Proteomic profiling: A novel approach to understanding the biological causes of soil hydrophobicity

Lead Research Organisation: Swansea University
Department Name: School of the Environment and Society

Abstract

This project will provide the foundation for understanding the relationship between the presence and/or absence of (hydrophobic) protein and soil hydrophobicity. The results will contribute to identifying the proteomic dynamics, which influence soil hydrology and structure, and ultimately the ability of soils to absorb water, support biomass growth, store carbon, and to capture and degrade pollutants. Soil hydrophobicity arises from the release of organic compounds by plants and soil microbes and it reduces or eliminates the ability of soils to absorb water. Depending on its severity, affected (environmental and agricultural) soil areas may not absorb water for periods ranging from minutes to months. After eventually wetting, soil hydrophobicity typically returns following dry periods, when soil moisture levels fall below a critical threshold. Its effects include reduced biomass production, inefficient use of irrigation water, preferential leaching of agri-chemicals and enhanced runoff. The latter contributes to increased flooding and soil erosion, which in turn can damage land. Also, soil water repellency is likely to affect microbial mobility and therefore the ability of soils to capture and degrade pollutants. Hydrophobicity is also relevant for carbon sequestration in soil, as it protects soil organic matter against decomposition. Despite these far reaching environmental and (agro-)economic consequences, the fundamental biological causes of soil hydrophobicity and its transient behaviour are not well understood. Addressing these research gaps is now possible through the application of novel experimental approaches in a crossdisciplinary project, bridging the fields of soil microbiology, environmental proteomics, and soil hydrology. The project will examine mainly UK grassland and dune soils with various characteristics and hydrophobicity, in order to determine and correlate (i) presence or accumulation of specific water-repellent proteins with the occurrence and fluctuations in soil hydrophobicity; (iii) temporal soil-derived protein profiles with the occurrence and fluctuations in soil hydrophobicity. It exploits novel analytical techniques, which include (a) hydrophobic protein extraction procedures under extreme conditions which have never been applied to environmental samples, including soils; and (b) novel general methods for extraction of proteins from soils. The project will lead to an understanding of the influence that soil protein have in determining the hydrophobicity of the soil around them and the manner in which hydrophobicity may change as protein profiles change reflecting varying environmental conditions. This knowledge is critical for accurate prediction of occurrence and effects of soil hydrophobicity, especially the transitions between wettable and non-wettable states, and development of optimum and sustainable natural resource management strategies for soil system functioning. The project is particularly relevant and timely in the context of climate predictions for the coming decades, which suggest more prolonged drought periods as well as more intense precipitation events for the UK and many other regions. Such changes in climatic conditions may induce more widespread development of hydrophobicity in soils, which in turn reduces infiltration and water storage and may increase the number of flooding events during intensely wet periods.

Publications

10 25 50
 
Description In this NERC Small Grant we developed and successfully tested proof-of-concepts methodologies in soil protein and soil imaging analyses. Our progress made towards characterizing and identifying the biological causes of soil hydrophobicity is of critical importance for an improved ability to monitor and predict soil hydrophobicity and may help development of measures to alleviate soil hydrophobicity. This is particularly timely considering the predicted climatic changes for the UK resulting.
Exploitation Route Our methodological advances in soil proteomics and imaging could be applied to other science, technology and engineering areas.
Sectors Aerospace, Defence and Marine,Agriculture, Food and Drink,Environment,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description The outcomes of this small grant was used to develop and apply for a standard size grant to study the process of soil hydrophobicity in far more detail, going over scales from nanometer to fieldscale, in collaboration with the University of Plymouth and with project partners Rothemsted Research and the MetOffice. Through successfully obtaining further funding worth ~£900k for two institutes, economic impact was created through creation of three high-skilled PDRA positions, allowing the UK to strengthen its state-of-the-art science reputation.
First Year Of Impact 2013
Sector Agriculture, Food and Drink,Environment,Manufacturing, including Industrial Biotechology
Impact Types Societal,Economic

 
Description NERC Standard grant Award
Amount £696,481 (GBP)
Funding ID NE/K004638/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 05/2013 
End 05/2016
 
Description New collaboration leading to co-developed proposal to Royal Society which led to award 
Organisation Swansea University
Department Department of Geography
Country United Kingdom 
Sector Academic/University 
PI Contribution The skills and knowledge gained in the Small Grant were used to develop a new collaboration with Dr Emilia Urbanek, Royal Society Fellow. She was able to apply to the Royal Society with a research proposal that used knowledge and skills obtained in this Small Grant. This proposal was awarded (£~125k), which has lead to the appointment of a PhD student which is under our joint supervision. Due to the funding body regulations, I could not be named as CoI on the proposal. Nonetheless, I am involved with the student supervision who is jointly working in our laboratories and with experimental design and supervision of the molecular part of the project.
Collaborator Contribution CoI Doerr reviewed the proposal prior to submission.
Impact None yet, too soon.
Start Year 2013
 
Description Poster presentation and networking at the annual conference of the British Society for Soil Science, Sep 3-4 Manchester 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact The three posters presented by PI GVK (2 posters related to 2 NERC projects, 3rd poster other project) yielded interest from delegates with questions and discussions.

The posters presented by PI GVK and further networking yielded a new collaboration with the British Geological Survey.
Year(s) Of Engagement Activity 2014
 
Description Poster presentation at the 5th Congress of European Microbiologists (FEMS 2013) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Type Of Presentation poster presentation
Geographic Reach International
Primary Audience Other audiences
Results and Impact Poster presentation describing the proof-of-concept results from the NERC Small Grant and networking established new contacts for metaproteomic collaboration.


Large conference with excellent opportunities to exchange knowledge with delegates
Year(s) Of Engagement Activity 2013
URL http://www2.kenes.com/fems2013