Towards a systematic understanding of aerobic methylated amine metabolism in the ocean

Lead Research Organisation: University of Warwick
Department Name: Biological Sciences

Abstract

Methylated amine compounds (MAs) are ubiquitous in the ocean and play significant roles in marine nutrient cycling and atmospheric chemistry. MAs are involved in the formation of aerosols and neutralization of atmospheric acidity resulting from the oxidation of nitrogen- and sulfur-containing compounds. MAs also contribute to the 'greenhouse effect' by the formation of nitrous oxide (N2O) and hydrogen cyanide (HCN) from their oxidation by hydroxyl radicals and ozone, and by being precursors for methane (CH4) produced by methanogens. Despite the global importance of marine MAs, modelling and quantifying their environmental impacts has been hindered by a paucity of data on the origins and sinks of these compounds. Microorganisms are known to use MAs as sources of energy and nutrients therefore affecting the concentrations of MAs in the ocean and hence fluxes across the air-sea interface; however, the identities of these key players and metabolic pathways remain largely unknown. The objective of this proposed research is to characterize the diversity and abundance of marine MA utilizers and to investigate the enzymology and regulation of MA-metabolizing pathways using model marine microorganisms. This research will test the hypothesis that MAs are used as a carbon (C) source by specialized methylotrophs (bacteria that use one-carbon (C1) compounds) in the ocean, and that diverse marine microorganisms can metabolize MAs as a source of nitrogen (N).

Publications

10 25 50
 
Description Methylated amine compounds (MAs) are ubiquitous in the ocean and play significant roles in marine nutrient cycling and atmospheric chemistry. MAs are involved in the formation of aerosols and neutralization of atmospheric acidity resulting from the oxidation of nitrogen- and sulfur-containing compounds. MAs also contribute to the "greenhouse effect" by being precursors for methane (CH4) produced by methanogens. Despite the global importance of marine MAs, modelling and quantifying their environmental impacts has been hindered by a paucity of data on the origins and sinks of these compounds. Microorganisms are known to use MAs as sources of energy and nutrients therefore affecting the concentrations of MAs in the ocean and hence fluxes across the air-sea interface; however, the identities of these key players and metabolic pathways remain largely unknown. Thanks to this fellowship, I have identified a new pathway used by some ecologically important marine bacteria (eg the marine Roseobacter clade) for the catalysis of MAs (Chen Y, 2012 Environ Microbiol). It is confirmed that MAs can be important for marine bacteria as nitrogen, carbon as well as supplementary energy sources, therefore suggesting that MAs play a key yet overlooked role in marine biogeochemical cycles. I have further characterized the new enzymes in this pathway, including the trimethylamine monooxygenase (Chen et al 2011 PNAS). I have estimated that 20% of the bacteria in the surface ocean contain this enzyme. It is also interesting that this enzyme can also oxidise another important oceanic climate-active gas-dimethylsulfide (DMS) and it may therefore play a role in marine sulfur cycle.
Exploitation Route through this project, I have identified novel enzymes involved in this new MA metabolic pathway and some of these has a potential in industrial biotechnology, including the trimethylamine monooxygenase. This type of enzymes is known to catalyze the NADPH-dependent N- or S- oxygenation of heteroatom-containing compounds. I am currently exploring their potential application in bio-industry.
Sectors Environment

URL http://www2.warwick.ac.uk/fac/sci/lifesci/research/ychen/current_projects/
 
Description This work focuses on the role of microbes in the metabolism of climate active methylamines. Through the research we have discovered many novel enzymes. Key enzymes in the indirect methylamine oxidation pathway are of commercial interests. Microorganisms that can utilize MAs can also be used to develop a microbial-based clean up process to remove odour compounds during waste treatment. A number of studies now aim to develop efficient biocatalyst, such as trimethylamine monooxygenase. We have also presented our finding to A level students and school pupils. The research is also of interest to the general public since marine microbiology and climate change control are important issues of wide public concerns and receive considerable attention in media.
First Year Of Impact 2011
Sector Agriculture, Food and Drink,Chemicals,Environment
Impact Types Societal,Policy & public services