Defining the role of src family kinases in cytomegalovirus reactivation

Lead Research Organisation: University College London
Department Name: Immunology and Molecular Pathology

Abstract

Human cytomegalovirus (HCMV), like all herpes viruses, can establish lifelong infections of the host. These latent infections can periodically re-enter the full lytic viral lifecycle (reactivate) to produce new progeny viruses throughout the lifetime of the host. Although this cycle of HCMV latency and reactivation in healthy individuals is rarely problematic and likely contributes to transmission, in patients with impaired immune responses (e.g. transplant recipients and AIDS patients) this often results in substantial morbidity contributing to poor outcomes post transplant, and without treatment, can lead to death. Current strategies rely on the use of anti-viral drugs with significant associated toxicities which act to inhibit viral replication - the major driver of HCMV disease. An alternative approach is to prevent viral reactivation from latency to limit the level of viral replication in the host.

Cells detect molecules (ligands) outside of the cell using cell surface receptors. These receptor:ligand interactions are then translated into biological responses within the cell. This is achieved via the activation of signalling pathways which translate the signal from outside the cell to inside the cell. We now know that HCMV utilises these fundamental signalling pathways to reactivate from latency. Inflammatory responses driven by interleukin-6 (IL-6) activate a key cellular pathway (ERK-MAPK) which in turn promotes viral gene expression in a specific cell type called dendritic cells (DCs). IL-6 can activate this pathway in many cell types and thus why it only promotes reactivation in DCs is not clear. We will test the hypothesis that additional pathways are activated in DCs when stimulated with IL-6 that act in concert with the IL-6/ERK pathway to generate the specific output required to reactivate HCMV due to the presence of key effector molecules in DCs.

Using an approach which allowed us to investigate if any cell type specific effects of IL-6 could be observed we identified that in cells that could support HCMV reactivation there was evidence of a correlative increased activation of a second specific signalling pathway - src family kinases (SFKs) - alongside ERK-MAPK. We then showed than chemical inhibition of this pathway was sufficient to prevent viral reactivation. In these studies, we will:
1) Define the specific contribution this second signalling pathway makes to HCMV reactivation
2) Define whether a specific member of the SFK family is critical for HCMV reactivation
3) Demonstrate that these two pathways are acting co-operatively to promote reactivation in DCs and provide a mechanistic basis for that interaction
4) Investigate a novel strategy to inhibit a component of this pathway that is requirement for HCMV reactivation

The outcomes of these studies will be a more detailed understanding of the process of HCMV reactivation in DCs, and a mechanistic basis for the cross-talk occurring between two central signalling pathways to promote reactivation. Furthermore, we propose that understanding how these two pathways interact may provide a novel strategy to inhibit HCMV reactivation via the targeting of a host-dependent response. This becomes attractive as targeting a host response potentially raises the barrier to the generation of resistant viruses which, clinically, can be a serious source of disease.

Technical Summary

Human cytomegalovirus (HCMV) reactivation is dependent on the activation of cellular signalling pathways. We have demonstrated that interleukin-6 (IL6) activation of ERK promotes reactivation in dendritic cells (DCs) but not progenitors. Thus why IL-6 activation of ERK only promotes reactivation in DCs is unclear. We hypothesised that the concomitant activation of additional pathways underpinned this DC-specific phenotype. A phospho-proteomic approach revealed that a src family kinase, haematopoietic cell kinase (HCK), was activated more efficiently by IL6 in a DC subtype that supported reactivation. Further evidence for a role was the observation that pharmacological inhibitors of src family kinase signalling inhibited reactivation. Preliminary data suggest that the role of SFK activity is to act in concert with ERK signalling to promote the post-translational modification of histones bound to a key viral promoter to ensure efficient viral gene expression.
In this study we will:
1) Use genetic approaches to delete HCK from DCs to demonstrate a role for HCK in HCMV reactivation focusing on the impact of this deletion of the induction of the viral gene expression
2) Test whether we can rescue HCMV reactivation in cells that do not normally support reactivation through introduction of a constitutively active version of HCK
3) Using Chromatin IP approaches, demonstrate that the role of HCK and SFK activity is to potentiate the chromatin remodelling initiated by ERK-MAPK signalling
4) Demonstrate that a peptide mimic of gp130 (the signalling arm of the IL-6 receptor) inhibits HCMV reactivation through the targeted blockade of IL-6 induced HCK activation

The study will improve our understanding of HCMV reactivation and, furthermore, enhance our understanding how crosstalk between pathways regulates eukaryotic gene expression using HCMV as a paradigm. Ultimately, it may lead to a strategy to target a host response to inhibit HCMV reactivation therapeutically.

Planned Impact

Human cytomegalovirus (HCMV) is an opportunistic viral pathogen that causes substantial morbidity in a number of patient groups. A key contributor to this is following the reactivation of lifelong latent infections in patients. The studies proposed herein seek to understand how HCMV is dependent on key host cell functions to reactivate.

An understanding of how HCMV is dependent will have immediate impact on researchers in this area of study through improvement of our understanding of the biology of this pathogen. Furthermore, there is broader impact because the questions being posed are fundamentally a question of how is eukaryotic gene expression regulated? Thus academics working in the field of gene regulation, chromatin biology and host cell signalling will be interested in the outcomes of this research.

Long term impact will be measured through the acquisition and application of new knowledge that will underpin future studies that could lead to more translational outcomes. The primary aim of the project proposed to increase our fundamental understanding of the biology of the virus and its interaction with the host. However, the implications are that the identification of less toxic niche interaction with the host cell could provide a novel strategy to target a host function to control viral replication. Ultimately, we will interact with clinical colleagues at the Royal Free Hospital to ensure that any opportunity for clinical translation is not missed. Successful development of new approaches will have major societal and economic impact. Reducing the effect of HCMV in transplant, where it represents an important cause of morbidity and graft failure in transplants, will improve patient outcomes and reduce the healthcare costs associated with treating the effects of HCMV infection in these patients.

Finally, another important aspect of our impact as researchers is the training of the next cadre of scientists. This work will be undertaken in a university laboratory that hosts and trains undergraduate to post-doctoral research students. It will be given that an aspect of the research proposed will be the training of the PDRA recruited and, in turn, providing the opportunity to train younger students seeking their first exposure to scientific research by immersing them in a research environment (e.g. undergraduate students).

Publications

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Griffiths P (2021) Pathogenesis of human cytomegalovirus in the immunocompromised host. in Nature reviews. Microbiology

 
Description Royal Free Charity Studentship
Amount £88,000 (GBP)
Organisation Royal Free Charity 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2020 
End 12/2023
 
Description Royal Free Charity Studentship
Amount £86,000 (GBP)
Organisation Royal Free Charity 
Sector Charity/Non Profit
Country United Kingdom
Start 11/2019 
End 10/2022
 
Description UCL Covid-19 Fund (Intramural)
Amount £35,000 (GBP)
Organisation University College London 
Sector Academic/University
Country United Kingdom
Start 07/2020 
End 12/2020
 
Description CovidAbs 
Organisation Health Services Laboratories
Country United Kingdom 
Sector Private 
PI Contribution We characterised sera from diagnostic samples held by HSL from Covid testing
Collaborator Contribution Worked with HSL to validate a commercial assay for rapid diagnosis of SARS-CoV-2 neutralising ab responses
Impact Publications (research square pre-print) and manuscript accepted at Journal of Infection Our work is leading to us feeding into NIHR convalescent sera trials
Start Year 2020
 
Description Development of novel vaccine platforms 
Organisation University College London
Department Department of Chemistry
Country United Kingdom 
Sector Academic/University 
PI Contribution We are working with colleagues in chemistry to develop novel nucleic acid based vaccines. The work was led by Matt Murray and Calum Forrest who were supported by MRC and Wellcome funding and builds on the Covid funding we received. Our role is to test the constructs for activity in cell based assays using our mol biol expertise with a view to moving to in vivo models
Collaborator Contribution Our partners make the constructs for us to test
Impact We have filed a priority application for the technology on which i am named as an inventor.
Start Year 2021
 
Description HCMVreactSEQ 
Organisation University of Glasgow
Department MRC - University of Glasgow Centre for Virus Research
Country United Kingdom 
Sector Academic/University 
PI Contribution We are generating the samples for analysis by RNAseq. We will then do the downstream biology after the analyses
Collaborator Contribution They are providing sequencing expertise - from sequencing through to bioinformatics analyses of the data
Impact No outcomes to date. Still early
Start Year 2019
 
Description HCMVsystemsbiology 
Organisation Queen Mary University of London
Country United Kingdom 
Sector Academic/University 
PI Contribution RNAseq data in HCMV infected cells
Collaborator Contribution QMUL are helping us with in silico analyses. Part of a building collabration with systems biology group interested in haematopoiesis and viral manipulation of the pathways involved
Impact BBSRC LiDO Phd Student project
Start Year 2019
 
Title Novel nucleic acid vaccines 
Description We are currently patenting the invention and then will seek licensing with our chemistry colleagues. 
Type Therapeutic Intervention - Vaccines
Current Stage Of Development Refinement. Non-clinical
Year Development Stage Completed 2022
Development Status Actively seeking support
Impact We have demonstrated that these novel vaccine formulations are functional and will proceed to IP protection and then testing in animals. This work was partially supported by MRC (through support of PDRA salary who performed the biological work), our Rosetrees support for our CMV vaccine studies and our Covid grant 
 
Description Nuffield Science Bursary 
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Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact The lab hosts students who have been awarded Nuffield Foundation Bursaries which allows A level students the chance to work in a lab over the summer who are from groups who would not usually be afforded this opportunity.
I act as a referee/mentor for subsequent UCAS applications
Year(s) Of Engagement Activity 2019,2020,2021,2022
URL https://www.nuffieldfoundation.org/funding
 
Description Nuffield Student 
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Geographic Reach National
Primary Audience Schools
Results and Impact Hosting Nuffield student (A level) for summer studies to carry out original research project. The scheme is designed to provide opportunities to individuals from disadvantaged backgrounds. The student has gone onto apply to top schools in the UK and US to to study medical sciences.
Year(s) Of Engagement Activity 2019,2020
URL https://www.nuffieldfoundation.org
 
Description STEM Outreach 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact This was a STEM event aimed at meeting with children from under-privileged backgrounds to talk about STEM careers and give them advice. Feedback was excellent and one interesting item of note was that the students appreciated a male STEM ambassador at the event!
Year(s) Of Engagement Activity 2022
URL https://www.ucl.ac.uk/ioe/departments-and-centres/centres/centre-education-and-criminal-justice/cope...
 
Description SchoolEngagement (London) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Talk and discussion with 6th form students at Westminister School about infectious dieases, herpes viruses and disease
Year(s) Of Engagement Activity 2020