Interrogating NRK1 activity as a central regulator of CD4+ T cell metabolism, fate and function

Lead Research Organisation: University of Birmingham
Department Name: Inst of Metabolism & Systems Research

Abstract

T cells are a critical part of our immune system which co-ordinate the activity of all other immune cells (white blood cells) to protect us from infections and cancer. However, sometimes T cells can be over-active, which can be harmful. When this occurs it can cause diseases such as rheumatoid arthritis, multiple sclerosis and diabetes. These are known as inflammatory or autoimmune diseases, a process where the body's own immune cells attack it. Current therapies for these diseases do not always work well, meaning that many patients still suffer with severe symptoms and these diseases still place a significant burden on the NHS.

In the last decade our understanding of how T cells work has been transformed. We have learned that the activity of T cells is very tightly linked to a series of chemical processes known as metabolism, which occurs in every cell of the human body. These processes are used to break down nutrients such as sugar to provide energy and building blocks for the cell. Recent research has revealed that T cells can dramatically change how they break down nutrients when they carry out their protective (normal activity) or harmful (over-active) functions. Studies in patients with infectious and autoimmunity have revealed that these processes are often abnormal in T cells in these conditions. It may be possible therefore, that with new drugs that correct these changes in metabolism, we can restore normal, safe T cell activity, and better treat these diseases.

This proposal will investigate one possible pathway to control T cell metabolism and restore their normal function. Specifically, I propose to test how the production of a molecule called nicotinamide adenine dinucleotide (NAD) is linked to T cell metabolism and their protective and harmful activity. NAD is produced from vitamin B3 and is required for all stages of the breakdown of sugar and other nutrients in cells. It has already identified that when T cells are activated (switched on) in the laboratory, they turn on an enzyme called NRK1 which plays an important role in making NAD from vitamin B3. Additionally, when NRK1 is not active, T cells have much lower rates of metabolism and produce much less of certain key immune signals. I now propose to build on these observations to understand in much more depth precisely how NRK1 controls T cell activity. As part of this project I will also change NRK1 activity in T cells in laboratory models of infection and autoimmunity. This will help us to test whether new drugs targeting this molecule might be helpful in these conditions.

Technical Summary

CD4+ T cells co-ordinate the immune response and are essential for adaptive immunity and protection from infectious disease. Consistently, CD4+ T cell dysfunction is associated with uncontrolled infection, whilst, conversely, their dysregulated activity is implicated in chronic inflammatory and immune-mediated disease. Despite recent therapeutic advances, these conditions continue to cause significant morbidity to many patients and place substantial financial burdens on the NHS. In the last decade, research has revealed that CD4+ T cell fate and function are fundamentally underpinned by dynamic changes in their metabolism. Furthermore, T cell metabolic dysfunction is reported in chronic viral infection and numerous autoinflammatory diseases, including systemic lupus erythematosus (SLE), type I diabetes and multiple sclerosis (MS). This has raised the exciting possibility of targeting CD4+ T cell metabolism as a novel therapeutic approach to correct their activity in these conditions, which has support from initial laboratory studies. Yet, the concerted activity of numerous diverse and flexible metabolic pathways supports T cell function, meaning that targeting one enzyme or pathway in isolation may have limited efficacy. Therefore, identification of central metabolic regulators in these cells would significantly advance this area of research and translation into new therapies. Our pilot data identify that activity of the NAD synthesis enzyme, nicotinamide riboside kinase 1 (NRK1) within CD4+ T cells has a profound effect on their overall metabolic capacity and immune function, and may therefore be one such central regulator. The proposed research will interrogate this in significant depth, employing cutting-edge metabolic analyses alongside established immunological approaches including experimental models of infectious and immune-mediated disease.
 
Title Generation of T cell-specific NRK1 KO mouse model 
Description Deletion of the metabolic enzyme NRK1 specifically in T cells (cre/flox system) allows interrogation of the role of this enzyme intrinsically within these cells. This supports my ongoing research project where we are aiming to understand the importance of this enzyme in T cells and whether it can be targeted to restore normal immune responses in infectious and chronic inflammatory disease. 
Type Of Material Model of mechanisms or symptoms - mammalian in vivo 
Year Produced 2022 
Provided To Others? No  
Impact Development of this research tool is critically supporting the ongoing research on my MRC research grant and will eventually be published once this research is complete. 
 
Title Optimisation of stable isotope-based tracing approaches for human and murine immune cell populations in vitro 
Description This approach allows interrogation of metabolic pathway usage in cells by tracing the fate of stable isotope-labeled metabolic substrates e.g. glucose. Working together with scientists using this technique in Birmingham we have optimised it's application to human and murine primary immune cells which is supporting our research and that of other groups who are collaborating with us. 
Type Of Material Model of mechanisms or symptoms - in vitro 
Year Produced 2020 
Provided To Others? No  
Impact New collaborations with other scientists. Generation of key research data for my own projects. 
 
Description Collaboration with Dr Emily Gwyer-Findlay 
Organisation University of Edinburgh
Country United Kingdom 
Sector Academic/University 
PI Contribution We perform metabolic assays to understand the mechanistic basis for how the antimicrobial peptide cathelicidin promotes the inflammatory activity of T cell populations.
Collaborator Contribution Dr Findlay's lab assess the immune function and phenotype of T cells and how this is modulated by the antimicrobial peptide cathelicidin in vitro and in vivo.
Impact This work has now received funding in the form of a Royal Society Research Grant, and generated key datasets that will support the preparation of manuscripts and further fuinding applications.
Start Year 2021
 
Description Collaboration with Dr Rebecca Drummond 
Organisation University of Birmingham
Department School of Immunity and Infection
Country United Kingdom 
Sector Academic/University 
PI Contribution We contribute knowledge, skills and experimental techniques for the analysis of immune cell metabolism, which supports Dr Drummond in her research on the immune response to fungal infections.
Collaborator Contribution Dr Drummond and her research group contribute knowledge, skills and key experimental models of fungal infection, which we are using to understand the role of NAD synthesis in immune cells during an immune response.
Impact Development of experimental approaches and models, and generation of data to support completion of the research proposed in this MRC grant.
Start Year 2020
 
Description Collaboration with Prof Daniel Tennant 
Organisation University of Birmingham
Country United Kingdom 
Sector Academic/University 
PI Contribution We provide knowledge, skills and technical expertise on the study of immune cell populations which supports Prof Tennant's research on blood cancer, specifically Multiple Myeloma.
Collaborator Contribution Prof Tennant's research group contribute technical expertise and knowledge on the analysis of cellular metabolic pathway activity, and access to equipment including gas chromatography mass spectrometry.
Impact Sharing of advice, experimental expertise and knowledge. Manuscripts in preparation for publication.
Start Year 2017
 
Description Collaboration with Prof Gareth Lavery 
Organisation Nottingham Trent University
Country United Kingdom 
Sector Academic/University 
PI Contribution Using our skills and experience in immunology we are studying the role of the NAD-synthesis enzyme NRK1 in immune cells. Prof Lavery has studied this enzyme previously in other contexts, but not in the immune system where we are bringing new results and knowledge.
Collaborator Contribution Prof Lavery and his team are contributing knowledge, skills and key experimental models required to study the activity and role of NAD-synthesis enzymes including NRK1 in the immune system.
Impact Sharing of knowledge, expertise and experimental models to complete the research proposed in this grant.
Start Year 2020