Knowledge Transfer -Impacts of inbreeding on the responses to pharmaceuticals and fitness consequences in fish - a molecular approach

Lead Research Organisation: University of Exeter
Department Name: Biosciences

Abstract

Pharmaceuticals in the environment potentially have wide reaching deleterious impacts on wildlife and possibly humans, and are at the top of the Environment Agency's agenda for environmental pollution. Population level declines in wildlife have resulted from exposure to pharmaceuticals (e.g. diclofenac in vultures in Asia). Furthermore, some reproductive disorders associated in humans are now a major health issue and parallel those effects seen in wildlife that have been associated with exposure to environmental chemicals, including pharmaceuticals. The UK holds a strong lead in the field of pharmaceuticals in the aquatic environment and the applicants have contributed to the unfolding explanation of how some such contaminants interfere with normal reproductive activity in fish. . Information on interactive effects of inbreeding and pollutant exposure is extremely limited and essentially nothing is known for pharmaceuticals, which is surprising given that inbred strains of animals are used most commonly for laboratory testing of chemicals, including pharmaceuticals. This project will provide an understanding of the vulnerability or resistance of inbred populations of fish for exposure to the pharmaceutical,ketoconazole (a synthetic antifungal drug employed as an agricultural pesticides and clinically to prevent and treat skin and fungal infections), as a representative of a group of widely used group of fungicides. The use of genome-wide approaches (gene arrays) will enable us to dissect out gene expression networks most intimately associated with physiological stress for exposure to this pharmaceutical. The data from the project will further provide insights into the critical determinants of vulnerability of fish to a pharmaceutical of importance to human health. The data on the comparative responses to ketoconazole in inbred and outbred populations and impacts on breeding dynamics will also be highly informative for ecological and environmental risk assessment. This proposal will thus provide new information on gene-environment interactions for chemical exposure effects in fish. The project is also likely to deliver a more informative set of biological (molecular) effects tools upon which to base environmental impact and health assessments for ketoconazole and other allied fungicides. This work will provide substantive information on the health impacts of ketoconazole in the natural environment for the better protection of our aquatic resources and biodiversity and will contribute more widely to environmental impact assessments and will thus be of very wide interest to the government regulatory bodies, environment protection groups, industry and the wider public. A key element of the project is an enhancement in the partnership between academia (University of Exeter) and an end-user (Astrazeneca). This partnership will facilitate the uptake of genetic and genomic methods for chemical hazard identification (and developed through NERC funded science) into the pharmaceutical industry. It will further facilitate an enhanced understanding in academia of the practical research needs of the chemical/pharmaceutical industry.

Publications

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Brown AR (2015) Climate change and pollution speed declines in zebrafish populations. in Proceedings of the National Academy of Sciences of the United States of America

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Brown AR (2009) Genetic variation, inbreeding and chemical exposure--combined effects in wildlife and critical considerations for ecotoxicology. in Philosophical transactions of the Royal Society of London. Series B, Biological sciences

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Hogstrand, Christer; Kille, Pete (2008) Comparative Toxicogenomics

 
Description What have you discovered or developed through the research funded on this grant? Please explain for a non-specialist audience.

We undertook to collect zebrafish from wild populations in Bangladesh to investigate whether their responses to chemical challenge were comparable with zebrafish that have been maintained in the laboratory for many generations (and were inbred) that are used widely for standardised OECD tests.

The studies n included making assessment on the interactive effects of the fish genetics (inbred versus outbred lines of zebrafish) and an endocrine disrupting chemical (clotrimazole) on sexual development and breeding. Clotrimazole affects an enzyme called aromatase that is involved with the conversion of testosterone to oestrogen and is thus fundamental in the process of sexual differentiation in fish (reinforcing the feminised phenotype).

We show that there were differences in responses (sensitivity for effect) when considering the genetics of the zebrafish for chemical exposure and this has implications when considering the use of zebrafish lines in standardised regulatory chemical testing. Furthermore, the research identified that the timings differ for gonadal sexual differentiation for inbred versus outbred zebrafish with direct implications for use of an established OECD test guideline - where gonadal sex is a key endpoint for chemical effects assessments. The research undertaken highlights the need to better reporting on the genetics of fish strains/lines used for chemical testing (and indeed research more generally) that would more accurate comparisons for research findings between different laboratories adopting different fish strains/lines.

The research undertaken in this project has been disseminated widely through conferences and workshops to relevant stakeholders and been featured in three full primary data research papers:

Brown AR, Bickley LK, Le Page G, Hosken D, Paull,GC , Hamilton PB, Owen SF, Robinson,J., Sharpe AD and Tyler CR* (2011). Are toxicological responses in laboratory (inbred) zebrafish representative of those in outbred (wild) populations? - a case study with an endocrine disrupting chemical. Environmental Science and Technology 45(9):4166-4172

A Ross Brown , Lisa K Bickley, Thomas Ryan, Greg C Paull , Patrick B Hamilton, Stewart F
Owen, Alan D Sharpe and Charles R Tyler* (2012). Differences in sexual development in
inbred and outbred zebrafish (Danio rerio) and implications for chemical testing. Aquatic
Toxicology 112-113, 27-38.

Bickley LK, Brown AR, Le Page G, Hosken D, Paull,GC , Hamilton PB, Owen SF, Wilga J,
Hetheridge MJ, Sharpe AD and Tyler CR (2012). Interactive effects of inbreeding and
endocrine disruption on reproduction in a model laboratory fish. Evolutionary Applications.
6: 279-289

The research undertaken has also resulted in the production of two review paper papers to further highlight some of the critical issues identified during this research:

Brown, R.,Hosken,D., Balloux, F., Bickley, L.L., LePage, G. Owen S., Hetheridge M Tyler, C.R.* (2009). Genetic variation, inbreeding and chemical exposure - combined effects in wildlife and critical considerations for ecotoxicology. Phil Trans Royal Soc. 364, 3377-3390

Brown A R, Gunnarsson L M, Kristiansson E, Tyler C R (2014). Evolutionary, Ecological, and Life History Considerations in the Variation of Susceptibility to Pharmaceuticals in Fish. Phil Trans Royal Soc. 369 1656 - 20130576.

This work has furthermore lead to an analysis (ongoing) that is addressing the possible implications for fish populations of exposure to clotrimazole, together with changes in climate (temperature elevation) and inbreeding depression.
Exploitation Route see impact
Sectors Chemicals,Communities and Social Services/Policy,Education,Environment,Government, Democracy and Justice,Pharmaceuticals and Medical Biotechnology

 
Description A major impact of this research project was the knowledge transfer to Industry (AstraZeneca) from Exeter on the use and application of a wide range of molecular tools and techniques, including DNA extraction techniques, q RT-PCR, and DNA microsatellites for their application in (eco)toxicology. Equally from this partnership Exeter gained an enhanced understanding of end user needs for the chemical/pharmaceutical industry, and access to world class chemical exposure and analysis facilities. Exchanges of researchers (Ross Brown and Lisa Bickley) provided the main conduit for transfer of information between the collaborating laboratories. Reciprocal placements enabled these researchers to gain complimentary skills sets and understanding of the different (academic vs industry) environments. Ross Brown subsequently registers (and duly obtained) his PhD from Exeter. Wider links were gained for research and exchange of personnel through this research grant, leading to further grants, PhD studentship and training. This grant was important in forging an AstraZeneca -University of Exeter partnership that secured a DTi Knowledge Transfer Project to develop further the application of molecular tools in ecotox testing and significantly, recently (2014) resulted in a £1.3M AZ funded research and development project to Exeter. This project produced zebrafish lines with improved genetic variation that were supplied to AstraZeneca for their chemical testing programmes. In the collaborative research project these lines were used investigate to what extent chemical exposures in inbred fish (as held for most testing labs) can be used to inform on effects for wild ( out-bred fish), with significant findings and questions for standardised chemical testing. This work from this project has resulted in a series of high impact research papers, international conferences presentations and further research partnerships. The results of this work made a significant impact on the general public and environmental community, with Brown et al., 2015. PNAS doi: 10.1073/pnas.1416269112 prompting several cover stories and editorials in 2015 (reported on previously) and subsequently in 2016: • Atlas of Science (14 March 2016). https://atlasofscience.org/climate-change-may-add-significantly-to-the-impacts-of-pollution-and-habitat-loss-on-fish-populations/ Online impact of PNAS paper: Altmetric Score: 39 Total downloads: Abstract = 9585 Manuscript = 1483 PDF = 6972 (Article received 5704 hits on the abstract and 1000 downloads in the first month) We have informed the UK (e.g. Environment Agency and DEFRA), US and Japanese governments, European Union, environment protection groups, Industry and the wider public (e.g. via the Royal Society, Zoological Society London, local conservations groups) on this work. Information has been exchanged further through is existing NERC Knowledge Transfer Networks on contaminants in the aquatic environment that involve conferences and workshops which are attended by academics, regulators and industry as well as experienced researchers and research students. We have also been active in disseminating our research work to Schools, and higher education programmes, principally through University Open Days and International University seminars.
First Year Of Impact 2015
Sector Chemicals,Communities and Social Services/Policy,Education,Environment,Government, Democracy and Justice,Pharmaceuticals and Medical Biotechnology
Impact Types Cultural,Societal,Economic

 
Description AstraZeneca - £1.3m
Amount £1,300,000 (GBP)
Organisation AstraZeneca 
Sector Private
Country United Kingdom
Start  
End 02/2016
 
Description Collaborative training parntership with AstraZeneca and University of Glasgow
Amount £1,000,000 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 11/2016 
End 10/2019
 
Description Syngenta Industry Case studentship
Amount £80,000 (GBP)
Organisation Syngenta International AG 
Sector Private
Country Switzerland
Start  
 
Description AstraZenenca - data, staff training, papers 
Organisation AstraZeneca
Country United Kingdom 
Sector Private 
PI Contribution Provision of data on chemical effects analysis in fish and other animals Training of AZ staff in molecular methods Development of specific test methods Co-authored research papers Shared research programmes
Collaborator Contribution Finance Access to research facilities Support for grant applications Training of Exeter staff in GLP and industry environment (secondments) Shared research programmes
Impact New test methods for chemicals Strategic partnership Co-authored research papers CASE partnership on PhD projects
 
Description BASF 
Organisation BASF
Country Germany 
Sector Private 
PI Contribution Provision of data on nanopoymner effects analysis in fish and other animals Development of specific test methods Co-authored research paper Shared research programmes
Collaborator Contribution Funding
Impact Research paper Research training Provision of specific test materials ( from BASF) for testing
Start Year 2012
 
Description CEFAS 
Organisation Centre For Environment, Fisheries And Aquaculture Science
Country United Kingdom 
Sector Public 
PI Contribution Provision of data on chemical effects analysis in fish and other animals Development of specific test methods Co-authored research papers Shared research programmes Stategic partnership
Collaborator Contribution Funding CASE partner on PhD studentships Shared research programmes Stategic partnership
Impact PhD graduates Co-authord research papers Co-authored government reports
Start Year 2011
 
Description Syngenta (internships and studentship) 
Organisation Syngenta International AG
Country Switzerland 
Sector Private 
PI Contribution Support for PhD student Co-authored research papers Shared research programme
Collaborator Contribution Support for PhD student Co-authored research papers Expertise in modelling
Impact One PhD graduate (a further PhD student registered) Co-authored research papers
Start Year 2009
 
Description 50th Anniversary of the Fisheries Society of the British Isles 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The Jack Jones Lecture, 50th Anniversary of the Fisheries Society of the British Isles. Feminisation of Nature - An Unnatural History, Exeter, July 2017. C.R.Tyler
Assessing the oestrogenic potency and health impacts of wastewater treatment work effluents using ERE-GFP transgenic zebrafish.
FSBI Annual Symposium, Exeter, UK 3-7 July 2017
Oral presentation
Cooper, R.; Kudoh, T.; Tyler, C.R.; David, A.; Hill, E.
Year(s) Of Engagement Activity 2017
 
Description 9th Interntionaal Symposium of Reproductive Physiology of Fish Are Chemicals Impacting on Fish Populations? 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Participants in your research and patient groups
Results and Impact -
Year(s) Of Engagement Activity 2011
 
Description Chalkstream Headwaters 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Feminisation of Freshwater Nature - Chalk Stream Headwaters Annual Meeting at Sparsholt College, 24th November 2017
Year(s) Of Engagement Activity 2017
 
Description International Congress on Comparative Endocrinology, Canada 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Endocrine Disruption in Aquatic Systems. International Congress on Comparative Endocrinology, Canada. June 2017. Keynote speech.
Year(s) Of Engagement Activity 2017