Ecological and evolutionary responses to changing environments in a laboratory species assemblage

Lead Research Organisation: Imperial College London
Department Name: Life Sciences - Biology

Abstract

Ecosystems face changing environments over a wide range of time-scales, from yearly changes to those occurring over millions of years. Moreover, the rate and magnitude of environmental change has been intensified by human activities. Therefore, a key task for understanding the dynamics of living systems, and for predicting the impacts of human activity on those systems, is to understand how ecosystems respond to environmental change. Two types of response can be considered. 1) Ecological. This entails changes in species abundances and distribution, leading to a different community structure before and after the environmental change. 2) Evolutionary. This entails genotypic change within species leading to their adaptation to the new conditions present after the environmental change. Despite considerable work on both types of response, typically they have been treated separately. Ecosystem studies have focused on ecological changes, whereas evolutionary studies have focused on single species or pairs of interacting species such as pathogens and hosts. Yet, most organisms live in diverse assemblages: inferences on evolutionary dynamics from such small systems may not apply in realistic settings. This project will address the fundamental question of whether species diversity tends to increase, decrease or not affect the amount of evolution within species. Our approach is to study evolution in the laboratory, using species of bacteria isolated from tree-holes of beech (Fagus sylvatica). These bacteria can be cultured in mixtures of different numbers of species in the lab, and have been used previously to explore the relationship between diversity and ecosystem function. By virtue of rapid generation times and very large population sizes, they also evolve fast enough to study evolution in species mixtures. We will assemble random mixtures of up to 24 species and expose them to environmental change, in terms of a shift in pH and resource type in turn. The evolutionary response of each species will be quantified using phenotypic assays and compared among treatments that differ in species richness and composition. Competition experiments between isolates from the same and different cultures will test for the occurrence of coevolutionary interactions. Bacteria have been widely used to test evolutionary hypotheses in vitro, but no previous studies have looked evolution in more than a pair of interacting species. The results will generate new conceptual understanding of the interaction between ecological and evolutionary processes in ecosystems facing environmental change.
 
Description 1) We conducted a large-scale experiment to investigate how species interactions in diverse communities affect evolution in new environments. The design considered communities of 2,3,6, and 12 species of bacteria, as well as monocultures of each species, and with multiple species compositions for each intermediate level of diversity. We found that overall functioning of the community, measured as yield, changed over time as a result of evolution in the strength of species interactions. The effects varied between different novel environments. The work provided evidence for ecological effects on evolutionary outcomes that are applicable to multiple systems of animals and plants as well as bacteria. Published in ISME J. 2014.

2) Further analysis of the experimental results revealed how the growth characteristics of component species evolved in response to the presence of other species. Species in low diversity communities evolved to grow less well in isolation than their ancestors, because of a trade-off in adapting to the presence of other species. This effect declined as species richness increased. Again this provides experimental data to predict how species might evolve in response to environmental change, and how that is affected by species interactions - a ubiquitous feature of real communities. Published in Proceedings of the Royal Society B, 2015.

3) We focused on one particular community of four bacteria species to demonstrate that species interactions evolve to be more positive over time, because of changes in chemical resource use, and this led to an increase in ecosystem functioning (measured as respiration rate). This was one of the first experimental evolution studies of multiple bacterial species cultured together and provides initial predictions for how bacteria are expected to evolve in diverse communities. Published in PLoS Biology 2012.

4) Further experiments looked at the possibility for genetic interactions among co-occurring bacterial strains. Specifically, we demonstrated that standing diversity of bacteria resistant to alternative antibiotics constrains the evolution of multi-drug resistance, unless they are able to exchange DNA. These results are among relatively few considering the effects of gene exchange on bacterial evolution in whole populations evolving to a changing environment experimentally. Published in Proceedings of the Royal Society B 2012.

5) We took these approaches into a field microcosm experiment, tracking the responses of natural bacterial communities (seeded into glass vessels) to warming against a background of natural fluctuations in temperature. We also manipulated the presence or absence of immigration from a local source pool. The results again were consistent with changes in species interactions being the main effect leading to changes in overall growth of communities. Immigration had differing effects depending on whether communities were in ambient or warmed conditions. These experiments - while conducted on bacteria over a few months - show some of the ways that communities are expected to respond to changing environments, which could apply to plant and animal communities over longer timescales faced with climate change. Published in American Naturalist 2015.

Please note - I had problems with ResearchFish, which had deleted my previous entries for this section and replaced them with entries from someone else's grant.
Exploitation Route The work has stimulated other research to consider evolutionary interactions in whole communities - both researchers interested in bacterial evolution, but also with potential impacts for practitioners, e.g. designing antibiotic treatments that avoid collateral damage on other species.
Sectors Environment,Healthcare

 
Description Our findings have demonstrated new theories and evidence that species interactions change evolution in multi-species communities. Eventually this will have impacts for how we consider dynamics of microbial communities, for example in treating disease or predicting environmental impacts. For now, the immediate impacts are in the academic field.
Sector Environment
 
Title Data from: Saturating effects of species diversity on life-history evolution in bacteria 
Description  
Type Of Material Database/Collection of data 
Year Produced 2015 
Provided To Others? Yes  
 
Description Coverage for research on New York Times website 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Microscopic Neighbors, Evolving Together





It seems obvious that how different living things in a community or ecological system bump up against one another would affect how they evolve. That would include everything from the mix of fish in a lake to the bacteria, fungi and insects that coexist in rainwater that pools in the roots at the base of a beech tree...

Readers of the website found out about this research
Year(s) Of Engagement Activity 2012
URL http://www.nytimes.com/2012/05/16/science/microscopic-neighbors-evolving-together.html?_r=0
 
Description Public engagement at Science Uncovered event at the Natural History Museum, 28th September 2012 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Public learned scientific information about microbial diversity and evolution in the context of digestive health

Public expressed interest and learned new facts
Year(s) Of Engagement Activity 2012
 
Description Science Uncovered - Natural History Museum (September 2013) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? Yes
Geographic Reach National
Primary Audience Schools
Results and Impact Science Uncovered is a widely-advertised and well-attended public outreach event hosted at the Natural History Museum in London, where scientist engage with the public face-to-face basis to discuss their research and its implications in an informal setting. I represented Imperial College London, accompanied by two PhD students, and discussed my group's work, which included the current grant, under the general theme of ecological responses and alterations to energy flux in food webs due to environmental stressors. At our stall we spoke to several hundred visitors throughout the day.

See description above.
Year(s) Of Engagement Activity 2013