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MICA: Deciphering the mechanism of action of miR-125b in beta cells and its therapeutic potential in Diabetes

Lead Research Organisation: Imperial College London
Department Name: Metabolism, Digestion and Reproduction

Abstract

Over 8.5% of the world's adult population suffer diabetes. If poorly treated, diabetes leads to very high blood sugar levels which worsen the disease and lead to complications such as kidney failure and blindness, shortening life expectancy by 10 years in the case of type 2 diabetes (T2D).
Pancreatic beta cells are in charge of secreting insulin in response to rises in blood sugar. Failure of beta cells to secrete enough insulin contributes to the development of diabetes. Importantly, the prevalence of high-blood sugar accelerates beta cell failure and contributes to beta cell loss by mechanisms which are not yet clear. A better understanding of the process leading to beta cell failure is vital for the development of drugs capable of stopping the development of T2D.

MiRNAs are small RNA molecules that do not produce proteins themselves but are capable to reduce the rate at which other proteins (their "targets") are produced. MicroRNAs exist in beta cells that regulate important functions such as their capacity to produce and secrete insulin. Also, changes in the levels of certain miRNAs in beta cells are associated with the development of T2D.

We have recently made three important findings. Firstly, when mouse and human beta cells are exposed to high levels of glucose, their levels of the miRNA miR-125b (miR-125b-5p) go up. Secondly, the introduction of additional miR-125b in the beta cells of mice causes them to produce and secrete less insulin and develop diabetes. We have also observed that reducing the amount of miR-125b in human beta cells in culture improves their capacity to secrete insulin in response to glucose. Accordingly, we hypothesize that beta cell selective inhibition of miR-125b has the potential to protect beta cell function from hyperglycaemia. Thirdly, we have seen that high levels of miR-125b lead to the appearance of enlarged lysosomes while low levels of miR-125b lead to changes in mitochondria morphology and in the content of genes related to mitochondrial function. Lysosomes and mitochondria are subcellular organelles very important for the recycling of cellular components and waste and for energy production, respectively. Thus, we hypothesize that miR-125b regulates beta cell function by modulating lysosomal and/or mitochondrial function. Both processes are essential for adequate beta cell function and are altered in diabetes.
Additionally, we have demonstrated that miR-125b targets the cation-dependent lysosomal mannose-6-phosphate receptor (M6PR) which transports lysosomal enzymes to lysosomes for their adequate functioning. Nevertheless, the role of M6PR for lysosomal and secretory function in beta cells hasn't been studied.

Thus, the specific aims of this proposal are to determine:
1. Whether and how selective elimination/reduction of miR-125b in beta cells prevents T2D progression
2. The role of miR-125b in lysosomal and mitochondrial function
3. The function of M6PR in beta cells

To achieve these aims we will use a combination of
- Mice deleted for/overexpressing miR-125b selectively in beta cells. The use of mice is necessary since maintenance of glucose homeostasis requires interplay between all metabolic tissues and therefore these experiments need to be done in the context of the whole body.
- Donated human islets, modified to contain more or less miR-125b. The use of human samples is essential to ensure the translatability of our findings to the clinic.
- Mouse and human beta cell lines, modified to contain more or less miR-125b or M6PR, which allow to study biological processes in detail and reduces an unnecessary use of animals.

MiRNAs are novel candidates for drug targeting and our study will provide preclinical data on the potential of beta cell miR-125b inhibition for the treatment of T2D. It will also provide new fundamental insights into how beta cells work in health and disease, which, in the long term, could reveal new ways to treat diabetes.

Technical Summary

MiRNAs are small RNAs that silence gene expression, essential for endocrine function. We have shown that islet miR-125b levels correlate with BMI and are increased by high glucose via AMPK. MiR-125b deletion in human beta cells improves insulin secretion and, conversely, beta cell selective overexpression of miR-125b impairs glucose tolerance and insulin production and secretion in mice. MiR-125b targets lysosomal and mitochondrial proteins (including M6PR, a transporter of lysosomal hydrolases) and its modulation affects lysosomal and mitochondrial morphology.
Thus, we hypothesize that miR-125b regulates mitochondrial and lysosomal function and that beta cell selective inhibition of miR-125b will improve beta cell function and glycaemic outcomes. We will:

1-Test whether miR-125b inhibition in beta cells improves secretory function in vivo, genetically eliminating miR-125b from mouse beta cells, using novel miR-125b inhibitors targeting beta cells and generating "humanised" mice by transplanting human islets with reduced miR-125b levels into the mouse eye

2-Dissect the role of miR-125b in lysosomal and mitochondrial function and its contribution to glucose/AMPK-mediated regulation of these processes, using cell lines and islets with miR-125b gain/loss-of-function

3-Determine the role of M6PR and the impact of its regulation by miR-125 in beta cells, using CRISPR/Cas9 and lentiviral vectors in islets and cell lines

We will use conventional and state-of-the-art technologies, such as high-resolution microscopy and molecular sensors to functionally characterize these models.

This work will unravel the mechanism of action of miR-125b in beta cells and demonstrate its therapeutic value for T2D treatment. We will generate new insights into the regulation of lysosomal and mitochondrial processes, increasing the understanding of the mechanisms contributing to beta cell function and failure, key to develop better therapies for diabetes in the future.

Publications

10 25 50
 
Title GLP1Ragonist-conjugated-miR-125b inhibitors 
Description In collaboration with AZ, we have generated LNA inhibitors for miR-125b that are conjugated to a GLP1-R agonist for direct uptake by cells expressing GLP-1R (beta cells) 
Type Of Material Technology assay or reagent 
Year Produced 2025 
Provided To Others? No  
Impact We will be testing these inhibitords in vitro to then move onto the in vivo settings. 
 
Title InsCreMTFP1 KO 
Description Mouse with beta cell specific deletion of MTFP1, following breeding of MTFP1 floxed and InsCre mice 
Type Of Material Model of mechanisms or symptoms - mammalian in vivo 
Year Produced 2024 
Provided To Others? No  
Impact This will be available to study function of mtfp1 and mitochondria in beta cells 
 
Title MIR125B1 and MIR125B2 floxed mice 
Description We've generated mice with floxed alleles of the genes encoding the miRNA miR-125b, which allows cell -specific elimination of the funciton of this miRNA 
Type Of Material Model of mechanisms or symptoms - mammalian in vivo 
Year Produced 2024 
Provided To Others? No  
Impact It is allowing us to research the effect of miR-125b elimination in pancreatic beta cells, by breeding with the deleter strain Ins-Cr 
 
Title MTFP1 KO EndoCB-H3 cells 
Description Cell line (EndoC-BH3) with permanent reduction of MTFP1 expression generated by CRISPR/Cas9 
Type Of Material Cell line 
Year Produced 2024 
Provided To Others? No  
Impact It has allowed us to determine MTFP1 function in insulin secretion and its mechanism on action. Results not yet published 
 
Title Viral vectors and particles for M6PR modulation 
Description Lentivirus enconding M6PR-targeting shRNAs and adenovirus encoding M6PR ORF to perform loss/gain of function experiments 
Type Of Material Biological samples 
Year Produced 2024 
Provided To Others? No  
Impact Allowing us to perform functional assays. Results not published yet 
 
Title Viral vectors and particles for MTFP1 modulation 
Description Lentivirus enconding MTFP1-targeting shRNAs and adenovirus encoding MTFP1 ORF to perform loss/gain of function experiments 
Type Of Material Biological samples 
Year Produced 2024 
Provided To Others? No  
Impact Allowing us to perform functional assays. Results not published yet 
 
Description Cas13 to impair miRNA-target interactions 
Organisation Biodonostia
Country Spain 
Sector Public 
PI Contribution This partnership has been important to design a new project for the use of CRISPR-Cas13 to impair miR-125b-M6PR interaction. This was included in a project recently awarded by the DUK
Collaborator Contribution My partner has sent plasmids encoding dCasRx and is also conceptually supporting the project
Impact Awarded grant ton Role of M6PR in beta cells- DUK
Start Year 2021
 
Description Functional characterization of iPSC-derived islets 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution I will be functionally characterizing iPSC-derived islets within a project awarded to collaborators by the Diabetes UK. I am a named collaborator on the grant.
Collaborator Contribution Collaborators are generating iPSC cells following different treatments and have obtained a grant aimed to use them to improve T1D treatment options.
Impact Grant to collaborators awarded
Start Year 2023
 
Description Markers of pancreas transplant rejection 
Organisation Cardiff University
Country United Kingdom 
Sector Academic/University 
PI Contribution We are assessing miRNA expression in plasma from individuals that are undergoing pancreas tansplant and/or rejection of the transplant.
Collaborator Contribution Partners are obtaining patient samples for the analysis and/or analysing other markers such as circulagin DNA, etc
Impact Not yet published
Start Year 2023
 
Description Markers of pancreas transplant rejection 
Organisation Cardiff and Vale University Health Board
Country United Kingdom 
Sector Public 
PI Contribution We are assessing miRNA expression in plasma from individuals that are undergoing pancreas tansplant and/or rejection of the transplant.
Collaborator Contribution Partners are obtaining patient samples for the analysis and/or analysing other markers such as circulagin DNA, etc
Impact Not yet published
Start Year 2023
 
Description Markers of pancreas transplant rejection 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution We are assessing miRNA expression in plasma from individuals that are undergoing pancreas tansplant and/or rejection of the transplant.
Collaborator Contribution Partners are obtaining patient samples for the analysis and/or analysing other markers such as circulagin DNA, etc
Impact Not yet published
Start Year 2023
 
Description Mechanism of action of AMPK/LKB1 in beta cells 
Organisation Imperial College London
Department Division of Diabetes, Endocrinology & Metabolism
Country United Kingdom 
Sector Academic/University 
PI Contribution My team has helped to decipher the mechanisms by which LKB1 controls gee expression in pancreatic islets, intelectually and performing experiments, as well as preparing a manuscript for publication
Collaborator Contribution My collaborator has provided LKB1KO mice and provided intelectually input
Impact Manuscript in preparation
Start Year 2017
 
Description MicroRNA heterogeneity in pancreatic beta cells 
Organisation Helmholtz Association of German Research Centres
Department Helmholtz Institute for Diabetes and obesity, Munich
Country Germany 
Sector Academic/University 
PI Contribution We wrote two research grants with these collaborators, one of which (SMF-DUK) was awarded (see funding outcomes). I led the preparation of the proposal, will perform experiments proposed to determine miRNA function in single cells
Collaborator Contribution Collaborator Prashant Srivastava at ICL (NHLI) will perform single cell computational analysis. He also co-wrote the awarded proposal as co_lead Collaborator Teresa Rodriguez-Calvo lab at Helmholtz will perform the in situ hibridization experiments proposed for the awarded grant. She also co-wrote the proposal as project co-applicant. Collaborator Rocio Sancho (Kings College London) contributed to revise the application and will bring her expertise in endocrine cells development.
Impact This is a multidisciplinary collaboration, involving a inmunologist (T.R-C) , a computational biologist (P.S), a developmental biologist (R.S) and myself (islet and miRNA biologist). We were awarded a innovation project grant by the SMF-DUK
Start Year 2024
 
Description MicroRNA heterogeneity in pancreatic beta cells 
Organisation Imperial College London
Department National Heart & Lung Institute (NHLI)
Country United Kingdom 
Sector Academic/University 
PI Contribution We wrote two research grants with these collaborators, one of which (SMF-DUK) was awarded (see funding outcomes). I led the preparation of the proposal, will perform experiments proposed to determine miRNA function in single cells
Collaborator Contribution Collaborator Prashant Srivastava at ICL (NHLI) will perform single cell computational analysis. He also co-wrote the awarded proposal as co_lead Collaborator Teresa Rodriguez-Calvo lab at Helmholtz will perform the in situ hibridization experiments proposed for the awarded grant. She also co-wrote the proposal as project co-applicant. Collaborator Rocio Sancho (Kings College London) contributed to revise the application and will bring her expertise in endocrine cells development.
Impact This is a multidisciplinary collaboration, involving a inmunologist (T.R-C) , a computational biologist (P.S), a developmental biologist (R.S) and myself (islet and miRNA biologist). We were awarded a innovation project grant by the SMF-DUK
Start Year 2024
 
Description MicroRNA heterogeneity in pancreatic beta cells 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution We wrote two research grants with these collaborators, one of which (SMF-DUK) was awarded (see funding outcomes). I led the preparation of the proposal, will perform experiments proposed to determine miRNA function in single cells
Collaborator Contribution Collaborator Prashant Srivastava at ICL (NHLI) will perform single cell computational analysis. He also co-wrote the awarded proposal as co_lead Collaborator Teresa Rodriguez-Calvo lab at Helmholtz will perform the in situ hibridization experiments proposed for the awarded grant. She also co-wrote the proposal as project co-applicant. Collaborator Rocio Sancho (Kings College London) contributed to revise the application and will bring her expertise in endocrine cells development.
Impact This is a multidisciplinary collaboration, involving a inmunologist (T.R-C) , a computational biologist (P.S), a developmental biologist (R.S) and myself (islet and miRNA biologist). We were awarded a innovation project grant by the SMF-DUK
Start Year 2024
 
Description Significance and origin of CAPPED 3'UTR Fragments 
Organisation MRC London Institute of Medical Sciences
Country United Kingdom 
Sector Public 
PI Contribution Hi have contributed with my expertise in miRNAs and intelectual input on the project. My team has also generated useful cell lines and perform a few experiments.
Collaborator Contribution My collaborators, mainly Nejc Haberman and the PI of the group, Boris Lenhard, proposed the project and develop the computational analysis leading to the hypothesis and posterior analysis of data. Thus intellectual and experimental input
Impact Paper in preparation
Start Year 2019
 
Description An overview of type 2 diabetes and an introduction to a research project investigating potential targets to improve the treatment of type 2 diabetes 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact On 5 July 2024, we were invited by the Harrow Digital Inclusion and Diabetes Community Club to speak to members at one of their regular Friday morning meetings, which are held at the Harrow International Christian Centre (HICC). Most members are aged 60+ and include individuals who are either non-diabetic, prediabetic or living with type 2 diabetes.

Prior to the session, a lay summary of Dr Martinez-Sanchez's research project and a pre-session questionnaire was shared with members. Naomi Asantewa-Sechereh (Imperial Patient Experience Research Centre) had a call with two members of the organising committee of the Harrow Digital Inclusion and Diabetes Community Club to coordinate how to collect member's responses to the pre-session questionnaire and to discuss the logistics of the first session.

The member's responses to the pre-session questionnaire demonstrated that the lay summary was not understandable to several members and that there were other areas of type 2 diabetes that were of more interest to members. I used this feedback to tailor her talk, instead choosing to talk more widely about the cells that make insulin and what happens to them in people with type 2 diabetes, and why are team are researching them.
Year(s) Of Engagement Activity 2024
 
Description Career talk Early Career Researchers Departamental Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Other audiences
Results and Impact Grant/Fellowship writing workshop directed to postdoctoral researchers and early careers. Around 50 attendants. Sparked discussions aboout careers in academia
Feedback was very positive, as participants estated that appreciated my perspective and my experience was usful to reflect on their own career progression options.
Year(s) Of Engagement Activity 2024
 
Description Diabetes UK sponsors visit to lab 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Supporters
Results and Impact Some major stakeholders and supporters of the Diabetes UK visited the lab and attended some research demonstrations and short talks by our team and others.
Year(s) Of Engagement Activity 2024
 
Description Health Awareness and Research meeting for the Latinamerican community LA United. 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact This activity was organized by the Latinamerican community of Business owners (LA United) together with Imperial College London to increase health awareness in the Latin american community in the UK. My team was invited to hold a round table where we showcased our research on beta cells. We focused on why studying beta cells is important in the context of curing diabetes in the future.
Year(s) Of Engagement Activity 2025
 
Description School visit to talk about being a scientist 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Visited a school in London, reception classes, to talk about my job and what scientist do and why study how the body works is important.
Year(s) Of Engagement Activity 2025