Does gene flow between species play a role in island adaptive radiations?
Lead Research Organisation:
University of Oxford
Department Name: Plant Sciences
Abstract
The extremely fast rate of phenotypic and ecological adaptation of species during 'explosive' adaptive radiations on islands remains one of the most intriguing evolutionary phenomena. Low genetic diversity of island populations may present an obstacle for fast adaptive changes, as natural selection needs genetic variation from which to select. Hybridisation of closely related species and interspecific gene flow may provide the genetic variation needed for natural selection. Although multiple cases of interspecific hybridisation are known, there is little evidence that it may play a role in adaptive evolution. We will use the Hawaiian endemic plant genus Schiedea (Caryophyllaceae) to infer the role of interspecific gene flow in adaptive radiation. This genus presents one of the most impressive recent adaptive radiations in plants, as it has evolved very diverse morphological forms (ranging from vines to perennial herbes and woody bushes) and colonised a wide range of ecological niches in just a few million years. To assess the role of gene flow between the species during adaptive radiation in Schiedea we will (i) estimate what proportion of genes show evidence for interspecific introgression, and (ii) test whether positive selection could have caused the spread of genes across several species. The spread of a positively selected allele across several species should distort the phylogeny of that gene, making it incompatible with the phylogenies of other genes not affected by interspecific introgression. We will estimate the proportion of genes with distorted phylogenies in genus Schiedea and will test whether the distortion could have been caused by the spread of advantageous alleles across several species.
Organisations
Publications
Dixon CJ
(2011)
Gene flow and species cohesion following the spread of Schiedea globosa (Caryophyllaceae) across the Hawaiian Islands.
in Journal of evolutionary biology
Filatov DA
(2009)
Processing and population genetic analysis of multigenic datasets with ProSeq3 software.
in Bioinformatics (Oxford, England)
Hay AS
(2014)
Cardamine hirsuta: a versatile genetic system for comparative studies.
in The Plant journal : for cell and molecular biology
Kapralov M
(2009)
Evolution of Genome size in Hawaiian Endemic Genus Schiedea (Caryophyllaceae)
in Tropical Plant Biology
Kapralov MV
(2013)
Molecular adaptation during a rapid adaptive radiation.
in Molecular biology and evolution
Muir G
(2007)
A selective sweep in the chloroplast DNA of dioecious silene (section Elisanthe).
in Genetics
Nevado B
(2016)
Widespread adaptive evolution during repeated evolutionary radiations in New World lupins.
in Nature communications
Piazza P
(2010)
Arabidopsis thaliana leaf form evolved via loss of KNOX expression in leaves in association with a selective sweep.
in Current biology : CB
Rautenberg A
(2008)
Conflicting phylogenetic signals in the SlX1/Y1 gene in Silene.
in BMC evolutionary biology
Description | The project aimed to study the role of interspecific gene flow in adaptation and speciation, using Hawaiian endemic genus Schiedea as a model. We met all of the original objectives and went significantly further than planned originally. In particular, although it was not originally planned, we used next generation sequencing to obtain a wider set of cDNA sequences for Schiedea globosa, which was crucial for isolation of homologous genes with known function from over 20 Schiedea species. The sequenced cDNAs comprise a valuable molecular resource for further work in this interesting endemic genus (Kapralov, Stift, Filatov 2009 doi:10.1007/s12042-009-9029-2). We also analysed gene flow both at the inter- and intra-species levels, which added a new dimension to the project and lead to two extra papers (Gossmann et al. 2010 doi:10.1093/molbev/msq079; Dixon, Kapralov, Filatov 2011 doi:10.1111/j.1420-9101.2010.02128.x [featured on the issue cover]). Furthermore, in addition to valuable data and publications described above we released a major update for the DNA sequence processing and analysis software that significantly simplifies handling of large multigenic datasets (Filatov 2009 10.1093/bioinformatics/btp572). |