NutriPROGRAM: Early-life Nutritional Programming of Metabolic Health through Epigenetic Pathways

Lead Research Organisation: University of Bristol
Department Name: Oral and Dental Science

Abstract

Pregnancy and infancy are critical periods for nutritional programming of metabolic health. Epigenetic changes seem to have a crucial role in pathways leading from early-life nutrition to metabolic health across the life course. NutriPROGRAM will study key maternal and infant nutrition-related exposures in relation to DNA methylation in mothers and offspring at different ages, and metabolic health across the life course. NutriPROGRAM will specifically focus on cause-and-effect relationships, reversibility of DNA methylation changes by nutrition, lifestyle, physical activity and microbiota, functional consequences of DNA methylation changes and translation into preventive or population-health strategies. Eventually, NutriPROGRAM will develop a sustainable, translational, international collaboration for studies on nutrition and epigenetics and their role in sustaining good health throughout the life course.

Technical Summary

Pregnancy and infancy are critical periods for nutritional programming of metabolic health. Epigenetic changes seem to have a crucial role in pathways leading from early-life nutrition to metabolic health across the life course. NutriPROGRAM will study key maternal and infant nutrition-related exposures in relation to DNA methylation in mothers and offspring at different ages, and metabolic health outcomes across the life course. It will involve: (1) integrating sets of early-life nutritional factors in mothers and infants; (2) observational and intervention studies across the life course on metabolic outcomes including longitudinal growth and fat development, advanced imaging for body fat, metabolomic profiles and clinical outcomes; (3) cause-and-effect relationships of DNA methylation in the associations of nutrition-related factors and metabolic outcomes across the life course, by advanced causal inference approaches; (4) modification of DNA methylation changes by nutrition, lifestyle, physical activity and microbiota; (5) functional consequences of differences in DNA methylation using RNA expression and tissue specific approaches; and (6) translation into preventive or population-health strategies. NutriPROGRAM will capitalize on rich, existing and complementary nutritional, metabolic and epigenetic datasets from observational and intervention studies in pregnancy, childhood and adulthood, together covering the full life course. It will use knowledge and data infrastructures from different collaborative consortia including the Horizon2020 DynaHEALTH and LifeCycle Projects, the ERA-HDHL ALPHABET project, and the Pregnancy and Childhood Epigenetics (PACE) Consortium. Eventually, NutriPROGRAM will develop a sustainable, translational, international collaboration for current and future studies on nutrition and epigenetics and their role in sustaining good health throughout the lifecourse.

Planned Impact

NutriPROGRAM will create a set of harmonised and integrated nutrition-related exposure indices that can serve as important novel and improved tools for scientists studying the relationships between nutrition and health both within and outside of NutriPROGRAM.

NutriPROGRAM will lead to the identification of novel DNA methylation loci with functional roles in the pathways underlying the relation of early-life nutrition and metabolic health, improving the knowledge base for future research and development activities.

NutriPROGRAM will lead to a better understanding of causality and modification of DNA methylation in the pathways leading from early-life nutrition to metabolic health. This will be a starting point for evidence-based preventive strategies and new nutrition-related interventions to reduce the worldwide health-related, economic and societal burden of obesity, dyslipidemia and type 2 diabetes in future generations.

NutriPROGRAM will develop a method for prioritisation of DNA methylation markers for functional follow-up that will be broadly applicable for the wider research community involved in DNA methylation research.

NutriPROGRAM will form a sustainable, translational international network on early-life nutrition, epigenetics and long term metabolic outcomes that will lay the foundation of further research in this area for many years to come.

Effective exploitation and dissemination of research results is an important aspect of the work performed in NutriPROGRAM and will be a focus of attention from the beginning of this project onwards. WP6 will be responsible for the management of dissemination and exploitation. Partners in the consortium will be encouraged to participate in active dissemination strategies, which will include:

- Publishing scientific articles: NutriPROGRAM will produce scientific manuscripts which will be submitted for publication in peer-reviewed journals.

- Presenting work at national and international scientific conferences: Consortium members will present the work performed in the consortium at relevant scientific conferences and will engage in discussions with fellow scientists and other interested conference participants.

- Training activities: Consortium partners will be actively involved in the training of early career researchers, transferring knowledge and skills to contribute to building a strong foundation for their research careers. In addition, all consortium partners are involved in teaching activities in their own and other institutions. These include lectures, seminars and workshops. Relevant results from the work performed in the consortium will be incorporated in these teaching activities.

- Communicating with the general public: NutriPROGRAM will disseminate scientifically credible findings, with appropriate interpretations and explanations, to the general public. Various ways of communication may be used, including traditional media, (institutional) websites and social media.

- Communicating with stakeholders: NutriPROGRAM will effectively translate relevant scientific findings to various stakeholders, including policy makers, healthcare professionals such as obstetricians, midwives, paediatricians and general practitioners, industry and patient organisations.

Publications

10 25 50
 
Description Co-director of the MSc in Reproduction and Development
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gemma Sharp is the co-director of the University of Bristol's highly successful MSc in Reproduction and Development. Students include practicing midwifes, junior doctors, researchers and embryologists. The course equips them with the necessary skills to improve their practice and critically appraise, design and conduct relevant research.
URL http://www.bristol.ac.uk/medical-school/study/postgraduate/reproduction-development/
 
Description Epigenetic Epidemiology short course
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact I developed and delivered a one week course on epigenetic epidemiology in 2019 and again in 2020. Participants ranged from masters to professorial level. The course was very well-received and participants reported feeling confident that they had achieved the intended learning outcomes. Several are now conducting their own genetic/epigenetic studies.
URL https://www.bristol.ac.uk/medical-school/study/short-courses/epigenetic-epidemiology/
 
Description Genetic and Epigenetic Epidemiology (EEPE) course
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gemma Sharp and Rebecca Richmond (along with David Evans and Gib Hemani) co-developed and delivered a one week course on genetic and epigenetic epidemiology in Florence. Participants ranged from masters to professorial level. The course was very well-received and participants reported feeling confident that they had achieved the intended learning outcomes. Several are now conducting their own genetic/epigenetic studies.
URL https://eepe.org/courses/
 
Description Lectures at LSHTM
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gemma Sharp was invited to give two lectures to masters students at the London School of Hygiene and Tropical Medicine: "Minimising bias and confounding in observational epidemiology" and "Mendelian Randomization". These will take place on March 17th 2020. The lectures are intended to introduce students to these important areas and methods in observational epidemiology and equip them with the skills to critically appraise, design and conduct high quality epidemiological research.
 
Description MSc in Epidemiology - unit lead of 'Molecular Epidemiology for Noncommunicable Disease'
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gemma Sharp co-developed from scratch and now co-delivers a unit on Molecular Epidemiology as part of the University of Bristol's MSc in Epidemiology. The unit introduces masters students to molecular (genetic and epigenetic) epidemiology and equips them with the skills to critically appraise, design and conduct high quality epidemiological research.
URL https://www.bris.ac.uk/unit-programme-catalogue/UnitDetails.jsa;jsessionid=2BBAB6E8979AB5B406936FBF3...
 
Description Workshop on harmonisation of data in multicohort studies
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gemma Sharp gave a talk as part of a half-day course on data harmonization in observational studies at the DOHaD 2019 world congress in Melbourne. Participants ranged from masters to professorial level. The course was very well-received and participants reported feeling confident that they had achieved the intended learning outcomes. Several are now conducting their own multi cohort studies.
URL http://www.cvent.com/events/2019-dohad-international/custom-132-828d23c3caf043c0ae6449de8d7bfbc3.asp...
 
Description Workshop on triangulation
Geographic Reach Multiple continents/international 
Policy Influence Type Influenced training of practitioners or researchers
Impact Gemma Sharp co-developed and delivered a half-day course on triangulation in observational studies at the DOHaD 2019 world congress in Melbourne. Participants ranged from masters to professorial level. The course was very well-received and participants reported feeling confident that they had achieved the intended learning outcomes. Several are now conducting their own triangulation studies.
URL http://www.cvent.com/events/2019-dohad-international/custom-132-828d23c3caf043c0ae6449de8d7bfbc3.asp...
 
Description GW4 Development Award
Amount £5,000 (GBP)
Organisation GW4 
Sector Academic/University
Country United Kingdom
Start 12/2022 
End 12/2023
 
Description GW4 Generator Award
Amount £14,800 (GBP)
Organisation GW4 
Sector Academic/University
Country United Kingdom
Start 06/2021 
End 11/2021
 
Description Improving mental health outcomes in children born with an orofacial cleft: Identifying children at most risk to target clinical provision
Amount £608,551 (GBP)
Funding ID MR/W020297/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 09/2022 
End 08/2025
 
Description MGLE PhD studentship to Gemma Sawyer: exploration of bidirectional relationships between menstrual and social wellbeing
Amount £130,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2021 
End 10/2025
 
Description Wellcome Trust PhD in Molecular, Genetic and Lifecourse Epidemiology - studentship to Florence Martin
Amount £130,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2020 
End 10/2024
 
Description Wellcome Trust PhD in Molecular, Genetic and Lifecourse Epidemiology - studentship to Peiyuan Huang
Amount £130,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2020 
End 10/2024
 
Title Paternal BMI meta-EWAS results 
Description This project explores associations between paternal body mass index around the time of conception and offspring DNA methylation in cord blood at birth and peripheral whole blood at childhood. Independent cohorts carried out epigenome-wise association studies (EWAS) according to a pre-specified analysis plan. The summary statistics from these EWAS were then meta-analysed. This dataset provides the full summary statistics for the project. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact A paper describing this study has been published and the data has been uploaded to the EWAS catalog for further use and dissemination by other groups. 
URL https://dataverse.harvard.edu/dataverse/pace_paternal_bmi_methylation
 
Description 4M consortium 
Organisation Cardiff University
Country United Kingdom 
Sector Academic/University 
PI Contribution Gemma Sharp established the Menarche, Menstruation, Menopause and Mental health (4M) consortium using funding from the GW4 Alliance (generator award: £14800). The consortium brings together researchers from different disciplines and institutions, with a shared interest in the intersection of menstrual and mental health. This includes researchers interested in using molecular epidemiological approaches to conduct research in this area.
Collaborator Contribution The 4M consortium includes partners from Bath, Cardiff and Exeter University, as well as external stakeholders from charities, patient groups, the NHS, government departments, and the United Nations Population Fund (UNFPA).
Impact We have run several workshops, including a three day in-person grant writing retreat. We have developed and submitted four grant applications for further funding.
Start Year 2021
 
Description 4M consortium 
Organisation GW4
Country United Kingdom 
Sector Academic/University 
PI Contribution Gemma Sharp established the Menarche, Menstruation, Menopause and Mental health (4M) consortium using funding from the GW4 Alliance (generator award: £14800). The consortium brings together researchers from different disciplines and institutions, with a shared interest in the intersection of menstrual and mental health. This includes researchers interested in using molecular epidemiological approaches to conduct research in this area.
Collaborator Contribution The 4M consortium includes partners from Bath, Cardiff and Exeter University, as well as external stakeholders from charities, patient groups, the NHS, government departments, and the United Nations Population Fund (UNFPA).
Impact We have run several workshops, including a three day in-person grant writing retreat. We have developed and submitted four grant applications for further funding.
Start Year 2021
 
Description 4M consortium 
Organisation University of Bath
Country United Kingdom 
Sector Academic/University 
PI Contribution Gemma Sharp established the Menarche, Menstruation, Menopause and Mental health (4M) consortium using funding from the GW4 Alliance (generator award: £14800). The consortium brings together researchers from different disciplines and institutions, with a shared interest in the intersection of menstrual and mental health. This includes researchers interested in using molecular epidemiological approaches to conduct research in this area.
Collaborator Contribution The 4M consortium includes partners from Bath, Cardiff and Exeter University, as well as external stakeholders from charities, patient groups, the NHS, government departments, and the United Nations Population Fund (UNFPA).
Impact We have run several workshops, including a three day in-person grant writing retreat. We have developed and submitted four grant applications for further funding.
Start Year 2021
 
Description 4M consortium 
Organisation University of Exeter
Country United Kingdom 
Sector Academic/University 
PI Contribution Gemma Sharp established the Menarche, Menstruation, Menopause and Mental health (4M) consortium using funding from the GW4 Alliance (generator award: £14800). The consortium brings together researchers from different disciplines and institutions, with a shared interest in the intersection of menstrual and mental health. This includes researchers interested in using molecular epidemiological approaches to conduct research in this area.
Collaborator Contribution The 4M consortium includes partners from Bath, Cardiff and Exeter University, as well as external stakeholders from charities, patient groups, the NHS, government departments, and the United Nations Population Fund (UNFPA).
Impact We have run several workshops, including a three day in-person grant writing retreat. We have developed and submitted four grant applications for further funding.
Start Year 2021
 
Description NutriPROGRAM consortium collaboration 
Organisation Barcelona Institute for Global Health
Country Spain 
Sector Multiple 
PI Contribution We co-designed and lead work package 4 in the Nutriprogram consortium project. We also lead or contribute to several other activities in other work packages.
Collaborator Contribution Other partners lead other work packages and contribute data and results to the work package we lead (WP4).
Impact A collaboration agreement (including DTA) has been signed by all contributing members. The collaboration is multi-disciplinary, involving epidemiologists, geneticists, nutritionists, biologists and clinicians.
Start Year 2019
 
Description NutriPROGRAM consortium collaboration 
Organisation Erasmus MC
Country Netherlands 
Sector Hospitals 
PI Contribution We co-designed and lead work package 4 in the Nutriprogram consortium project. We also lead or contribute to several other activities in other work packages.
Collaborator Contribution Other partners lead other work packages and contribute data and results to the work package we lead (WP4).
Impact A collaboration agreement (including DTA) has been signed by all contributing members. The collaboration is multi-disciplinary, involving epidemiologists, geneticists, nutritionists, biologists and clinicians.
Start Year 2019
 
Description NutriPROGRAM consortium collaboration 
Organisation Ludwig Maximilian University of Munich (LMU Munich)
Country Germany 
Sector Academic/University 
PI Contribution We co-designed and lead work package 4 in the Nutriprogram consortium project. We also lead or contribute to several other activities in other work packages.
Collaborator Contribution Other partners lead other work packages and contribute data and results to the work package we lead (WP4).
Impact A collaboration agreement (including DTA) has been signed by all contributing members. The collaboration is multi-disciplinary, involving epidemiologists, geneticists, nutritionists, biologists and clinicians.
Start Year 2019
 
Description NutriPROGRAM consortium collaboration 
Organisation University of British Columbia
Country Canada 
Sector Academic/University 
PI Contribution We co-designed and lead work package 4 in the Nutriprogram consortium project. We also lead or contribute to several other activities in other work packages.
Collaborator Contribution Other partners lead other work packages and contribute data and results to the work package we lead (WP4).
Impact A collaboration agreement (including DTA) has been signed by all contributing members. The collaboration is multi-disciplinary, involving epidemiologists, geneticists, nutritionists, biologists and clinicians.
Start Year 2019
 
Description NutriPROGRAM consortium collaboration 
Organisation Wageningen University & Research
Country Netherlands 
Sector Academic/University 
PI Contribution We co-designed and lead work package 4 in the Nutriprogram consortium project. We also lead or contribute to several other activities in other work packages.
Collaborator Contribution Other partners lead other work packages and contribute data and results to the work package we lead (WP4).
Impact A collaboration agreement (including DTA) has been signed by all contributing members. The collaboration is multi-disciplinary, involving epidemiologists, geneticists, nutritionists, biologists and clinicians.
Start Year 2019
 
Description Pregnancy and Childhood Epigenetics (PACE) consortium 
Organisation National Institute of Environmental Health Sciences
Department Pregnancy And Childhood Epigenetics Consortium
Country United States 
Sector Public 
PI Contribution I gave an invited talk at the annual PACE meeting in Rotterdam in August 2019. In the talk, I explained how the PACE consortium and its partners could use a technique (Mendelian randomisation) to explore causality in epigenetic epidemiological studies. I am also leading a PACE consortium paper about paternal BMI, which will be submitted soon. Prior to any current awards, I have led and contributed to multiple PACE projects.
Collaborator Contribution The PACE consortium facilitates my research on prenatal influences on offspring health. PACE is facilitating NutriPROGRAM projects on breastfeeding, maternal nutrition and offspring fat mass index and lipids.
Impact Several papers (before any current awards) and conference presentations.
Start Year 2014
 
Description Collaboration with the Institute for Research In Schools 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact I worked with IRIS (the institute for research in schools) to inform on the design of lesson plans around COVID-19 epidemiological research. One of the lessons was focussed on collaboration in epidemiology and the different career paths in the field.
Year(s) Of Engagement Activity 2020,2021
 
Description Creative Reactions 2019 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact I took part in Creative Reactions, an initiative that pairs scientists with artists to create artwork based on their academic research. I was paired with Olga Trevisan, an artist based in Venice, Italy. Based on some of my research around the Developmental Origins of Health and Disease, Olga created a piece called Beyond Question, which comments on the complexities of scientific data collection, bias and interpretation. Interesting conversations with people viewing the artwork revealed that some people's opinions (about the importance of the maternal contribution to offspring health, relative to paternal and wider societal influences) were challenged and changed. The artwork was displayed at two exhibitions at different sites in Bristol, with two separate launch events attended by the local media.
Year(s) Of Engagement Activity 2019
URL https://epoch.blogs.bristol.ac.uk/2019/12/21/beyond-question-a-collaboration-between-epoch-and-artis...
 
Description NutriPROGRAM Twitter 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact We have a NutriPROGRAM Twitter account with nearly 50 followers.
Year(s) Of Engagement Activity 2019
URL https://twitter.com/nutriprogram
 
Description Pint of Science talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Around 50 people attended a public talk in a pub in Bristol as part of the Pint of Science initiative. It sparked questions and discussion afterwards, and several attendees asked how they could be involved in future research.
Year(s) Of Engagement Activity 2022