How does SARS CoV-2 infect blood vessels?

Lead Research Organisation: University of Sussex
Department Name: Sch of Psychology

Abstract

People who are severely affected by COVID-19 show symptoms of damage to their blood system, as well as to their lungs. For example, their blood may form lots of clots, which can cause damage to lots of different tissues in the body. Also other tissues than the lungs may be damaged in COVID-19, such as the heart, and it is likely that infection spreads to these tissues through the blood system. It will be important to know how blood vessels are infected by SARS CoV-2, the virus that causes COVID-19, to understand how damage to blood vessels and other tissues occurs. Our research will discover which types of cells in blood vessels become infected with SARS CoV-2, which will help us understand how blood vessels and other tissues become damaged in COVID-19, and suggest which cells to target to prevent this damage. The two most likely cells that might be infected are endothelial cells, which form the inside surface of blood vessels, or pericytes, which form part of the outer wall of very small blood vessels. In our work, we will use a special inactive version of SARS CoV-2 that cannot replicate but will label cells that have taken it up (become infected). We will apply this inactive version of the SARS CoV-2 virus to endothelial cells and pericytes that are grown in a dish, and see which cell type becomes most strongly labelled, indicating that it takes up the virus most strongly.

We then want to find out whether the blood vessels are differently infected in different organs, and whether this could explain some of the non-respiratory symptoms that people suffer from. To investigate this, we will use mice. However, SARS CoV-2 does not infect mouse cells, so we will use two approaches. In one set of experiments, we will use genetically altered mice that express the human version of the protein that binds SARS CoV-2. In another set of experiments we will use normal mice and a version of the inactive virus that has a mutation so it binds to the mouse version of the SARS CoV-2 receptor protein. By injecting the inactive virus into the bloodstream of these mice, we will discover which cells the virus infects in different tissues, including the heart and brain.

Finally, we want to find out what factors affect the severity of infection with SARS CoV-2. We will test whether existing inflammation makes it easier for SARS CoV-2 to infect blood vessels, by injecting mice with a bacterial protein that triggers an inflammatory response, before injecting the inactive SARS CoV-2 virus. We will also test whether a gene called APOE4, that seems to be linked with severe COVID-19 in humans, increases infection of blood vessels in our experimental mice.

Together, our experiments will discover how blood vessels become infected with SARS CoV-2, indicating which cells to target with treatments, and will test whether risk factors for severe COVID-19 illness could act by increasing the ability of SARS CoV-2 to infect cells on blood vessels.

Technical Summary

Vascular symptoms including hypercoagulation are a key feature of severe COVID-19. They have been assumed to arise via infection of endothelial cells, however recent RNAseq analyses revealed that instead it is pericytes - vascular mural cells with intimate connections with endothelial cells and several vital roles in vascular function - which express the receptor, ACE2, which allows SARS CoV-2 to enter cells. Determining which cells mediate vascular and therefore extrapulmonary organ infection is vital for selecting optimal therapeutic interventions. Through our groups' expertise in vascular biology, virology and clinical haematology, we will identify whether pericytes or endothelial cells are the primary vascular target of SARS CoV-2.

We will utilise a pseudotyped SARS CoV-2 virus (PV), which undergoes a single round of infection and expresses a reporter protein in target cells. We will first compare the efficiency of infection in cultured human pericytes and endothelial cells, before injecting PV into mice and tracking reporter expression across pericytes and endothelial cells of different organs. As SARS CoV-2 does not bind murine ACE2, parallel experiments will test a PV mutated to bind murine ACE2 as well as mice expressing human ACE2. Because increased inflammation and APOE4 genotype both alter vascular permeability and are associated with severe COVID19, we will repeat these experiments in animals with LPS-induced inflammation or that express human ApoE3 or 4.

By identifying the cells that first become infected with SARS CoV-2 and the conditions that increase infection, this project will enable proper targeting of therapies to the relevant cells.

Publications

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Astin R (2023) Long COVID: mechanisms, risk factors and recovery. in Experimental physiology

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Astin R (2023) Long COVID: Mechanismen, Risikofaktoren und Genesung in Kompass Pneumologie

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Bonnar O (2020) First, tau causes NO problem in Nature Neuroscience

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Brebner LS (2020) The Emergence of a Stable Neuronal Ensemble from a Wider Pool of Activated Neurons in the Dorsal Medial Prefrontal Cortex during Appetitive Learning in Mice. in The Journal of neuroscience : the official journal of the Society for Neuroscience

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Howarth C (2021) More than just summed neuronal activity: how multiple cell types shape the BOLD response. in Philosophical transactions of the Royal Society of London. Series B, Biological sciences

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McFall A (2020) UK consensus on pre-clinical vascular cognitive impairment functional outcomes assessment: Questionnaire and workshop proceedings. in Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

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Mishra A (2021) Key relationships between non-invasive functional neuroimaging and the underlying neuronal activity. in Philosophical transactions of the Royal Society of London. Series B, Biological sciences

 
Description We have found that vascular pericytes and endothelial cells are differentially infected by SARS CoV-2 with significant differences across variants of concern. We also found that inflammatory state and APOE genotype significantly affect infectivity causing a dramatic increase in infectivity of some but not all variants. These results are in preparation for publication.
Exploitation Route We have raised important questions that need answers, namely by what mechanisms is infectivity increased, and can this be prevented? Furthermore, if infectivity is reduced does this reduce the impact of acute or post-acute COVID19 disease? We have applied for more funding to answer these key questions, but hope that this direction of research will be valuable for others too in targeting treatments and research towards modulation of vascular infectivity.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

 
Title Inflammation Index Analysis Code 
Description This is the analysis code for conducting the microglial analysis pipeline reported in https://royalsocietypublishing.org/doi/10.1098/rsob.210045. It allows extraction of numerous morphological features from 3D stacks of images of microglia and dimensionality reduction to calculate a sensitive index of altered morphology (e.g. in inflammation) from a training dataset that can be used on a separate dataset to detect differences in morphology across experimental conditions. 
Type Of Material Data analysis technique 
Year Produced 2021 
Provided To Others? Yes  
Impact This pipeline entirely uses open access software so brings complex image analysis to many researchers including those otherwise inexperienced in image analysis who would otherwise rely on expensive commercial software solutions that are less powerful. 
URL https://github.com/BrainEnergyLab/Inflammation-Index
 
Title Supporting Data for Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed 
Description The data provided was used to generate the figures in Shaw et al (2022); Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed, Frontiers in Aging Neuroscience. Full details of how the data was generated and processed is provided in that paper. The ReadMe file attached to this record gives details on the data including measurements and column headings.A single Excel spreadsheet containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 3-6 as individual work sheets (uploaded as .xlsx), and individual .csv files containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 2-6 (for non-proprietary format). Abstract In understanding the role of the neurovascular unit as both a biomarker and target for disease interventions, it is vital to appreciate how the function of different components of this unit change along the vascular tree. The cells of the neurovascular unit together perform an array of vital functions, protecting the brain from circulating toxins and infection, while providing nutrients and clearing away waste products. To do so, the brain's microvasculature dilates to direct energy substrates to active neurons, regulates access to circulating immune cells, and promotes angiogenesis in response to decreased blood supply, as well as pulsating to help clear waste products and maintain the oxygen supply. Different parts of the cerebrovascular tree contribute differently to various aspects of these functions, and previously, it has been assumed that there are discrete types of vessel along the vascular network that mediate different functions. Another option, however, is that the multiple transitions in function that occur across the vascular network do so at many locations, such that vascular function changes gradually, rather than in sharp steps between clearly distinct vessel types. Here, by reference to new data as well as by reviewing historical and recent literature, we argue that this latter scenario is likely the case and that vascular function gradually changes across the network without clear transition points between arteriole, precapillary arteriole and capillary. This is because classically localised functions are in fact performed by wide swathes of the vasculature, and different functional markers start and stop being expressed at different points along the vascular tree. Furthermore, vascular branch points show alterations in their mural cell morphology that suggest functional specialisations irrespective of their position within the network. Together this work emphasises the need for studies to consider where transitions of different functions occur, and the importance of defining these locations, in order to better understand the vascular network and how to target it to treat disease. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact This will allow other people to mine our data for their own research purposes, which may involve other studies into neurovascular function. 
URL https://sussex.figshare.com/articles/dataset/Supporting_Data_for_Gradual_Not_Sudden_Change_Multiple_...
 
Description Article summary for the Science Media Centre 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I wrote a summary, for the Science Media Centre, of the findings, interpretation and questions raised of an article that was widely taken up by the press (on Viagra protecting from Alzheimer's disease). Based quotes were used by several publications including The Sun, The Telegraph, the New York Post, reaching an approximate audience of 7 million.
Year(s) Of Engagement Activity 2021
URL https://www.sciencemediacentre.org/expert-reaction-to-study-identifying-sildenafil-viagra-as-a-candi...