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Spatial Cholesterol Metabolism: A Mass Spectrometer for Better Diagnosis and Understanding of Disease

Lead Research Organisation: Swansea University
Department Name: Institute of Life Science Medical School

Abstract

Disturbed cholesterol metabolism (including its synthesis and transport) is linked to many disease states including neurodegenerative, neurodevelopmental and metal health disorders, metabolic disease and microbial infections. In addition, many rare diseases show features of disturbed cholesterol metabolism. Research in many groups in the UK embraces cholesterol metabolism, but there are few laboratories which specifically focus on the analysis of the myriad of intermediates involved in pathways transforming cholesterol to bile acids and steroids. The Biomedical Mass Spectrometry Laboratory in Swansea University Medical School is one such laboratory and with new mass spectrometry (MS) equipment from the MRC Mid-Range Equipment Fund will provide a resource for researcher in the UK to access specialist MS equipment, expert knowledge in sample preparation, data analysis and its interpretation.

MS represents the primary technology in the study of cholesterol metabolism (cholesterolomics) and when combined with liquid chromatography (LC) is suitable for the unbiased identification and quantification of the greatest number of metabolites in a complex mixture. Security of metabolite identification is provided by orthogonal data including retention time, accurate mass measurement, and fragmentation patterns, preferably, in the case of cholesterol metabolites, multistage fragmentation (MSn). A recent addition to MS-tool box is MS-imaging (MSI) adding further to the available bioimaging technologies.

The current proposal is for a high-resolution MS instrument with MSn and UVPD capabilities which can be combined with existing interfaces for LC-MS, high spatial-resolution AP-MALDI-MSI and high sensitivity LESAplus-LC-MSI already in Swansea. The AP-MALDI source offers <10 micrometer spatial resolution while LESAplus-LC-MSI provides isomer separation and with pg/mg sensitivity. The instrument will be a resource for MRC-remit research in the UK. The new instrument will underpin scientific research in several key strategic priority areas for MRC which involve cholesterol metabolism, including (1) neuroscience and mental health; (2) infection and immunity; (3) molecular medicine; (4) clinical and translational research; and (5) global health.

Technical Summary

There is considerable research interest in the involvement of cholesterol metabolism (including its synthesis and transport) in differing disease states. One way to learn more about such diseases is to monitor how cholesterol metabolism differs between patients and healthy people (and during disease progression) or between animal/cell models and wild type. This can be achieved by mass spectrometry analysis of fluids and tissue sample. By using mass spectrometry imaging (MSI) defined metabolites can be quantitatively visualised from tissue slices, revealing the metabolic differences between e.g. lesions and healthy tissue. Provision of a new mass spectrometer at Swansea, which is an acknowledged centre for the analysis of the cholesterol metabolic pathway, having developed EADSA technology (US patent US9851368B2), will provide a UK resource for biomedical scientists whose research requires an investigation of cholesterol metabolism.

The new instrument will be capable of fluid analysis and with already existing equipment in Swansea, mass spectrometry imaging (MSI). To maximize the security of metabolite identification the instrument will be able to record high-resolution (500,000) accurate mass (<1ppm) spectra and will be able to generate MSn fragmentation trees using different modes of fragmentation, i.e. quadrupole-like, ion-trap-like and UVPD. We have found MSn to be particularly important for the structural characterisation of isomeric oxysterols and bile acid precursors, while UVPD has been shown to be able to locate double bond positions in sterol esters. The instrument will support research in the MRC strategic priority areas including neuroscience and mental health; infection and immunity; molecular medicine; clinical and translational research; and global health. The results generated will help define biomarker panels for the definition and monitoring of the progression of disease and assist in the development of therapy.

Publications

10 25 50
 
Description This award was for mass spectrometry equipment delivered to Swansea less than 12 months ago. The award has enabled us to optimize our methodology to allow the detection of almost all cholesterol metabolites in a single analysis. This is being utilized in new collaborations with Sheffield Children' Hospital and the University Hospital of Wales and existing collaborations with the St Mary's Hospital in Manchester, the Wellcome Centre for Human Genetics at the University of Oxford, Oxford Centre for Diabetes Endocrinology and Metabolism, the Center of Neurology and Hertie-Institute for Clinical Brain Research in Tubingen and Karolinska Institutet in Sweden. The award has also allowed us to develop closer links with the pharmaceutical industry and a small startup company.
Exploitation Route Cholesterol metabolism is an area of great interest with regard to health and disease. The methods we are exploiting using the instrument funded by this award are opening new avenues for diagnosis in the NHS and providing new directions for exploitation by the pharmaceutical industry.
Sectors Healthcare

Pharmaceuticals and Medical Biotechnology

 
Description Department of Health workshop on non-genetic conditions
Geographic Reach National 
Policy Influence Type Contribution to a national consultation/review
 
Description NHS Wales Rare Diseases Implementation Group
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
URL https://executive.nhs.wales/functions/networks-and-planning/rare-diseases/rdig-documents/progress-re...
 
Description Wales Rare Diseases Implementation Network 2025
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
 
Description Advanced Neurotherapies Centre
Amount £2,856,309 (GBP)
Funding ID N/A 
Organisation Health and Care Research Wales 
Sector Public
Country United Kingdom
Start 03/2025 
End 04/2030
 
Description Cholesterol precursor signature and evaluation of biomarker potential in HD biofluids
Amount £149,634 (GBP)
Funding ID CHDI_SwanseaUniv_Griffiths_2024_RecID_A-19668 
Organisation CHDI Foundation 
Sector Charity/Non Profit
Country United States
Start 12/2024 
End 05/2026
 
Description Sterol biomarkers for amyotrophic lateral sclerosis
Amount £318,758 (GBP)
Funding ID MR/Z505730/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 11/2024 
End 04/2026
 
Description Advanced Neurotherapies Centre 
Organisation University Hospital of Wales
Country United Kingdom 
Sector Hospitals 
PI Contribution We are providing expertise in lipidomic analysis.
Collaborator Contribution Our collaborators are providing patient samples.
Impact Successful grant application to Health Care Research Wales
Start Year 2024
 
Description Bile Acid Ring Trial 
Organisation National University of Singapore
Country Singapore 
Sector Academic/University 
PI Contribution We are one of a number of groups world wide providing bile acid measurement on a standard reference material.
Collaborator Contribution We are one of a number of groups world wide providing bile acid measurement on a standard reference material. Commercial partners are providing authentic standards free of charge.
Impact An expert protocol has been developed for bile acid analysis in human plasma.
Start Year 2020
 
Description Bradford Royal Infirmary 
Organisation Bradford Royal Infirmary
Country United Kingdom 
Sector Hospitals 
PI Contribution Analyze samples from patients suffering from rare disease to monitor response to therapy.
Collaborator Contribution Provide samples from patients suffering from rare disease.
Impact Our data is informing on individual patient treatment. This is a multidisciplinary collaboration between clinicians and analytical chemists.
Start Year 2024
 
Description Cardiff University & UHW 
Organisation University Hospital of Wales
Country United Kingdom 
Sector Hospitals 
PI Contribution We have provided expertise, intellectual input and access to equipment to assist in the diagnosis of rare diseases.
Collaborator Contribution Our collaborators have provided access to appropriate samples and clinical expertise.
Impact We have assisted in patient diagnosis where genomic data was equivocal. Our data is informing on patient treatment.
Start Year 2023
 
Description Hereditary Spastic Paraplegia 
Organisation Eberhard Karls University of Tübingen
Department Centre of Neurology and Hertie-Institute for Clinical Brain Research
Country Germany 
Sector Academic/University 
PI Contribution Expertise in oxysterol and sterol analysis.
Collaborator Contribution Hepatocyte and cortical neuron differentiation from iPS cells. Clinical samples from patients with in born errors of metabolism
Impact doi: 10.1172/JCI68506 doi.org/10.1016/j.aca.2021.338259 Analytical science and medicine
Start Year 2014
 
Description Manchester: Collaboration on inborn errors of metabolism 
Organisation University of Manchester
Department Centre for Genomic Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution Analysis of plasma and urine samples in the study of inborn errors of cholesterol biosynthesis and metabolism.
Collaborator Contribution Provision of samples for the study of inborn errors of cholesterol biosynthesis and metabolism.
Impact doi: 10.1016/j.freeradbiomed.2019.04.020 doi: 10.1194/jlr.D083246 doi: 10.1016/j.jsbmb.2020.105794 doi: 10.1016/j.jsbmb.2016.03.018 doi: 10.1373/clinchem.2014.231332 doi: 10.1172/JCI68506 doi: 10.1016/j.freeradbiomed.2012.07.027 Multidisciplinary, medicine and analytical science.
Start Year 2012
 
Description Microsample Ring Trial 
Organisation University of Turku
Country Finland 
Sector Academic/University 
PI Contribution We are participating in a European ring trial testing the effectiveness of devises for microsampling of blood to be used in clinical lipidomics.
Collaborator Contribution Our partners are organizing the ring trial and providing the microsampling devices.
Impact An expert protocol has been prepared for to evaluate blood sampling using microsampling device for use in clinical lipidomics.
Start Year 2024
 
Description Motor Neuron Disease 
Organisation University of Oxford
Department Nuffield Department of Clinical Neurosciences
Country United Kingdom 
Sector Academic/University 
PI Contribution Expertise in sterol and oxysterol analysis
Collaborator Contribution Expertise in motor neuron disease clinical pathology. Supported successful MRC grant application MR/Z505730/1 by providing patient samples.
Impact doi: 10.1194/jlr.P071639 WO2018007803A1
Start Year 2014
 
Description Oxford Centre for Diabetes, Endocrinology & Metabolism 
Organisation University of Oxford
Department Oxford Hub
Country United Kingdom 
Sector Academic/University 
PI Contribution Expertise in the analysis of oxysterols
Collaborator Contribution Provision of valuable biological material
Impact Our data is informing on patient treatment.
Start Year 2023
 
Description SHEFFIELD CHILDREN'S NHS FOUNDATION TRUST 
Organisation Sheffield Children's NHS Foundation Trust
Country United Kingdom 
Sector Public 
PI Contribution Collaboration to facilitate the diagnosis of rare disease
Collaborator Contribution Facilitate the collection of relevant samples, provide background information and clinical information.
Impact The collaboration has assisted in clinical diagnosis where genetics were equivocal. Our data is informing patient treatment.
Start Year 2023
 
Description University of Iowa 
Organisation University of Iowa
Country United States 
Sector Academic/University 
PI Contribution We generated biomarker data from Huntington Disease patient samples.
Collaborator Contribution Our collaborator performed detailed statistical analysis. The more detailed statistical analysis is currently being performed
Impact Multidisciplinary involving analytical scientists and clinicians. https://chdifoundation.org/2023-conference/#griffiths
Start Year 2023
 
Description Wellcome Centre for Human Genetics 
Organisation University of Oxford
Department Oxford Hub
Country United Kingdom 
Sector Academic/University 
PI Contribution We are performing sterol analysis to clarify the biochemistry behind rare mutations in human and in a mouse model.
Collaborator Contribution Oxford are providing biological material.
Impact Grant application.
Start Year 2022
 
Description Cardiff Huntington's Disease Centre Public Engagement Event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Patients, carers and/or patient groups
Results and Impact Presentation to the Cardiff Huntington's Disease Centre Public Engagement Event. Great interest from the patients and carers about the work we are doing to support future clinical trials.
Year(s) Of Engagement Activity 2023
 
Description Cardiff Huntington's Disease Centre Public Engagement Event 2024 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Patients, carers and/or patient groups
Results and Impact Describe current work to find a biomarker for the progression of Huntington's disease to patient carers and patient groups.
Year(s) Of Engagement Activity 2024
 
Description DHSC 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presentation made to DHSC workshop on non-genetic conditions and how to address some of the barriers to improved outcomes and experience.
Year(s) Of Engagement Activity 2023
 
Description Festival of Genomics & Biodata London 2025 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact More than 700 people attended the Festival of Genomics 2025, Griffiths gave a talk and chaired a session on the The Epigenetics and Emerging Omics Stage. There was considerable feedback from patients, carers and/or patient groups.
Year(s) Of Engagement Activity 2025
URL https://festivalofgenomics.com/london/en/page/2025-homepage?utm_campaign=Festival%20of%20Genomics%20...
 
Description NHS WALES RDID 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Invited presentation to NHS Wales Rare Diseases Implementation Group. The presentation made the group aware of the potential of metabolomics/lipidomics for rare disease diagnosis.
Year(s) Of Engagement Activity 2023
 
Description Public Virtual Genomics Cafe 2025 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact People with rare diseases, their carers and advocates attended the talk, there were many questions about diagnosing rare disease faster.
Year(s) Of Engagement Activity 2024
 
Description Welsh Government Visit 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Policymakers/politicians
Results and Impact Eluned Morgan AS/MS, Minister for Health and Social Services Welsh Government visited our laboratories to learn more about how metabolomics/lipidomics can be used in the diagnosis of rare diseases.
Year(s) Of Engagement Activity 2023
URL https://www.swansea.ac.uk/press-office/news-events/news/2023/12/swansea-university-opens-specialist-...