MICA: Deciphering the mechanism of action of miR-125b in beta cells and its therapeutic potential in Diabetes
Lead Research Organisation:
Imperial College London
Department Name: Metabolism, Digestion and Reproduction
Abstract
Over 8.5% of the world's adult population suffer diabetes. If poorly treated, diabetes leads to very high blood sugar levels which worsen the disease and lead to complications such as kidney failure and blindness, shortening life expectancy by 10 years in the case of type 2 diabetes (T2D).
Pancreatic beta cells are in charge of secreting insulin in response to rises in blood sugar. Failure of beta cells to secrete enough insulin contributes to the development of diabetes. Importantly, the prevalence of high-blood sugar accelerates beta cell failure and contributes to beta cell loss by mechanisms which are not yet clear. A better understanding of the process leading to beta cell failure is vital for the development of drugs capable of stopping the development of T2D.
MiRNAs are small RNA molecules that do not produce proteins themselves but are capable to reduce the rate at which other proteins (their "targets") are produced. MicroRNAs exist in beta cells that regulate important functions such as their capacity to produce and secrete insulin. Also, changes in the levels of certain miRNAs in beta cells are associated with the development of T2D.
We have recently made three important findings. Firstly, when mouse and human beta cells are exposed to high levels of glucose, their levels of the miRNA miR-125b (miR-125b-5p) go up. Secondly, the introduction of additional miR-125b in the beta cells of mice causes them to produce and secrete less insulin and develop diabetes. We have also observed that reducing the amount of miR-125b in human beta cells in culture improves their capacity to secrete insulin in response to glucose. Accordingly, we hypothesize that beta cell selective inhibition of miR-125b has the potential to protect beta cell function from hyperglycaemia. Thirdly, we have seen that high levels of miR-125b lead to the appearance of enlarged lysosomes while low levels of miR-125b lead to changes in mitochondria morphology and in the content of genes related to mitochondrial function. Lysosomes and mitochondria are subcellular organelles very important for the recycling of cellular components and waste and for energy production, respectively. Thus, we hypothesize that miR-125b regulates beta cell function by modulating lysosomal and/or mitochondrial function. Both processes are essential for adequate beta cell function and are altered in diabetes.
Additionally, we have demonstrated that miR-125b targets the cation-dependent lysosomal mannose-6-phosphate receptor (M6PR) which transports lysosomal enzymes to lysosomes for their adequate functioning. Nevertheless, the role of M6PR for lysosomal and secretory function in beta cells hasn't been studied.
Thus, the specific aims of this proposal are to determine:
1. Whether and how selective elimination/reduction of miR-125b in beta cells prevents T2D progression
2. The role of miR-125b in lysosomal and mitochondrial function
3. The function of M6PR in beta cells
To achieve these aims we will use a combination of
- Mice deleted for/overexpressing miR-125b selectively in beta cells. The use of mice is necessary since maintenance of glucose homeostasis requires interplay between all metabolic tissues and therefore these experiments need to be done in the context of the whole body.
- Donated human islets, modified to contain more or less miR-125b. The use of human samples is essential to ensure the translatability of our findings to the clinic.
- Mouse and human beta cell lines, modified to contain more or less miR-125b or M6PR, which allow to study biological processes in detail and reduces an unnecessary use of animals.
MiRNAs are novel candidates for drug targeting and our study will provide preclinical data on the potential of beta cell miR-125b inhibition for the treatment of T2D. It will also provide new fundamental insights into how beta cells work in health and disease, which, in the long term, could reveal new ways to treat diabetes.
Pancreatic beta cells are in charge of secreting insulin in response to rises in blood sugar. Failure of beta cells to secrete enough insulin contributes to the development of diabetes. Importantly, the prevalence of high-blood sugar accelerates beta cell failure and contributes to beta cell loss by mechanisms which are not yet clear. A better understanding of the process leading to beta cell failure is vital for the development of drugs capable of stopping the development of T2D.
MiRNAs are small RNA molecules that do not produce proteins themselves but are capable to reduce the rate at which other proteins (their "targets") are produced. MicroRNAs exist in beta cells that regulate important functions such as their capacity to produce and secrete insulin. Also, changes in the levels of certain miRNAs in beta cells are associated with the development of T2D.
We have recently made three important findings. Firstly, when mouse and human beta cells are exposed to high levels of glucose, their levels of the miRNA miR-125b (miR-125b-5p) go up. Secondly, the introduction of additional miR-125b in the beta cells of mice causes them to produce and secrete less insulin and develop diabetes. We have also observed that reducing the amount of miR-125b in human beta cells in culture improves their capacity to secrete insulin in response to glucose. Accordingly, we hypothesize that beta cell selective inhibition of miR-125b has the potential to protect beta cell function from hyperglycaemia. Thirdly, we have seen that high levels of miR-125b lead to the appearance of enlarged lysosomes while low levels of miR-125b lead to changes in mitochondria morphology and in the content of genes related to mitochondrial function. Lysosomes and mitochondria are subcellular organelles very important for the recycling of cellular components and waste and for energy production, respectively. Thus, we hypothesize that miR-125b regulates beta cell function by modulating lysosomal and/or mitochondrial function. Both processes are essential for adequate beta cell function and are altered in diabetes.
Additionally, we have demonstrated that miR-125b targets the cation-dependent lysosomal mannose-6-phosphate receptor (M6PR) which transports lysosomal enzymes to lysosomes for their adequate functioning. Nevertheless, the role of M6PR for lysosomal and secretory function in beta cells hasn't been studied.
Thus, the specific aims of this proposal are to determine:
1. Whether and how selective elimination/reduction of miR-125b in beta cells prevents T2D progression
2. The role of miR-125b in lysosomal and mitochondrial function
3. The function of M6PR in beta cells
To achieve these aims we will use a combination of
- Mice deleted for/overexpressing miR-125b selectively in beta cells. The use of mice is necessary since maintenance of glucose homeostasis requires interplay between all metabolic tissues and therefore these experiments need to be done in the context of the whole body.
- Donated human islets, modified to contain more or less miR-125b. The use of human samples is essential to ensure the translatability of our findings to the clinic.
- Mouse and human beta cell lines, modified to contain more or less miR-125b or M6PR, which allow to study biological processes in detail and reduces an unnecessary use of animals.
MiRNAs are novel candidates for drug targeting and our study will provide preclinical data on the potential of beta cell miR-125b inhibition for the treatment of T2D. It will also provide new fundamental insights into how beta cells work in health and disease, which, in the long term, could reveal new ways to treat diabetes.
Technical Summary
MiRNAs are small RNAs that silence gene expression, essential for endocrine function. We have shown that islet miR-125b levels correlate with BMI and are increased by high glucose via AMPK. MiR-125b deletion in human beta cells improves insulin secretion and, conversely, beta cell selective overexpression of miR-125b impairs glucose tolerance and insulin production and secretion in mice. MiR-125b targets lysosomal and mitochondrial proteins (including M6PR, a transporter of lysosomal hydrolases) and its modulation affects lysosomal and mitochondrial morphology.
Thus, we hypothesize that miR-125b regulates mitochondrial and lysosomal function and that beta cell selective inhibition of miR-125b will improve beta cell function and glycaemic outcomes. We will:
1-Test whether miR-125b inhibition in beta cells improves secretory function in vivo, genetically eliminating miR-125b from mouse beta cells, using novel miR-125b inhibitors targeting beta cells and generating "humanised" mice by transplanting human islets with reduced miR-125b levels into the mouse eye
2-Dissect the role of miR-125b in lysosomal and mitochondrial function and its contribution to glucose/AMPK-mediated regulation of these processes, using cell lines and islets with miR-125b gain/loss-of-function
3-Determine the role of M6PR and the impact of its regulation by miR-125 in beta cells, using CRISPR/Cas9 and lentiviral vectors in islets and cell lines
We will use conventional and state-of-the-art technologies, such as high-resolution microscopy and molecular sensors to functionally characterize these models.
This work will unravel the mechanism of action of miR-125b in beta cells and demonstrate its therapeutic value for T2D treatment. We will generate new insights into the regulation of lysosomal and mitochondrial processes, increasing the understanding of the mechanisms contributing to beta cell function and failure, key to develop better therapies for diabetes in the future.
Thus, we hypothesize that miR-125b regulates mitochondrial and lysosomal function and that beta cell selective inhibition of miR-125b will improve beta cell function and glycaemic outcomes. We will:
1-Test whether miR-125b inhibition in beta cells improves secretory function in vivo, genetically eliminating miR-125b from mouse beta cells, using novel miR-125b inhibitors targeting beta cells and generating "humanised" mice by transplanting human islets with reduced miR-125b levels into the mouse eye
2-Dissect the role of miR-125b in lysosomal and mitochondrial function and its contribution to glucose/AMPK-mediated regulation of these processes, using cell lines and islets with miR-125b gain/loss-of-function
3-Determine the role of M6PR and the impact of its regulation by miR-125 in beta cells, using CRISPR/Cas9 and lentiviral vectors in islets and cell lines
We will use conventional and state-of-the-art technologies, such as high-resolution microscopy and molecular sensors to functionally characterize these models.
This work will unravel the mechanism of action of miR-125b in beta cells and demonstrate its therapeutic value for T2D treatment. We will generate new insights into the regulation of lysosomal and mitochondrial processes, increasing the understanding of the mechanisms contributing to beta cell function and failure, key to develop better therapies for diabetes in the future.
Organisations
- Imperial College London (Lead Research Organisation, Project Partner)
- MRC London Institute of Medical Sciences (Collaboration)
- IMPERIAL COLLEGE LONDON (Collaboration)
- Biodonostia (Collaboration)
- KING'S COLLEGE LONDON (Collaboration)
- Cardiff University (Collaboration)
- Helmholtz Association of German Research Centres (Collaboration)
- Cardiff and Vale University Health Board (Collaboration)
- University of Bristol (Collaboration)
- University of Copenhagen (Project Partner)
- AstraZeneca (Project Partner)
- University of Bristol (Project Partner)
- AstraZeneca (Global) (Project Partner)
- UNIVERSITY COLLEGE LONDON (Project Partner)
- University of Strasbourg (Project Partner)
- University of Montreal (Project Partner)
Publications
Haberman N
(2024)
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells.
in FASEB journal : official publication of the Federation of American Societies for Experimental Biology
Haberman N
(2024)
Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells.
in bioRxiv : the preprint server for biology
Haberman N
(2024)
Widespread 3'UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites.
in BMC biology
Lopez-Noriega L
(2025)
Roles for the long non-coding RNA Pax6os1/PAX6-AS1 in pancreatic beta cell function.
in iScience
Rial SA
(2024)
14-3-3? regulates adipogenesis by modulating chromatin accessibility during the early stages of adipocyte differentiation.
in bioRxiv : the preprint server for biology
Sarwat S.
(2024)
Mitochondrial fission process 1 regulates glucose stimulated insulin secretion in pancreatic beta cells
in DIABETOLOGIA
| Title | GLP1Ragonist-conjugated-miR-125b inhibitors |
| Description | In collaboration with AZ, we have generated LNA inhibitors for miR-125b that are conjugated to a GLP1-R agonist for direct uptake by cells expressing GLP-1R (beta cells) |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2025 |
| Provided To Others? | No |
| Impact | We will be testing these inhibitords in vitro to then move onto the in vivo settings. |
| Title | InsCreMTFP1 KO |
| Description | Mouse with beta cell specific deletion of MTFP1, following breeding of MTFP1 floxed and InsCre mice |
| Type Of Material | Model of mechanisms or symptoms - mammalian in vivo |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | This will be available to study function of mtfp1 and mitochondria in beta cells |
| Title | MIR125B1 and MIR125B2 floxed mice |
| Description | We've generated mice with floxed alleles of the genes encoding the miRNA miR-125b, which allows cell -specific elimination of the funciton of this miRNA |
| Type Of Material | Model of mechanisms or symptoms - mammalian in vivo |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | It is allowing us to research the effect of miR-125b elimination in pancreatic beta cells, by breeding with the deleter strain Ins-Cr |
| Title | MTFP1 KO EndoCB-H3 cells |
| Description | Cell line (EndoC-BH3) with permanent reduction of MTFP1 expression generated by CRISPR/Cas9 |
| Type Of Material | Cell line |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | It has allowed us to determine MTFP1 function in insulin secretion and its mechanism on action. Results not yet published |
| Title | Viral vectors and particles for M6PR modulation |
| Description | Lentivirus enconding M6PR-targeting shRNAs and adenovirus encoding M6PR ORF to perform loss/gain of function experiments |
| Type Of Material | Biological samples |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | Allowing us to perform functional assays. Results not published yet |
| Title | Viral vectors and particles for MTFP1 modulation |
| Description | Lentivirus enconding MTFP1-targeting shRNAs and adenovirus encoding MTFP1 ORF to perform loss/gain of function experiments |
| Type Of Material | Biological samples |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | Allowing us to perform functional assays. Results not published yet |
| Description | Cas13 to impair miRNA-target interactions |
| Organisation | Biodonostia |
| Country | Spain |
| Sector | Public |
| PI Contribution | This partnership has been important to design a new project for the use of CRISPR-Cas13 to impair miR-125b-M6PR interaction. This was included in a project recently awarded by the DUK |
| Collaborator Contribution | My partner has sent plasmids encoding dCasRx and is also conceptually supporting the project |
| Impact | Awarded grant ton Role of M6PR in beta cells- DUK |
| Start Year | 2021 |
| Description | Functional characterization of iPSC-derived islets |
| Organisation | King's College London |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | I will be functionally characterizing iPSC-derived islets within a project awarded to collaborators by the Diabetes UK. I am a named collaborator on the grant. |
| Collaborator Contribution | Collaborators are generating iPSC cells following different treatments and have obtained a grant aimed to use them to improve T1D treatment options. |
| Impact | Grant to collaborators awarded |
| Start Year | 2023 |
| Description | Markers of pancreas transplant rejection |
| Organisation | Cardiff University |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We are assessing miRNA expression in plasma from individuals that are undergoing pancreas tansplant and/or rejection of the transplant. |
| Collaborator Contribution | Partners are obtaining patient samples for the analysis and/or analysing other markers such as circulagin DNA, etc |
| Impact | Not yet published |
| Start Year | 2023 |
| Description | Markers of pancreas transplant rejection |
| Organisation | Cardiff and Vale University Health Board |
| Country | United Kingdom |
| Sector | Public |
| PI Contribution | We are assessing miRNA expression in plasma from individuals that are undergoing pancreas tansplant and/or rejection of the transplant. |
| Collaborator Contribution | Partners are obtaining patient samples for the analysis and/or analysing other markers such as circulagin DNA, etc |
| Impact | Not yet published |
| Start Year | 2023 |
| Description | Markers of pancreas transplant rejection |
| Organisation | University of Bristol |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We are assessing miRNA expression in plasma from individuals that are undergoing pancreas tansplant and/or rejection of the transplant. |
| Collaborator Contribution | Partners are obtaining patient samples for the analysis and/or analysing other markers such as circulagin DNA, etc |
| Impact | Not yet published |
| Start Year | 2023 |
| Description | Mechanism of action of AMPK/LKB1 in beta cells |
| Organisation | Imperial College London |
| Department | Division of Diabetes, Endocrinology & Metabolism |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | My team has helped to decipher the mechanisms by which LKB1 controls gee expression in pancreatic islets, intelectually and performing experiments, as well as preparing a manuscript for publication |
| Collaborator Contribution | My collaborator has provided LKB1KO mice and provided intelectually input |
| Impact | Manuscript in preparation |
| Start Year | 2017 |
| Description | MicroRNA heterogeneity in pancreatic beta cells |
| Organisation | Helmholtz Association of German Research Centres |
| Department | Helmholtz Institute for Diabetes and obesity, Munich |
| Country | Germany |
| Sector | Academic/University |
| PI Contribution | We wrote two research grants with these collaborators, one of which (SMF-DUK) was awarded (see funding outcomes). I led the preparation of the proposal, will perform experiments proposed to determine miRNA function in single cells |
| Collaborator Contribution | Collaborator Prashant Srivastava at ICL (NHLI) will perform single cell computational analysis. He also co-wrote the awarded proposal as co_lead Collaborator Teresa Rodriguez-Calvo lab at Helmholtz will perform the in situ hibridization experiments proposed for the awarded grant. She also co-wrote the proposal as project co-applicant. Collaborator Rocio Sancho (Kings College London) contributed to revise the application and will bring her expertise in endocrine cells development. |
| Impact | This is a multidisciplinary collaboration, involving a inmunologist (T.R-C) , a computational biologist (P.S), a developmental biologist (R.S) and myself (islet and miRNA biologist). We were awarded a innovation project grant by the SMF-DUK |
| Start Year | 2024 |
| Description | MicroRNA heterogeneity in pancreatic beta cells |
| Organisation | Imperial College London |
| Department | National Heart & Lung Institute (NHLI) |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We wrote two research grants with these collaborators, one of which (SMF-DUK) was awarded (see funding outcomes). I led the preparation of the proposal, will perform experiments proposed to determine miRNA function in single cells |
| Collaborator Contribution | Collaborator Prashant Srivastava at ICL (NHLI) will perform single cell computational analysis. He also co-wrote the awarded proposal as co_lead Collaborator Teresa Rodriguez-Calvo lab at Helmholtz will perform the in situ hibridization experiments proposed for the awarded grant. She also co-wrote the proposal as project co-applicant. Collaborator Rocio Sancho (Kings College London) contributed to revise the application and will bring her expertise in endocrine cells development. |
| Impact | This is a multidisciplinary collaboration, involving a inmunologist (T.R-C) , a computational biologist (P.S), a developmental biologist (R.S) and myself (islet and miRNA biologist). We were awarded a innovation project grant by the SMF-DUK |
| Start Year | 2024 |
| Description | MicroRNA heterogeneity in pancreatic beta cells |
| Organisation | King's College London |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We wrote two research grants with these collaborators, one of which (SMF-DUK) was awarded (see funding outcomes). I led the preparation of the proposal, will perform experiments proposed to determine miRNA function in single cells |
| Collaborator Contribution | Collaborator Prashant Srivastava at ICL (NHLI) will perform single cell computational analysis. He also co-wrote the awarded proposal as co_lead Collaborator Teresa Rodriguez-Calvo lab at Helmholtz will perform the in situ hibridization experiments proposed for the awarded grant. She also co-wrote the proposal as project co-applicant. Collaborator Rocio Sancho (Kings College London) contributed to revise the application and will bring her expertise in endocrine cells development. |
| Impact | This is a multidisciplinary collaboration, involving a inmunologist (T.R-C) , a computational biologist (P.S), a developmental biologist (R.S) and myself (islet and miRNA biologist). We were awarded a innovation project grant by the SMF-DUK |
| Start Year | 2024 |
| Description | Significance and origin of CAPPED 3'UTR Fragments |
| Organisation | MRC London Institute of Medical Sciences |
| Country | United Kingdom |
| Sector | Public |
| PI Contribution | Hi have contributed with my expertise in miRNAs and intelectual input on the project. My team has also generated useful cell lines and perform a few experiments. |
| Collaborator Contribution | My collaborators, mainly Nejc Haberman and the PI of the group, Boris Lenhard, proposed the project and develop the computational analysis leading to the hypothesis and posterior analysis of data. Thus intellectual and experimental input |
| Impact | Paper in preparation |
| Start Year | 2019 |
| Description | An overview of type 2 diabetes and an introduction to a research project investigating potential targets to improve the treatment of type 2 diabetes |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | On 5 July 2024, we were invited by the Harrow Digital Inclusion and Diabetes Community Club to speak to members at one of their regular Friday morning meetings, which are held at the Harrow International Christian Centre (HICC). Most members are aged 60+ and include individuals who are either non-diabetic, prediabetic or living with type 2 diabetes. Prior to the session, a lay summary of Dr Martinez-Sanchez's research project and a pre-session questionnaire was shared with members. Naomi Asantewa-Sechereh (Imperial Patient Experience Research Centre) had a call with two members of the organising committee of the Harrow Digital Inclusion and Diabetes Community Club to coordinate how to collect member's responses to the pre-session questionnaire and to discuss the logistics of the first session. The member's responses to the pre-session questionnaire demonstrated that the lay summary was not understandable to several members and that there were other areas of type 2 diabetes that were of more interest to members. I used this feedback to tailor her talk, instead choosing to talk more widely about the cells that make insulin and what happens to them in people with type 2 diabetes, and why are team are researching them. |
| Year(s) Of Engagement Activity | 2024 |
| Description | Career talk Early Career Researchers Departamental Workshop |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Other audiences |
| Results and Impact | Grant/Fellowship writing workshop directed to postdoctoral researchers and early careers. Around 50 attendants. Sparked discussions aboout careers in academia Feedback was very positive, as participants estated that appreciated my perspective and my experience was usful to reflect on their own career progression options. |
| Year(s) Of Engagement Activity | 2024 |
| Description | Diabetes UK sponsors visit to lab |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Supporters |
| Results and Impact | Some major stakeholders and supporters of the Diabetes UK visited the lab and attended some research demonstrations and short talks by our team and others. |
| Year(s) Of Engagement Activity | 2024 |
| Description | Health Awareness and Research meeting for the Latinamerican community LA United. |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | This activity was organized by the Latinamerican community of Business owners (LA United) together with Imperial College London to increase health awareness in the Latin american community in the UK. My team was invited to hold a round table where we showcased our research on beta cells. We focused on why studying beta cells is important in the context of curing diabetes in the future. |
| Year(s) Of Engagement Activity | 2025 |
| Description | School visit to talk about being a scientist |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Schools |
| Results and Impact | Visited a school in London, reception classes, to talk about my job and what scientist do and why study how the body works is important. |
| Year(s) Of Engagement Activity | 2025 |
