Identification of therapeutic targets in C9orf72-linked FTD and MND

Lead Research Organisation: University of Sheffield
Department Name: Neurosciences

Abstract

Motor Neuron Disease (MND) is a devastating and incurable adult-onset motor disorder. It affects the neurons controlling muscle movement, thus causing muscle weakness and degeneration, leading to paralysis and death by respiratory failure. The most common genetic cause of MND is a mutation in the gene C9orf72. Interestingly, mutations in this gene are also the most frequent cause of frontotemporal dementia (FTD), which, in turns, affects neurons involved in higher functions, such as language and behaviour.
Although the two pathologies share the same genetic cause, they trigger two different diseases that in some patients progress from one to the other. The factors involved in the development of one or the other disorder are still unknown and this is a significant challenge for the identification of therapeutic targets. In addition, in vitro and in vivo models used in the laboratory to study disease mechanisms and identify therapeutic targets rely on the expression of the mutant gene C9orf72, which is common to both disorders.
The challenge is, therefore, to understand more in depth the underlying pathological consequences of the mutation in the cells affected by the disease, both neurons and surrounding non-neuronal cells and then model them accordingly. This may then provide the opportunity to identifying key points of intervention to alter these ongoing disease mechanisms and design therapeutics for specific patient benefit. Gaining this human biological insight and constructing models to test the biological hypotheses is a key challenge for companies such as Cerevance in their identification of new targets for the design of truly novel therapeutics for neurodegenerative disease.
To solve this challenge, Dr Ferraiuolo's team at the Sheffield Institute for Translational Neuroscience (SITraN) and Cerevance have come together to share complementary expertise and technologies. Dr Ferraiuolo has developed an in vitro model that recapitulates important and distinct aspects of the two neurodegenerative diseases and, therefore, it is likely to be a suitable model for target validation and drug discovery. Cerevance has optimised cutting-edge NETSseq (Nuclear Enriched Transcript Sort sequencing) technology to unravel disease mechanisms and developed novel drug development strategies.
The consortium between Dr Ferraiuolo at SITraN and Cerevance aims to
1. Perform deep transcriptomic on cortical and spinal tissue of glia and neurons from C9orf72 MND & FTD patients and controls to identify the presence of different physiological and pathological pathways occurring in the areas that are affected or spared in the 2 diseases.
2. Perform deep transcriptomic on in vitro induced astrocytes and cortical and motor neurons from C9orf72 MND & FTD patients and controls to assess the presence of the pathways identified in post-mortem tissues
3. Apply bioinformatic analysis of said datasets showing impact of disease on individual cell types and network function / dysfunction
4. Validate potential therapeutic targets by suppressing or overexpressing specific molecules in the human derived cellular systems
5. Test drugs for potential therapeutic targets.
To accomplish these aims, Dr Myszczynska, who has recently completed her PhD training and is currently a post-doctoral researcher in Dr Ferraiuolo's team, will spend 2 years at Cerevance. Dr Myszczynska will receive world-class training in novel approaches for drug development and NETSseq, a cutting edge technique for deep transcriptomics of complex tissues. In turn, she will support Cerevance with her expertise acquired in over 6 years at SITraN in the field of MND and FTD, in vitro disease modelling using patient-derived cells and bioinformatics. In conclusion the knowledge exchange between Cerevance and SITraN through the secondment of Dr Myszczynska, will not only answer important biological questions, but will also bridge knowledge gaps in the academic and industrial sectors.

Technical Summary

The most common genetic cause of Motor Neuron Disease (MND) and frontotemporal dementia (FTD) are mutations in the gene C9orf72. Although the two pathologies share the same genetic cause, they trigger two very different diseases. Nevertheless, due to their common genetic cause, C9orf72-linked MND and FTD are modelled in vitro and in vivo as a single disease. The challenge is understanding how the same mutation leads to two different pathologies, whether the underlying driving mechanisms are the same and, therefore, can be targeted with the same therapeutic approaches.
To solve this challenge, Dr Ferraiuolo's team at SITraN and Cerevance have come together to share complementary expertise and technologies. Dr Ferraiuolo has developed a human cell reprogramming protocol that retains important and distinct aspects of the two diseases and, therefore, likely to be a suitable model for target validation and drug discovery. Cerevance has optimised cutting-edge NETSseq (Nuclear Enriched Transcript Sort sequencing) technology to unravel disease mechanisms at the cell type specific level and developed novel drug development strategies.
The consortium between Dr Ferraiuolo and Cerevance, through the secondment of Dr Myszczynska, aims to:
1. Use NETSseq to perform deep transcriptomic analysis of cortical and spinal tissue of glia and neurons from C9orf72 MND & FTD patients and controls, as well as C9orf72 MND & FTD patient and control reprogrammed astrocytes and cortical and motor neurons.
2. Apply bioinformatic analysis of said datasets showing impact of disease on specific cell types and network function / dysfunction
3. Use this information to select targets as potential novel therapeutic interventions
4. Biologically validate these targets using human derived disease relevant cellular systems
5. Pharmacologically validate these targets as potential approaches for novel therapeutic intervention.

Publications

10 25 50
 
Description Using machine learning approaches to stratify ALS patients based on in vitro drug response
Amount $50,000 (USD)
Organisation ALS Finding a Cure 
Sector Charity/Non Profit
Country United States
Start 12/2022 
End 11/2023
 
Title NET-Seq on co-cultured cells 
Description While NET-Seq has been applied to complex posts-mortem tissues, to our knowledge it has never been applied to cultured cells in vitro. As part of the collaboration with Cerevance we have optimised this technique to culture together astrocytes and motor neurons, lift them into a single cell suspension, label their nuclei and separate them with FACS sorting to then perform RNA-seq. This allows to capture the behaviour of the glial and neuronal cells influenced by the cross-talk. 
Type Of Material Technology assay or reagent 
Year Produced 2023 
Provided To Others? No  
Impact This is a very recent development that has not had measurable impact yet, but it might be helpful in replacing the use of animals for this kind of studies. Normally tissue is used because of its complexity, but if the cross-talk between human cells can be recapitulated in vitro, it is likely that scientists might prefer this method to using animal tissues. In addition, due to the paucity of human post-mortem tissue availability, this method is likely to support drug target identification more rapidly than the use of post-mortem tissue. 
 
Description Identification of therapeutic compounds targeting TDP proteinopathy in ALS 
Organisation Takeda Pharmaceutical Company
Country Japan 
Sector Private 
PI Contribution We will use our HTS assay to assess the ability of drugs provided by Takeda to rescue motor neurone survival and decrease TDP proteinopathy. We will also transfer our in vitro screening assays to Takeda.
Collaborator Contribution Takeda will be sharing their drug library and their expertise in drug screening assays.
Impact We are still in very early phases and no output exists yet
Start Year 2023
 
Description Pint of Science 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact My team explained to the general public in a pub how we reprogram skin cells into neurons and we use them to identify potential drugs
Year(s) Of Engagement Activity 2022
URL https://www.sheffield.ac.uk/news/pint-science-bringing-scientists-out-lab-and-your-local-pub
 
Description platform presentation at More Than Neurons III 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Monika Myszczynska presented her data an international conference in Turin in front of >100 scientists
Year(s) Of Engagement Activity 2022