Understanding phenotype and mechanisms of spontaneous preterm birth in sub-Saharan Africa (PRECISE-SPTB)

Lead Research Organisation: King's College London
Department Name: Women's Health

Abstract

Preterm birth, birth before 37 weeks of pregnancy, is a major cause of infant death and illness in sub-Saharan Africa. Over 80% of preterm births globally have been estimated to occur in sub-Saharan African (sSA) and Asian countries, the majority being due to women going into preterm labour spontaneously or their membranes (waters) rupture early (classified together as spontaneous preterm birth, SPTB).

Despite knowledge of the global impact of SPTB, most of the research into this often devastating pregnancy outcome has focussed on pregnant women in high income countries such as the UK and USA. Much less in known about SPTB in women from low income countries. However, the underlying biological causes of SPTB are complex and heavily influenced by environment, nutrition, infection and other risk factors that pregnant women are exposed to. Region specific research is essential if we are to improve maternal and newborn healthcare in countries where the burden of preterm birth is highest.

Addressing this need, we plan to study to clinical and social risk factors (from 5000 women recruited to the PRECISE Network pregnancy cohort, https://precisenetwork.org/) combined with biological markers of SPTB in the female reproductive tract, blood and placental tissue in women from Kenya, The Gambia and Mozambique. We will integrate these data to enhance our biological understanding of SPTB as well as identifying novel biomarkers relevant to sub-Saharan African populations to predict risk of SPTB.

We will also create sustainable teams of SPTB researchers by training five new African scientists and supporting their supervisor as research leaders. We will, with colleagues in The Gambia, establish a bioinformatics training programme and a laboratory science network for our researchers in Sub Saharan Africa and the UK.

We anticipate that this work will impact future strategies for clinical risk management, prevention and treatment that specifically addresses the needs of women in sub-Saharan Africa, as well as having potential relevance to SPTB globally.

Technical Summary

Preterm birth is a major contributor to neonatal mortality and morbidity in sub-Saharan Africa. Recent estimates indicate births in Asian and sub-Saharan countries accounted for approximately 80% of preterm births globally, a significant proportion of which will be caused by spontaneous onset of labour and/or preterm premature rupture of membranes (classified together as spontaneous preterm birth, SPTB). Despite knowledge of the global impact of SPTB, a skewed emphasis of SPTB research in high income countries means less is known of SPTB amongst women from low income countries. The aetiology of SPTB is complex and heavily influenced by environment, infection nutrition and other co-exposures; it follows that region-specific research into epidemiology and other major contextual and biological drivers of SPTB is an essential pre-requisite to improved maternal and newborn healthcare where the burden is greatest.

This project will utilize the PRECISE Network bio-repository and database (a UKRI Global Challenges Research Funded project) which is storing well curated samples from approximately 10,000 pregnant women recruited in rural and urban sites in Kenya, The Gambia and Mozambique.

Using a combination of clinical phenotyping (n=5000 women) and a multi-omics approach (n=600 women), we will integrate clinical factors with cervicovaginal, plasma and placental biomarkers to characterise SPTB sub-groups. Mechanistic insights into the drivers for SPTB in sub Saharan populations has potential to identify novel biomarkers for predicting risk of SPTB as well as enabling enable comparisons with our understanding of preterm birth in other countries. This work will impact future strategies for clinical risk management, prevention and treatment that specifically addresses the needs of women in sub-Saharan Africa.

Planned Impact

The ultimate aim of this project is, though robust science, to define the clinical, biological and contextual factors that influence risk of spontaneous preterm birth (SPTB) in women from sub-Saharan Africa. In addition to the immediate research and training beneficiaries, and the national and global academic sector (as detailed in the 'Pathways to Impact' statement), the most important and wider group of beneficiaries will be women and children living in sub Saharan Africa and other low-middle income countries. They, through improved antenatal care and management, will lead healthier and more fulfilling lives.

Impact is likely to come initially from the epidemiological identification of region-specific risk factors of SPTB that are modifiable through education and healthcare intervention. This impact will be mediated through local and national policy makers and multilaterals and NGOs, who will also be beneficiaries. The greater PRECISE Network, within which this project is linked, is already actively engaged with these beneficiaries in the three countries participating in the PRECISE NETWORK pregnancy cohort (The Gambia, Kenya and Mozambique). The work themes in the PRECISE NETWORK are already liaising with local health care providers, and through the 'Access and Maternity health system delivery' theme with the women themselves. This is informing our understanding of the many practical issues of health care delivery and how education and how new biomarker tests could interdigitate with existing pathways of care.

This impact will be increased as the scientific discoveries become apparent from our integrative multiomics approach. We anticipate identifying biomarkers that have potential for translation into point of care tests; this could have impact both on health and socioeconomic rewards for the Institutions and commercial sector involved in developing the technology. Investment in a spin-out company (or through partnership with known ethical commercial entities in the diagnostic industry) would open doors for expansion into markets in sub Saharan Africa and improve maternity healthcare for those who need it the most.

PRECISE-SPTB project is ODA compliant (see ODA statement for details).

Publications

10 25 50
 
Description PRECISE NETWORK 
Organisation Aga Khan University
Country Kenya 
Sector Academic/University 
PI Contribution This project is linked to the PRECISE Network and as such our specific PRECISE-SPTB team works with the larger collaborative. We have introduced new bio-informatics training resources (via our partners based at the NIHR BRC GSTT KC) to the PRECISE network and set up a PRECISE-PTB Online research talk programme. Both are open to researchers based in our collaborators sites (MRC Gambi; Aga Khan University, Kenya and partners in Mozambique) even if they are not directly part of our project or PRECISE.
Collaborator Contribution We have identified researchers based at our partner sites to take part in future bioinformatics training, and they have attended and will participate in our research talks.
Impact Ongoing
Start Year 2021
 
Description PRECISE NETWORK 
Organisation Medical Research Council (MRC)
Department MRC Unit, The Gambia
Country Gambia 
Sector Public 
PI Contribution This project is linked to the PRECISE Network and as such our specific PRECISE-SPTB team works with the larger collaborative. We have introduced new bio-informatics training resources (via our partners based at the NIHR BRC GSTT KC) to the PRECISE network and set up a PRECISE-PTB Online research talk programme. Both are open to researchers based in our collaborators sites (MRC Gambi; Aga Khan University, Kenya and partners in Mozambique) even if they are not directly part of our project or PRECISE.
Collaborator Contribution We have identified researchers based at our partner sites to take part in future bioinformatics training, and they have attended and will participate in our research talks.
Impact Ongoing
Start Year 2021
 
Description PRECISE NETWORK 
Organisation National Institute for Health Research
Department NIHR Biomedical Research Centre (Guy's, St Thomas' and KCL)
Country United Kingdom 
Sector Hospitals 
PI Contribution This project is linked to the PRECISE Network and as such our specific PRECISE-SPTB team works with the larger collaborative. We have introduced new bio-informatics training resources (via our partners based at the NIHR BRC GSTT KC) to the PRECISE network and set up a PRECISE-PTB Online research talk programme. Both are open to researchers based in our collaborators sites (MRC Gambi; Aga Khan University, Kenya and partners in Mozambique) even if they are not directly part of our project or PRECISE.
Collaborator Contribution We have identified researchers based at our partner sites to take part in future bioinformatics training, and they have attended and will participate in our research talks.
Impact Ongoing
Start Year 2021
 
Description Bioinformatics workshop - introduction to git 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The course was aimed at researchers across our partner institutes for the PRECISE-SPTB project. Over 2 days, course participants learned how the basics of using git for version control. This is an important skill for good code management for workshop attendees to apply to their own research work.
Year(s) Of Engagement Activity 2022
URL https://kcl-carpentries.github.io/2022-05-18-KCL-online/
 
Description Bioinformatics workshop - unix shell 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The course was aimed at graduate students and other researchers across our partner institutes for the PRECISE-SPTB project. Over 3 days, course participants learned how to use the unix shell. This provided an important foundation for many bioinformatics applications for course participants to be able to apply to their future research.
Year(s) Of Engagement Activity 2022
URL https://kcl-carpentries.github.io/2022-05-11-KCL-online/
 
Description Capacity building/training visit 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact KCL team went on a week long training visit to Aga Khan University (partners in the study) Kenya. During this week, Professor Tribe gave two talks (one to the wider University) and a concluding talk to the week. She also met with the Principle of the University. We also during this week provided hands on training (in partnership with Co-i and a member of staff funded on the grant from MTC Gambia) for approx. six AKU staff and a researcher form Mozambique in microbiome analysis using nanopore and a remote (from KCL) bioinformatics training session.
Year(s) Of Engagement Activity 2023
 
Description Invited Talk UCL/GOS Online symposium- Linking Perturbations in the Microbiome to Clinical Outcomes in Childhood 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk (title: The influence of the vaginal environment on risk of spontaneous preterm birth) about our work related to preterm birth research and interests in how the infant gut is colonised during and following birth.
Year(s) Of Engagement Activity 2021
 
Description Invited Talk - CME Accredited Sidra Research Series - Influence of the cervicovaginal environment and risk of spontaneous preterm birth. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dissemination of our research related to preterm birth
Year(s) Of Engagement Activity 2022
URL https://www.sidra.org/events-calendar/event-details/pmfg2021
 
Description Invited Talk Polish Perinatal Society, Online Feb 2021. The Vaginal Environment and Risk of Spontaneous Preterm Birth 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dissemination of our research related to preterm birth - mechanism and discovery and validation of prediction tools
Year(s) Of Engagement Activity 2021
 
Description Invited talk - Aga Khan University Kenya 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Invited talk to collaborators and the wider department across AKU.
Year(s) Of Engagement Activity 2022
 
Description Invited talk - Colab Webinar Feb 2023 - Personalised prediction Quipp App - a tool for preterm birth 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact CoLab is a society that promotes research related to pregnancy complications. It engages with researchers and commerical partners worldwide. It was a route to disseminate our research on a predictive tool and additional work we have been doing on identifying novel cervico-vaginal and plasma based biomarkers.
Year(s) Of Engagement Activity 2023
URL https://pregnancycolab.tghn.org/
 
Description Invited talk - Newcastle University - Reducing Risk of Preterm Birth to Improve Life-Long Health 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact This was a workshop to encourage collaboration and interactions between those interested in pregnancy and linking with child health. It was a diverse audience including academics, students, patients, allied health professionals, people who worked in the community and policy makers.
Year(s) Of Engagement Activity 2023
URL https://www.ncl.ac.uk/medical-sciences/research/research-themes/reproduction/
 
Description Invited talk - Society for Reproductive Investigation, Prebic Satellite Meeting, Mar 2022. Utilising the QUIPP app and other novel biomarkers for prediction of preterm birth. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk disseminating our research and vision for biomarker discovery and prediction.
Year(s) Of Engagement Activity 2022
URL https://www.sri-online.org/meetings-calendar/2022/program/satellite-meetings/joint-satellite---myome...
 
Description PRECISE-PRETERM BIRTH RESEARCH IN PRACTICE TALK SERIES 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This is an ongoing series of talks which are open to anyone with an interest in PTB within our grant collaborators, partners and their institutions. They range from 'how to' talks to representation of research findings.
Year(s) Of Engagement Activity 2022
 
Description PRECISE-SPTB website 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact We have set up a study web page which can be accessed by the PRECISE network and general public.
Year(s) Of Engagement Activity 2022
URL https://precisenetwork.org/precise/precise-preterm-birth/
 
Description Precision Medicine and Functional Genomics 2021, Sidra Medicine, Doha, Qatar Dec 2021 - A Precision Approach to Prediction of Spontaneous Preterm Birth. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk disseminating our research related to preterm birth, understanding the role of the cervico-vaginal environment in causing preterm birth, and identification of biomarkers for the prediction of preterm birth
Year(s) Of Engagement Activity 2022
 
Description Widening participation (for high school students) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We invited twenty year12 students through the Widening Participation route from non-selective schools in the locality mainly the Southwark area. Pupils all had an interest in medicine and allied health care applications at uni. As part of this, we ran a hands-on coding session which session opened up new possibilities about coding and bioinformatics.

Overall, this enabled students to be given opportunities to explore and learn about both healthcare roles and the research within them and enabled them to have both hands-on experiences, motivational sessions and be guided on how to apply for courses at uni by improving their personal statements etc. Their feedback was encouraging - they enjoyed meeting real-life academics and for many it has either confirmed what they would like to study or enabled them to make more informed decisions about their future careers.
Year(s) Of Engagement Activity 2021
 
Description World School Perinatal Medicine Course - Screening for preterm labour: risk prediction models 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This was an invited talk that covered much of our teams work on preterm including our research related to the potential of using biomarkers related to the vaginal environment to aid prediction of preterm birth. Talk written and planned by Rachel Tribe (given by Dr Jenny Carter)
Year(s) Of Engagement Activity 2022
URL https://meet.perinatalmedicine.org/home/course/preterm-birth-wspm-11-12-march-2022/18