Big data analysis of electronic hospital records: inpatient trajectories and pharmacological exposures associated with mortality in older adults.

Lead Research Organisation: University of Cambridge
Department Name: Medicine

Abstract

Admissions to National Health Service (NHS) hospitals in England have increased by 28% over the last decade and nearly half of all adults admitted are >=65 years old. Some older adults age robustly but others develop frailty, a condition characterised by reduced ability to withstand stressors such as illness. In addition, approximately a third of adult inpatients have one or more chronic health conditions, and many patients are prescribed multiple long term medications, so called 'polypharmacy'. We aim to understand how older adults use emergency hospital services and journey through the hospital from admission to discharge. We will also explore factors, particularly related to prescription medications, associated with poor hospital outcomes such as inpatient death. The World Health Organisation declared 'Medication without harm' its 3rd global patient safety challenge in 2017 and a report commissioned by the Department of Health Policy Research Programme estimated medication errors cost the NHS £98.5 million per year. Whilst medication related harm is widely recognised, more information is needed about which drugs confer the highest risk in which patients to inform safer prescribing practices.

We will use data from 80 000 inpatient episodes of older adults (>/=65 years old) admitted as an emergency to one tertiary NHS hospital (Addenbrooke's Hospital, Cambridge) over four years. Data is available for large scale retrospective analysis after an electronic patient record system was introduced in 2014. Information describing all aspects of admission from patient characteristics such as age group to information pertaining to bedside observations, prescription medications and blood tests are available. These data will have many repeated measurements over the admission duration, for example blood pressure measurements taken several times each day, leading to a very large and complex dataset. Therefore, anonymised patient records will be transferred to the European Bioinformatics Institute (EBI; Wellcome Genome Campus, Hinxton, Cambridge). EBI is a leading research institution focused on developing cutting-edge technologies to process and manage 'big' data.

We will employ machine learning (ML), a type of artificial intelligence capable of visualising patterns within complex data, to explore the thousands of patient examples in our dataset. We will firstly define how many different types of hospital admission describe the majority of admissions in older adults and characterise these inpatient trajectories. For example, admission episodes may be characterised by their length (short versus prolonged) or hospital operational factors such as number of ward moves. Secondly, we will use ML to study how different prescribed medications, or combinations of medications, represent a pattern that is consistently associated with inpatient death. We can use known associations, such as the use of blood thinning medications and higher likelihood of death from bleeding, to educate the ML process. ML can then identify other prescribing patterns associated with inpatient death and explore whether certain patient characteristics or types of admission make patients more vulnerable. This will build a comprehensive picture of patient, treatment and hospital factors that impact on the eventual hospital outcome. Inpatient death is our primary outcome but other outcomes such as new admission to a care home following discharge can be considered. Finally, ML can simulate how the hospital outcome might change if a hypothetical alternative treatment plan was employed. For example, medications can be substituted with an alternative treatment to see how this would change the likelihood of death occurring.

This research will describe use of acute hospital services by older adults and identify potentially inappropriate medications for further study. The Northeast-Newcastle & North Tyneside research ethics service committee approved the study.

Technical Summary

Increasing numbers of older adults require hospital admission. Some older adults age well but others develop frailty, characterised by reduced ability to withstand stressors, and many experience co-morbidity and polypharmacy. We aim to understand how older adults use emergency hospital services by characterising the different inpatient trajectories that describe the majority of admissions. We will also explore if prescribed medications are associated with inpatient mortality to identify potentially inappropriate medications (PIMs).
Data from 80 000 inpatient episodes in older adults (>/=65 years old) admitted as an emergency to Addenbrooke's Hospital (Cambridge) over four years are available for large scale retrospective analysis after the introduction of an electronic patient record. Information describing all aspects of admission from patient characteristics to bedside observations, prescribed medications and laboratory tests are available. These data will have many repeated measurements resulting in a large, complex longitudinal dataset and physicians at Addenbrooke's have collaborated with the European Bioinformatics Institute (Wellcome Genome Campus, Hinxton, Cambridge) to combine clinical and technical expertise.
After anonymization, machine learning (ML) will be used to define the different types of inpatient trajectory. For example, admission episodes may be characterised by their length of stay or operational factors, e.g., number of ward moves. Secondly, ML will model risk factors associated with inpatient mortality with the aim of identifying PIMs and evaluating interactions between PIMs and patient factors or the type of admission in this heterogenous group. Other outcomes such as new institutionalisation will be considered and we will use ML to simulate how the patient outcome might change if a hypothetical alternative treatment plan had been employed.
The Northeast-Newcastle & North Tyneside research ethics service committee approved the study.

Planned Impact

We will use electronic hospital data to define the inpatient trajectories that describe the majority of emergency admissions in older adults presenting to a large hospital and identify factors, particularly prescribed medications, associated with negative hospital outcomes. This information will interest frontline National Health Service (NHS) staff, NHS leaders, commissioners and policy makers. For example, the Cambridgeshire and Peterborough Sustainability and Transformation Partnership (STP) has stated five key priorities required to deliver an NHS 'fit for the future'. These include 'Providing safe and effective hospital care when it is needed, including responsive urgent and expert emergency care...' and 'Using technology to modernise health'. Our study will demonstrate the value of technology and, through utilisation of electronic hospital records, will contribute knowledge relevant to the provision of effective emergency care. Current hospital services have evolved from systems designed to diagnose and treat patients presenting with single conditions. Increasing numbers of older adults now present with two or more long term health conditions, polyphamacy and/ or frailty. Characterising the inpatient journeys of this complex patient group will provide insights into how they use emergency hospital care. This will highlight any inefficiencies of current services and inform decisions relating to the development and commissioning of future urgent care.
This study will also generate new hypotheses regarding potentially inappropriate medications (PIMs). PIMs are medications more likely to be associated with harm than clinical benefit and The National Medicines Safety Programme, part of NHS Improvement, has highlighted the need for more information about high risk drugs and vulnerable patient groups. This project will contribute knowledge to both of these domains and will highlight areas for future research. This information will also be of interest to the pharmaceutical industry and will add to the evidence informing safe prescribing and industry led research into medicines safety.
With respect to academia this project will develop the methodology and governance structure for extraction and analysis at scale of electronic inpatient data, collected during routine clinical care. This is a new data resource and this study will define the ethical considerations and processes to address them, such as anonymization protocols and secure data transfer from the NHS to research institutions. This study will also deliver important contributions to machine learning (ML), developing ML methods to analyse data collected at multiple time points and building on current methods which have used healthcare data collected only once. Finally, this study will add to the evidence base describing how routinely collected clinical data can be used to predict health outcomes and it will generate hypotheses regarding care pathways in older adults and PIMs, that can be tested by other service evaluations and research studies.
The impact of this study will be realised through focus groups with patients and the public and direct liaison with the STP, local hospital and clinical commissioning group managers. Study findings will be presented and published in relevant scientific meetings and journals and disseminated through research networks. This activity will occur over the three years of the grant and will continue to inform future research for years after its conclusion.
This proposal will benefit academia by providing a governance structure and developing tools that enable secure data sharing at scale, whilst protecting individual privacy, and will provide methodologies for data analysis applicable across the NHS. It will deliver insights into the use of emergency hospital services by older patients and our understanding of PIMs, an important aspect of patient safety prioritised by NHS Improvement, important to patients and of value to Pharma.

Publications

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Keevil VL (2020) Frailty Assessment in Clinical Practice: Opportunity in the Midst of a Pandemic. in Geriatrics (Basel, Switzerland)

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Mackett AJ (2020) COVID-19 and Gastrointestinal Symptoms-A Case Report. in Geriatrics (Basel, Switzerland)

 
Description European Molecular Biology Laboratory-European Bioinformatics Institute 
Organisation EMBL European Bioinformatics Institute (EMBL - EBI)
Country United Kingdom 
Sector Academic/University 
PI Contribution This is a collaboration between clinicians and technical experts with experience in big data analysis using machine learning techniques. I bring knowledge of the clinical data recorded as part of routine healthcare carried out in hospitals, relevant clinical research questions that could be asked of this data and the clinical interpretation of subsequent analytical outputs.
Collaborator Contribution Expert analysis of data using machine learning techniques
Impact We have transferred the routinely collected healthcare data pertaining to 145 000 admission episodes of older adults at CUH to EMBL-EBI and have begun data analysis
Start Year 2019
 
Description Cardiovascular eHospital Research Database Patient and Public Involvement and Engagement workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact A public engagement workshop to explain the purposes of creating a de-identified dataset using data extracted from hospital electronic health records, for cardiovascular disease research (as an exemplar project- databases for other diseases/ conditions could be created adopting similar principles). We sought the opinions of a public panel regarding the strengths of the proposals, any concerns they may have or suggestions for improvement.
Year(s) Of Engagement Activity 2021
 
Description GeriData- A National Ageing Data Research Collaborative 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact This is an ongoing collaboration of academic geriatricians across the UK focused on harnessing routinely collected healthcare information and other 'big data' for research (pertaining to older people's health). This group promotes knowledge sharing e.g., how to implement electronic health records in different clinical settings and maximise their potential for research, and networking.
Year(s) Of Engagement Activity 2021
 
Description Patient and public involvement focus group- artificial intelligence and machine learning 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Patients, carers and/or patient groups
Results and Impact Focus group meeting with a small number of patients and carers who were part of a patient and public involvement panel. The aim of the workshop was to improve the communication of research outputs from studies using machine learning techniques, a type of artificial intelligence, to lay audiences. In particular, we discussed the preliminary results from our study. This explores hidden relationships within data retrieved from one, large hospital's Electronic Health Record system to help understand human biology. The participants found the preliminary study results very interesting but some technical terms were confusing. For example, the group all agreed the term 'machine learning' was not helpful and they preferred to simply refer to the analytical techniques as 'artificial intelligence'. This work will help future communication and engagement activities.
Year(s) Of Engagement Activity 2020
 
Description Patient and public involvement focus group- use of routinely collected healthcare data for research 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Patients, carers and/or patient groups
Results and Impact I discussed the research potential of anonymised routinely collected healthcare data, available from electronic hospital records, with 8 members of a public and patient involvement group. This helped me to understand patient's concerns and expectations regarding the use of this data in research studies, which is done without explicit patient consent. Overall, within this group, patients were positive about the use of routinely collected healthcare data for scientific research and public health benefit. However, they were clear that use of this data must be transparent, so that it is clear to the public how it is being used, and done in a safe and secure way to prioritise protection of patient confidentiality.
Year(s) Of Engagement Activity 2020
 
Description Symposium at British Geriatrics Society Conference: Big Data Adapting Hospital Electronic Health Records to Improve the Care of Older People 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact This symposium at the British Geriatrics Society National conference was an opportunity to discuss the advantages and challenges of implementing Electronic Health Records in NHS hospitals and present work related to harnessing 'big data' from Electronic Health Records for service evaluation and research. An expert panel discussion and Q&A on the topic of 'Big Data' in Geriatric Medicine sparked a lively debate and engaged clinicians, allied health professionals, nurses and researchers in the audience to participate.
Year(s) Of Engagement Activity 2021
 
Description Turing workshop- Ageing and Artificial Intelligence: Patient and Public Perspective 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact Participation in/ support of PPIE workshops funded by the Alan Turing Institute, led by Dr Oliver Todd (Leeds). The aims were to explore patient and public understanding of AI and opportunities for AI in ageing/ healthcare for older adults. These workshops also explored healthcare staff and AI expert views.
Year(s) Of Engagement Activity 2022
 
Description Ward round experience 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Other audiences
Results and Impact I encourage professional colleagues in clinical informatics and other Research and Development departments of my organisation (Cambridge University Hospitals NHS Trust) to shadow me on a ward round or other clinical activity. This encourages a sense of teamwork across the organisation and helps the professional staff working in these departments understand the reason behind the translational research activity they support--- i.e., to improve patient care and provide the evidence to know how best to do this!
Year(s) Of Engagement Activity 2022