A novel pathway in the control of memory T cell function during immune responses to viral re-infection.

Lead Research Organisation: University of Manchester
Department Name: School of Biological Sciences

Abstract

When we are infected with a microbe such as a virus for a second time, we deal with it faster and more efficiently than the first time. This occurs because of a phenomenon called immunological memory, and is the cornerstone of how vaccinations protect us. Crucial cells underpinning this better immune response are memory T cells. However, we do not understand how these cells are controlled to fight off infections quickly and effectively, but not cause harm to our own bodies in the process.

Our recent work has identified a new pathway by which memory T cell responses are controlled. Using mouse models, we have discovered that certain types of memory T cell can limit how strong the immune response is during viral re-infection, via a molecule called TGF-beta. Removing this pathway experimentally appears to promote a more rapid response to re-infection. This raises many important questions that we will address in this project: How is the novel pathway controlled? In what way does it contribute to the immune response to viral re-infection? Is this pathway active in humans when re-infected with a virus? Together, work in this proposal will characterise this new phenomenon, increase our understanding of how immunological memory works and identify new potential ways of promoting more effective responses to viral infection.

Technical Summary

Immunological memory underpins how we respond to pathogens more robustly upon re-infection, and how vaccinations work. Memory T cells are critical to these responses. However, it is poorly understood how memory T cells are regulated to promote eradication of the pathogen upon re-infection, whilst preventing over-exuberant responses that could damage the host.

In new preliminary work we show that a subset of CD4+ effector memory T cells activate the cytokine TGF-beta, via the cell surface receptor integrin alphav beta8. Intriguingly this pathway appears to suppress the CD8+ T cell response during murine models of influenza re-infection and experimentally removing the pathway promoted a stronger response that increased viral clearance. This raises many important questions on how this contributes to the regulation of CD8+ T cells.

In this project we will characterise the cellular and molecular mechanisms underlying this new paradigm, identify its functional importance in host immune defence, and its role in regulating responses to viral re-infection in humans. The results will provide a step-change in our understanding of how memory T cell responses are controlled during viral infection, and reveal candidate mechanisms that could be targeted to promote more effective responses to infection.
 
Description A map of the intestine following regulatory T cell infusion into patients with active Crohn's Disease at single-cell and spatial resolution.
Amount $2,980,000 (USD)
Organisation The Leona M. and Harry B. Helmsley Charitable Trust 
Sector Charity/Non Profit
Country United States
Start 12/2022 
End 12/2025
 
Description CMFT collaboration 
Organisation Manchester University NHS Foundation Trust
Country United Kingdom 
Sector Public 
PI Contribution We are lead researchers and obtain clinical samples from the above organisations.
Collaborator Contribution NHS organisations facilitate obtaining clinical samples for our research.
Impact 2 publications with CMFT collaborators.
Start Year 2015
 
Description Collaboration on microbiome-mediated regulation of macrophaes in IBD 
Organisation Yale University
Country United States 
Sector Academic/University 
PI Contribution We have initiated a collaboration with Dr. Noah Palm at Yale University to help with our work determining the potential role of the microbiota in IBD regulating intestinal macrophage function. Dr. Palm and I were going to apply for a Networking Grant through Kenneth Rainin to promote this interaction and collaboration. Unfortunately the COVID pandemic hit and this ha dto be shelved for now. Will pick back up when some normality is restored. Contribution of our team was to provide macrophage expertise to determine how the IBD and non-IBD microbiota affects their functional properties (with a specific focus on activation of TGF-beta along with other more general read-outs such as cytokine production and phagocytic ability).
Collaborator Contribution Dr. Palm will provide fecal water samples to determine the role of non-IBD and IBD microbiota in regulating macrophage function.
Impact No outcomes as yet- on hold due to COVID pandemic.
Start Year 2020