Targeted modulation of neutrophil activity: impact on intestinal immunopathology

Lead Research Organisation: UNIVERSITY OF OXFORD
Department Name: Kennedy Institute

Abstract

The intestinal immune system encounters the challenge of remaining unresponsive to the commensal microflora and food antigens whilst being able to mount a rapid immune response upon facing pathogens. Four major components contribute to gut homeostasis, including the epithelium, immune cells, intestinal microbes, and dietary metabolites. The importance of a tight control of immune response is emphasized in the context of chronic auto-inflammatory bowel diseases (IBD), such as Crohn's disease (CD) and Ulcerative Colitis (UC), where an immune response against commensals becomes dis-regulated.

While much of investigation into IBD has been focused on the peak of immunopathology driven by specific innate immune cells, called monocytes, and adaptive immune cells, called T helper (Th) cells, the first defining events in initiation of intestinal inflammation received less attention. Particularly, the specific role of another type of innate immune cells, called neutrophils, during colitis has not been clearly delineated. Neutrophils rapidly traverse the vascular endothelium to reach the intestinal lamina propria. Their presence in human colonic biopsies is considered to be a sign of active disease and is increasingly used as a secondary endpoint in clinical trials in UC. In both peripheral blood and mucosal tissue of IBD patients, they display altered phenotype and effector functions. Neutrophil activation was also reported to affect T cell populations, specifically influencing pathogenic Th cells. However, the extent of neutrophil contributions into the initiation and propagation of pathological intestinal inflammation, their interactions with other immune cells and immune-imprinting left on the tissue, remain largely unexplored.

Our recent findings demonstrate that, despite limited residence times in tissues, neutrophils can tailor their properties to mount specific and intrinsically regulated inflammatory response. Moreover, we have identified key molecular regulators specifically controlling neutrophil maturation or effector functions. This project will examine the functional impact of controlled modulation of neutrophil activity on the immunopathology of intestinal inflammation using the recently generated unique tools, such as genetically modified in vitro and in vivo models, newly discovered chemical inhibitors etc, and cutting-edge imaging and single cell genomic approaches. This may lead to the development of a new class of therapeutic strategies, based on selective modulation of neutrophil biology, to combat pathological inflammation and associated inflammatory disorders, such as IBD.

Technical Summary

Neutrophils have been long considered as transcriptionally inactive cells, rapidly mobilised and degranulating in response to microbial insults. Our recent findings, and the developments in the field, have firmly established neutrophils as transcriptionally active cells that can tailor their properties to mount tissue specific and transcriptionally regulated inflammatory response and to support organ homeostasis. However, their molecular contribution in individual immunopathology, e.g. in ulcerative colitis (UC) where they are considered to be a sign of an active disease, has not been clearly delineated.

Our pilot data indicate that neutrophils are preferentially recruited to the mid and distal colon at the onset of Helicobacter hepaticus (+anti-IL-10R antibodies) driven mouse model of colitis, which are characterised by the elevated inflammation score. They also show that a neutrophil-specific knock-out of IRF5, one of the regulators of neutrophil effector functions identified by us, reduces immunopathology in this model. Building on these observations, we will first use cutting-edge single cell genomic approaches and advanced imaging to examine whether the site-specific neutrophil infiltration controls pathogenic monocyte recruitment and uncover neutrophil mediators involved. Next, we will investigate the mechanisms behind the reduced intestinal immunopathology observed under modulation of neutrophil activation, i.e. by neutrophil-specific ablation of IRF5. Finally, we will assess the therapeutic potential of a chemical inhibitor defactinib, shown by us to target the IRF5 signalling pathway, to block IRF5 activation in neutrophils, using both mouse colitis models and human pinch biopsies from the colonic mucosa of UC patients.

Overall, the proposed project will extend our understanding of the fundamental role neutrophils play at the onset of intestinal immunopathology, identify the regulators involved and map putative therapeutic strategies.

Publications

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Title Dancing Neutrophils 
Description Inspired by Miss Julia Salafranca (DPhil student in the Udalova lab) "Dancing Neutrophils" show was created for the Art and Science Festival in Oxford. 
Type Of Art Performance (Music, Dance, Drama, etc) 
Year Produced 2023 
Impact Kids and genera public visiting the University Museum in oxford were treated to a dance showing how neutrophils recognise and fight microbes 
URL https://reuben.ox.ac.uk/event/art-science-day
 
Description MRC IIB
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
Impact To contribute to assessing and ranking applications using the published assessment criteria and advising the budget holder on funding decisions within the annual budget allocated by Council, to advising to Strategy Board and other Council bodies on the development of strategy, policy and the management of the research portfolio, offering scientific oversight and advises on the direction of MRC institutes, units and centres.
URL https://www.ukri.org/who-we-are/mrc/
 
Description Shaping the neutrophil: morphological, genomic, and functional maturation
Amount £855,605 (GBP)
Funding ID BB/Y004752/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 06/2024 
End 07/2027
 
Title Neutrophil Morphology and Function 
Description Analysis of Neutrophil Morphology and Function Under Genetic Perturbation of Transcription Factors In Vitro 
Type Of Material Model of mechanisms or symptoms - in vitro 
Year Produced 2023 
Provided To Others? Yes  
Impact Hoxb8 cells are immortalized myeloid progenitors that maintain their multipotent potential and can be differentiated into neutrophils. Genetic modification of Hoxb8 cells can be used as a model system for the functional analysis of regulators of neutrophil maturation and effector functions, such as transcription factors. Here we describe the generation of transcription factor (TF) knockout Hoxb8 cell lines in vitro with the lentivirus (lenti)CRISPR-Cas 9 technique. After their differentiation into neutrophils, the study of their maturation profile, morphology, and effector functions, including NETosis, phagocytosis, and ROS production, is described. 
URL https://pubmed.ncbi.nlm.nih.gov/36264489/
 
Title Distal vs proximal colon RNA-seq 
Description RNA-seq analysis of colonic samples from Hh+aIL10R induced colitis model stratified by position: distal vs proximal 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? No  
Impact Allows for identification of specific transcriptional signatures 
 
Description FP 
Organisation University College Oxford
Country United Kingdom 
Sector Academic/University 
PI Contribution expertise in IRF5 and neutrophil and macrophage biology
Collaborator Contribution expertise in IBD and colitis animal models
Impact joint DPhil studentships 2013-2016; 2017-2022 co-PI on the MRC project grant
Start Year 2013
 
Description JJ - microbiome 
Organisation University of Oxford
Department Kennedy Institute of Rheumatology
Country United Kingdom 
Sector Academic/University 
PI Contribution neutrophil behaviour and biology in inflamed colon
Collaborator Contribution Expertise in microbiome analysis (experimental and computational)
Impact Submission of grant application to the Kenneth Rainin Foundation
Start Year 2023
 
Title Shiny geomx 
Description this app was designed to take the output from geomxngspipeline (.dcc files) along with annotations and .pkc files that are aggregated into a NanoStringGeoMxSet. The app wraps functionality of geomxTools in order for users to perform segment and gene quality control and visualise their data before downstream data analysis. 
Type Of Technology Webtool/Application 
Year Produced 2023 
Open Source License? Yes  
Impact provides an interface to assess the quality of geomx spatial transcriptomic data 
URL https://github.com/OxfordCMS/OCMS_Shiny_Geomx