
Organisation Bill and Melinda Gates Foundation 
Sector Charity/Non Profit
Country United States
Start 12/2017 
End 12/2017
 
Description Infectious Diseases in Africa Symposium Travel Scholarships
Amount $5,000 (USD)
Organisation National Institutes of Health (NIH) 
Sector Public
Country United States
Start 09/2017 
End 09/2017
 
Description Lung immune function in human TB infection and its perturbation by HIV-1
Amount $3,300,000 (USD)
Funding ID 1R01AI155319-01 
Organisation Cornell University 
Sector Academic/University
Country United States
Start 06/2020 
End 05/2025
 
Title Fluorescent Mycobacterium tuberculosis (Mtb) reporter strains 
Description We have optimised the use of fluorescent Mtb reporter strains to study the pathogenesis of Mtb in human phagocytic cells. The reporters were developed by our collaborator at Cornell University. 
Type Of Material Cell line 
Year Produced 2017 
Provided To Others? Yes  
Impact Many laboratories around the world are using the fluorescent Mtb reporter strains to study the biology of Mtb infections in different animal species and cells. 
 
Title Mtb infection of human alveolar macrophages 
Description We are building a body of data on how different human alveolar macrophage subsets control Mtb infections. The database will link immunological and transcriptomic data with cell function. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? No  
Impact Other researcher will use the database to study Mtb infection of other human phagocytes. 
 
Description Are HIV-infected alveolar macrophages productive sites of viral persistence? 
Organisation Cornell University
Department College of Veterinary Medicine
Country United States 
Sector Academic/University 
PI Contribution Collection of human lung samples and performing experiments to determine if the lung is a reservoir of HV-1.
Collaborator Contribution They perform single cell RNAseq on samples from Malawi.
Impact Yes, this is a multi-disciplinary collaboration involving clinicians, immunologists, computational biologists and cell biologists.
Start Year 2020
 
Description Effect of HIV infection on the function of CD8+ polycytotoxic T lymphocytes in human tuberculosis 
Organisation University Hospital Ulm
Country Germany 
Sector Hospitals 
PI Contribution Collecting lung and blood samples and conducting experiments in Malawi for comparison with data from the German site
Collaborator Contribution Collection of blood samples and conducting experiments in Germany for comparison with data from the Malawi site
Impact Yes, the collaboration is multi-disciplinary involving immunologists, clinicians and microbiologists There are no outputs yet from this collaboration
Start Year 2021
 
Description Infection of human alveolar macrophages using Mtb reporter strains 
Organisation Cornell University
Department Department of Microbiology and Immunology
Country United States 
Sector Academic/University 
PI Contribution We recruit study participants, process human samples, infect human alveolar macrophages with fluorescent Mycobacterium tuberculosis (Mtb) reporter strains, prepare samples for RNAseq and acquire/analyse flow cytometry data.
Collaborator Contribution They donated the fluorescent Mtb strains for use in Malawi. They will perform RNAseq analysis of Mtb-infected and uninfected cells from Malawi and will help with data analysis.
Impact A) Technology development: Reporter Bead and Zymosan Assays for assessing phagocyte function; Fluorescent In Situ Hybridisation (FISH) assay for detecting HIV-infected cells B) Publications: 1. Peno C, Banda DH, Jambo N, Kankwatira AM, Malamba R, Allain TJ, Ferreira DM, Heyderman RS, Russell DG, Mwandumba HC, Jambo KC. Alveolar T-Helper 17 responses to Streptococcus pneumoniae are preserved in ART-untreated and treated HIV-infected Malawian adults. J Infect 2017; pii: S0163-4453(17)30343-2, doi: 10.1016/j.jinf.2017.10.013. 2. Gupta-Wright A, Tembo D, Jambo KC, Chimbayo E, Mvaya L, Caldwell S, Russell DG, Mwandumba HC. Functional analysis of phagocyte activity in whole blood from HIV/TB-infected individuals using a novel flow cytometry-based assay. Frontiers Immunol 2017; 8:1222. 3. Jambo KC, Tembo DL, Kamng'ona AW, Musicha P, Banda DH, Kankwatira AM, Malamba RD, Allain TJ, Heyderman RS, Russell DG, Mwandumba HC. HIV-associated disruption of lung cytokines networks is incompletely restored in asymptomatic HIV-infected Malawian adults on antiretroviral therapy. ERJ Open Res 2017; 3(4). pii: 00097-2017. Doi:10.1183/23120541. 4. Wilburn KM, Mwandumba HC, Jambo KC, Boliar S, Solouki S, Russell DG, Gludish DW. Heterogeneous loss of HIV transcription and proviral DNA from 8E5/LAV lymphoblastic leukemia cells revealed by RNA FISH:FLOW analyses. Retrovirology 2016 Aug 11; 13(1):55. doi 10.1186/s12977-016-0289-2. 5. Jambo KC, Banda DH, Afran L, Kankwatira AM, Malamba RD, Allain TJ, Gordon SB, Heyderman RS, Russell DG, Mwandumba HC. Asymptomatic HIV-infected individuals on antiretroviral therapy show impaired lung CD4+ T cell responses to mycobacteria. Am J Respir Crit Care Med 2014; 190:938-47. 6. Jambo KC, Banda DH, Kankwatira AM, Sukumar N, Allain TJ, Heyderman RS, Russell DG, Mwandumba HC. Small alveolar macrophages are infected preferentially by HIV and exhibit impaired phagocytic function. Mucosal Immunol 2014; 7:1116-26 7. Podinovskaia M, VanderVen BC, Yates RM, Glennie S, Fullerton D, Mwandumba HC, and Russell DG. Dynamic, Quantitative Assays of Phagosomal Function. Curr Protocols 2013; 102:14.34.1-14.34.14 8. Russell DG, Vanderven BC, Glennie S, Mwandumba H, Heyderman RS. The macrophage marches on its phagosome: dynamic assays of phagosome function. Nat Rev Immunol 2009; 9:594-600. 9. Mwandumba HC, Squire SB, White SA, Nyirenda MH, Kampondeni DS, Rhoades ER, Zijlstra EE, Molyneux ME, Russell DG. Association between sputum smear status and local immune responses at the site of disease in HIV-infected patients with pulmonary tuberculosis. Tuberculosis 2008; 88:58-63. 10. Mwandumba HC, Squire SB, White SA, Nyirenda MH, Zijlstra EE, Molyneux ME, Russell DG, Rhoades ER. Alveolar macrophages from HIV-infected patients with pulmonary tuberculosis retain the capacity to respond to stimulation by lipopolysaccharide. Microbes Infect 2007; 9:1053-1060. 11. Mwandumba HC, Russell DG, Nyirenda MH, Anderson J, White SA, Molyneux ME, Squire SB. Mycobacterium tuberculosis resides in non-acidified vacuoles in endocytically-competent alveolar macrophages from patients with tuberculosis and HIV infection. J Immunol 2004; 172:4592-8. 12. Russell DG, Mwandumba HC and Rhoades ER. Mycobacterium and the coat of many lipids. J Cell Biol. 2002; 158: 421-426.
Start Year 2019
 
Description Lung immune function in human TB infection and its perturbation by HIV-1 
Organisation Cornell University
Department College of Veterinary Medicine
Country United States 
Sector Academic/University 
PI Contribution We collect lung samples and infect them with Mycobacterium tuberculosis to assess the role of host immunity in controlling tuberculosis in the human lung.
Collaborator Contribution They infect mice with the same strains of Mycobacterium tuberculosis as we do in Malawi and assess their ability to control infection.
Impact Yes, this is a multi-disciplinary collaboration involving clinicians, immunologists, cell biologists, computational biologists and microbiologists.
Start Year 2020
 
Description Radio Programme, Malawi Broadcasting Corporation (MBC) 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Media (as a channel to the public)
Results and Impact Radio programme on Malawi's biggest national broadcaster to discuss how biomedical research, particularly my award, would benefit patients with tuberculosis and the scientific community.
Year(s) Of Engagement Activity 2017