Are all hosts created equal? Transmission dynamics in a natural multi-host parasite community

Lead Research Organisation: University of Liverpool
Department Name: Institute of Integrative Biology

Abstract

Many of the most pressing concerns about emerging infectious disease in humans (eg pandemic influenza, West Nile virus, Hantavirus) and wildlife (eg bovine TB in cattle and badgers, squirrel pox transmission from grey to red squirrels) arise from parasites moving from one host species to another. As such there is considerable interest in how the composition of possible hosts in a community affects whether a disease spreads or not. Each host species can differ in their susceptibility to the parasite, their social structure and/or behaviour, so that the composition of the host community plays a key role in determining why some parasites cause an epidemic (i.e HIV), while others don't (i.e. Ebola). To aid our understanding of these complex, real-world communities, several mathematical models have been developed which show that the contribution each host species makes to the parasite's ability to spread is fundamental in determining whether the disease persists, and the outcome of targeted control. To date, however, these theories have not been tested with actual data, meaning they largely remain abstract conceptual frameworks. In particular, it is not known whether the host species' contributions to disease spread can be determined solely from the number of infected individuals within each host species. This is important as most studies of parasites that infect multiple hosts are likely to be purely observational, because it is logistically or ethically unfeasible to conduct the necessary experiments. However, there may be general guidelines, based on fundamental aspects of host-parasite ecology that can be used to infer these host contributions to parasite transmission and persistence. For example, both the transmission biology of the parasite (ie how it moves from one host to another) and the way host species interact in the community (eg their movement patterns, habitat usage, resource competition etc) will determine how each host species contributes to parasite persistence. Clearly, there is a need to determine whether disease patterns that we see in nature, combined with a basic understanding of host-parasite biology, can be used to predict how parasites will respond to control efforts targeting one host species or another. We will use a highly novel combination of large-scale manipulation experiments and mathematical modelling to measure host species contributions to parasite transmission across a diverse, natural multi-host-multi-parasite community. Overall we will provide one of the most comprehensive views of how very different parasites, with different transmission modes, use multiple host species to persist, and the implications for how such parasites respond to targeted host treatment. Given the increasing concerns about emerging infectious diseases around the globe, it has never been more pressing to develop a genuine understanding of the factors affecting parasite invasion, transmission, persistence, and control. This project will be a major step in that direction.

Planned Impact

As described in the 'Academic beneficiaries' section of this form, our primary beneficiaries will be the broad international scientific community working on infectious diseases. These academics, and wider collaborators, will directly benefit from the unique insights gained from this project, guiding current studies, and encouraging future research efforts that embrace the complexity of natural host-parasite communities. Impact with our primary beneficiaries, the academic community, will be initially through routine channels (peer reviewed publications (open access where possible), conference presentations, visits to other institutions and visits to our field sites). We will also initiate a Wiki-style online discussion resource, hosted through Liverpool University, enabling researchers from across the globe the chance to discuss relevant issues. In addition, we will organise a 3-day workshop to explore practical aspects in the study of complex multi-host-multi-parasite communities, through a combination of presentations on key methodological topics (data analysis methods, mathematical modelling, ecological experimentation), discussion groups, and practical workshops in which participants will work through analyses of data in groups.

Other beneficiaries are future scientists. Throughout our existing NERC grant we have hired many undergraduate field assistants to help with the demanding trapping schedule and lab work of the project. These students have benefited enormously from this experience, gaining expertise in the technical aspects of the project (field work, small mammal handling, lab assays and parasite identification) and, possibly more importantly, the whole process of research. Many of these students commented that it was the best thing they did at University, and they felt genuinely inspired by the experience. These students are now applying for graduate degrees in areas such as computational biology, veterinary parasitology and conservation, and we believe that their experience with us is crucial for their development as young scientists. We will do the same with this project, employing a number of undergraduate assistants (18) throughout its 3 years, and providing them with the opportunity to play a fundamental role in biological research. Furthermore, we will expand these volunteer opportunities to allow science teachers, school students (for example through the Nuffield bursary scheme) and other members of the public, to gain first-hand experience in cutting edge science, research methods, and practical field skills.

Finally, this project will also have relevance for non-academic beneficiaries, including conservation policy makers interested in the role that infectious diseases can have on threatened species, and those in the medical and veterinary communities where transmission of a pathogen from wildlife is of vital concern. Given our tractable field system, we have the ability to do field large-scale field manipulations, which are difficult to impossible in other mammal and human systems. These results can therefore provide general insight into identifying what data are needed to measure the contribution of each host species to disease persistence. Thus, this project has the potential to provide clear guidelines to public health and agricultural bodies into how to collect and analyse the appropriate data necessary to develop truly effective disease management programmes.

To engage with non-academics, we will post a regular blog on an established blogpage hosted by the owners of one of our field sites (http://www.woodlands.co.uk/blog/). We will provide regular updates of host species abundance patterns throughout the year, allowing the public to appreciate the hidden biodiversity within these woodlands, and get a feel for the kind of research that we do.

Publications

10 25 50
 
Description We have made 2 notable findings:

1) We have created theoretical frameworks to identify the contributions of different host species to disease maintenance in host communities, as well as to predict the consequences of various control strategies. We used data from a wild mammal - multiple parasite system to test this framework (Streicker et al 2013; Fenton et al, 2015).

2) Through a combination of gene sequencing, analysis of observational data and large-scale experimental perturbations, we have shown that the is considerable 'covert specificity' among a community of co-circulating pathogen species within a natural mixed rodent host community. This means that pathogen species that appear to be generalists (able to infect multiple different host species) tend to comprise many host-specialist strains (Withenshaw et al, 2016; Fenton et al in prep.). Furthermore we showed that the 'filter' preventing infection by the different pathogen species is more likely to occur due to pathogen-rodent incompatibility, rather than from a lack of exposure.
Exploitation Route Our theoretical frameworks provide a simple means for identifying host species' contributions to disease transmission and persistence, from readily available parasitological data. These methods are widely applicable to a broad range of host-parasite systems and provide a simple, intuitive means of identifying 'key hosts' for optimally targeting control within infectious disease reservoirs.
Sectors Environment,Healthcare

 
Description NERC ACCE DTP STUDENTSHIP
Amount £78,300 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 10/2017 
End 09/2021
 
Description NERC Standard Grant
Amount £633,943 (GBP)
Funding ID NE/N009800/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 04/2016 
End 03/2019
 
Description NSFDEB-NERC: Diversity and disease: uniting community and disease ecology to understand how biodiversity affects parasite transmission
Amount £700,000 (GBP)
Funding ID NE/S013369/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 11/2018 
End 10/2021
 
Description Edinburgh Open Days 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Public were engaged in the presentation, leading to enthusiastic discussions.

There was general interest in the wild rodent research, specifically the community of parasites and pathogens that infect wild rodents.
Year(s) Of Engagement Activity 2012,2013,2014
 
Description Invited departmental seminar - Berlin Parasitology Seminar Series 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Research seminar
Year(s) Of Engagement Activity 2016
 
Description Invited departmental seminar - University of Bristol 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Research seminar
Year(s) Of Engagement Activity 2017
 
Description Invited departmental seminar - University of Glasgow 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Research seminar
Year(s) Of Engagement Activity 2017
 
Description Invited speaker - BSP Spring Meeting, Aberystwyth 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Invited speaker to BSP Spring Meeting, Aberystwyth
Year(s) Of Engagement Activity 2018
 
Description Presentation to CORE group 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Study participants or study members
Results and Impact Research talk to other members of the CORE research team, on the combination of empirical data and theory to understand occurrence and impact of coinfecting parasites on parasite dynamics and host health.
Year(s) Of Engagement Activity 2017
 
Description Special Thematic session, including Keynote presentation, at BES Annual Meeting 2022 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Special Thematic session organised by project member DD, involving Keynote presentation by project member AF, relating to the work undertaken on the project. Audience comprised academics from postgraduate stage upwards, with aim of summarising the state-of-the-art of the field and stimulating interest in the research area.
Year(s) Of Engagement Activity 2022