Integrating Macroecology and Modelling to Elucidate Regulation of Services from Ecosystems (IMMERSE)

Lead Research Organisation: Centre for Environment, Fisheries and Aquaculture Science
Department Name: CEFAS Lowestoft Laboratory

Abstract

Our knowledge of marine ecosystems is fragmented, and our ability to predict the consequences of various natural and human changes in those ecosystems is limited. To manage the marine environment we need to understand change and consequences of change over large areas and long time periods. In this project we will develop a whole-ecosystem approach to understand changes in marine ecosystems around the UK, and the services they provide.
Ecosystem services are the benefits that human society derives from the environment. These include food, recycling of materials and well-being. Coastal and shelf marine ecosystems are biodiverse and complex. They are highly productive, bringing huge benefits to humans. They are also under enormous pressure from human drivers such as fishing and climate change. The role of ecological structure in supporting key ecosystem services is not fully understood. Ecosystem services cannot be measured simply, and they vary in importance and magnitude according to how they are defined and observed. Understanding the ecosystem processes governing the way that services vary naturally, and in response to human pressures, requires a computer-modelling approach. NERC has good models, but these have limited ability to predict change in all but the lowest levels of marine food webs. Several well-respected modelling approaches focusing on food webs and larger organisms such as fish and mammals are commonly used, but gaps in knowledge hamper the inclusion of whole food webs into models that consider environmental and food web changes together. This is due to the way marine food webs have generally been studied in their separate components, at different scales or for specific applications such as biogeochemistry or fisheries.
We propose a highly integrated project to make best use of existing data spread among different data holders across the UK and beyond. The integrated data will be used for analyses based on the latest ecological theories to inform and improve a range of models. These models will be used collectively to examine changes in ecosystems and potential future consequences for the services they deliver. The geographical focus of the programme will be the western seas, from the western English Channel, through the Celtic and Irish Seas, to western Scotland, although relevant data from other parts of UK waters will be included where appropriate.
The novelty of this project is in using recent technologies to combine existing datasets into an integrated system with new experiments and field work for a genuine whole ecosystem analysis from phytoplankton to fisheries at whole shelf scales. We will include this new knowledge in models to examine how energy and materials move within food webs and how these are influenced by pressures. Model outputs will be translated to the services across the range of scales needed to inform management decisions.
The consortium brings together 28 key researchers from 10 UK organisations to integrate existing knowledge, data, models and new information, to allow us to understand how marine ecosystems will change in the future, and how those changes will alter the benefits humans derive from the marine environment. The project is part of a larger programme, and results and outputs will be crucial for supporting development of NERC's biogeochemical models, and application of model development to test the impact and efficiency of potential management interventions. The legacies of this project will include tools and combined datasets that will place the UK far ahead of the rest of the world in terms of our ability to conduct meaningful ecological and food web studies, and a world-leading capability to analyse and model whole ecosystems and understand the consequences of change in terms of ecosystems services.

Planned Impact

The IMMERSE programme will have far reaching impact upon a diverse range of beneficiaries, including policy makers, environmental managers, marine monitoring initiatives and wider society. The programme outputs will place the UK as an international leader in macroecology and ecosystem modelling by improving understanding of the regulation of key ecosystem services, scale-dependence in the underlying processes, functional diversity at different trophic levels and the impact of stressors on the marine environment. It will also provide vital data for, and improvements to, UK marine modelling to explore the impact of environmental change on the structure, function and services associated with marine food webs across scales.
The research and outputs generated by the programme will primarily be of direct relevance and benefit to UK and European policymakers and environmental managers working towards the sustainable exploitation of the UK and Europe's marine environment. These include those working within the Department for Environment, Food and Rural Affairs, Marine Scotland, Scottish Natural Heritage, Natural Resources Wales, Joint Nature Conservation Committee (JNCC), United Nations Environmental Programme, United Nations Educational, Scientific and Cultural Organization's Intergovernmental Oceanographic Commission, International Council for the Exploration of the Sea (ICES) and others. By using already well-established links with these organizations and developing these further, targeted outputs will be disseminated to policy beneficiaries to help refine current indicators of state and drivers, ensuring a common currency and, therefore, a smooth transition of robust science between the scientific and policy communities.

The novel, whole system approach employed in IMMERSE will also be of benefit to a wide range of organisations and networks with an interest or involvement in marine monitoring, resource management, marine planning, fisheries, aquaculture, energy provision, licencing, predicting ecosystem change, conservation and food security. The programme will consolidate a range of data sources to provide these organisations and networks with clean, rationalised datasets that are of meaningful and add value to their activities. These include: AFBI, British Ecological Society (BES), Celtic Seas Partnership (CPS), Cefas, Sea Watch Foundation, fisheries Regional Advisory Councils, RSPB, Valuing Nature Network, Marine Climate Change Impacts Partnership, and data networking and integrating groups such as Ocean Biogeographic Information System (OBIS), World Register of Marine Species (WoRMS), National Biodiversity Network, Marine Environmental Data and Information Network (MEDIN), UK Integrated Marine Observing Network (UKIMON), European Marine Ecosystem Observatory (EMECO), UK Marine Monitoring and Assessment Strategy Evidence Groups, NERC Knowledge Exchange Programme on Sustainable Food Production, National Center for Ecological Analysis and Synthesis, British Marine Aggregate Producers Association, Ifremer and IUCN. Existing collaborations combined with new links will facilitate the dissemination and publicity of IMMERSE outputs to the benefit of these organisations and networks.

There is a wider public interest in the research of IMMERSE in that shelf seas are a source of food and energy that is susceptible to environmental change with subsequent socio-economic implications. This includes interest from educational institutes that often require societally-relevant, novel issues to provide context to the science curriculum. This programme will also demonstrate to wider interest groups the shift from individual, narrowly focused studies to "big picture" research endeavours, designed to feed into addressing large social challenges and illustrate how marine science can provide wide-ranging benefits to society.
Methods for engaging with stakeholders are described in the IMMERSE Pathways to Impact.
 
Description Develop modelling capabilities and capabilities to interrogate, integrate and utilise Cefas' unique data holdings to address and solve significant marine and aquatic problems for a range of stakeholders.
Exploitation Route Capabilities used to assess, and ultimately manage, marine ecosystems towards desirable states.
Sectors Environment,Government, Democracy and Justice

 
Description Outputs and activities listed under "Common Outcomes" support evidence-based environmental policy by improving flow between scientists and policy makers, formulating and designing R&D that is more clearly directed at issues that influence policies and providing scientific input into national (i.e. UK) and international (i.e. ICES) advice.
First Year Of Impact 2016
Sector Environment
Impact Types Policy & public services

 
Title Completion of Ecosim Model development 
Description In close cooperation with SAMS, the spatial ecosystem model has been calibrated by Cefas so that species co-exist in space and persist over time. Model predicted distributions of species and the effort of the fishing fleet have been compared with observed data and Cefas' contribution to the modelling work (Ecopath, Ecosim and Ecospace) has been quality-controlled and documented (Lauria V, Posen P, Mackinson S. 2016. An Ecopath with Ecosim and Ecospace model for the Celtic Sea. MERP-IMMERSE project final report. Cefas, Lowestoft). 
Type Of Material Computer model/algorithm 
Year Produced 2016 
Provided To Others? Yes  
Impact The model, all relevant documentation and files have been handed over to Dr Sheila Heymans (SAMS PI) and her PDRA for further use in MERP WP1 and WP3. Develop modelling capabilities to address and solve significant marine and aquatic problems for a range of stakeholders. 
 
Title ERSEM Multiple Benthic Components Enhancement 
Description The two main benthic consumers in ERSEM (deposit feeders and filter feeders) have been replaced with a deposit-filter continuum making one niche dimension and a size spectrum making a second. A means of specifying the degree of niche overlap between these various benthic consumers has been provided by means of a parameter in the FABM model description language developed by workers at PML. In 2018, this was progressed by exploring how pattern of benthic functional group diversity are altered by changes in temperature. Preliminary results suggest that a small amount of warming could cause major shifts in benthic diversity. The Cefas modeller who has developed this model improvement (Jonathan Beecham) has now retired. No alternative project funds could be identified to support further progress and this specific activity is now closed. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact Develop modelling capabilities to address and solve significant marine and aquatic problems for a range of stakeholders. 
 
Title Ecosim Model development 
Description On 28th-30th January 2014, a MERP workshop was held at Cefas on calibrating the dynamic Ecosim model with time series data. In November 2015, GIS data layers for habitat fisheries and the association of species and fisheries to their habitats were created and loaded into the spatial ecosystem model. Dr Stephen Mackinson (Cefas) subsequently delivered documentation describing the Ecosim model calibration for the purpose of presenting it as a key run at the ICES Working Group on Multispecies Assessment Methods (WGSAM). 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Develop modelling capabilities to address and solve significant marine and aquatic problems for a range of stakeholders. 
 
Title Integration of data into MERP 
Description Cefas data relevant to MERP are fully integrated and can be accessed, interrogated and visualised for scientific and policy purposes, using MERP ecoinformatics tools. 
Type Of Material Data handling & control 
Year Produced 2016 
Provided To Others? No  
Impact Develop capabilities to interrogate, integrate and utilise Cefas' unique data holdings to address and solve significant marine and aquatic problems for a range of stakeholders. 
 
Title Integration of model outputs into the Cefas MSFD Assessment Tool (CefMAT) 
Description Incorporation of key MERP model into the UK marine online assessment tool (CefMAT) to facilitate its use to inform MSFD assessments. 
Type Of Material Data handling & control 
Year Produced 2018 
Provided To Others? Yes  
Impact MERP products will be made available to decision-makers working to deliver MSFD, so are more likely to be used in assessments. Examples of model outputs have been assessed and used to develop mock up of products to include in CefMAT. In addition, further discussions have been had with Defra and ICES to share the initial results and discuss how this might be used in future. 
URL https://emeco.azurewebsites.net/
 
Title MERP Model Ensemble analyses 
Description Analysis of outputs by the MERP Model Ensemble reveal good consistency in the elasticity of bottom-up effects. Spatially and temporally resolved size-spectrum data from MERP's field sampling work are now being used to test predictions by the MERP Model Ensemble. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Develop modelling capabilities to address and solve significant marine and aquatic problems for a range of stakeholders. 
 
Title Species Size Spectrum Model (SSSM) extension 
Description The Species Size Spectrum Model (SSSM) was extended from its previous version. Using the nonlinear SSSM a theory for the formation of dome patterns, known empirically for several decades, was developed. An accompanying article has been published in Nature Communications (Rossberg et al. "Dome patterns in size spectra generated by amplifying top-down trophic cascades"). 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact Develop modelling capabilities to address and solve significant marine and aquatic problems for a range of stakeholders. 
 
Title Systems model for sea bass 
Description Consideration of feedback between environmental, social, and economic systems is difficult but crucial to understand marine socio-economic systems. Feedback loops are important for making accurate predictions of the response of systems to both the pressures exerted and the management measures applied. Systems dynamics provides a promising approach that is gaining support in environmental economics, and research applications exist for marine management. Exploitation of the northern stock of the European seabass (Dicentrarchus labrax) is challenging as the stock has been declining since 2010, leading to the implementation of management measures for both commercial and recreational fisheries to reduce fishing mortality. However, a management approach that partitions catch between recreational and commercial fishers, and accounts for socio-economic benefits is required. In this study, a systems approach is used to develop a model that captures biological, social, and economic elements of the UK seabass fishery. This includes sub-models of population dynamics, number of commercial and recreational fishing trips and the value of recreational and commercial catches, and feedbacks between the sub-models. The models is parameterised and tested against the stock assessment. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact Develop modelling capabilities to address and solve significant marine and aquatic problems for a range of stakeholders in sea bass. 
 
Description European Maritime and Fisheries Fund (EMFF) project titled "Sea Bass Fisheries Conservation UK" 
Organisation Eastern Inshore Fisheries and Conservation Authority
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Provision of sea bass systems model to underpin wider reporting on social and economic impacts of possible regional bass management plans, incorporating an assessment of the current impact of emergency measures in relation to historical baseline and a scenario-driven future regional forecast.
Collaborator Contribution Working with the New Economic Foundation to develop assessment of the social and economic impacts using the sea bass model.
Impact Aim to facilitate the development and implementation of local fishery management plans for the European sea bass stock in UK waters
Start Year 2018
 
Description European Maritime and Fisheries Fund (EMFF) project titled "Sea Bass Fisheries Conservation UK" 
Organisation Essex Wildlife Trust
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Provision of sea bass systems model to underpin wider reporting on social and economic impacts of possible regional bass management plans, incorporating an assessment of the current impact of emergency measures in relation to historical baseline and a scenario-driven future regional forecast.
Collaborator Contribution Working with the New Economic Foundation to develop assessment of the social and economic impacts using the sea bass model.
Impact Aim to facilitate the development and implementation of local fishery management plans for the European sea bass stock in UK waters
Start Year 2018
 
Description European Maritime and Fisheries Fund (EMFF) project titled "Sea Bass Fisheries Conservation UK" 
Organisation Kent & Essex Inshore Fisheries
Country United Kingdom 
Sector Public 
PI Contribution Provision of sea bass systems model to underpin wider reporting on social and economic impacts of possible regional bass management plans, incorporating an assessment of the current impact of emergency measures in relation to historical baseline and a scenario-driven future regional forecast.
Collaborator Contribution Working with the New Economic Foundation to develop assessment of the social and economic impacts using the sea bass model.
Impact Aim to facilitate the development and implementation of local fishery management plans for the European sea bass stock in UK waters
Start Year 2018
 
Description European Maritime and Fisheries Fund (EMFF) project titled "Sea Bass Fisheries Conservation UK" 
Organisation North Western Inshore Fisheries and Conservation Authority (NW IFCA)
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Provision of sea bass systems model to underpin wider reporting on social and economic impacts of possible regional bass management plans, incorporating an assessment of the current impact of emergency measures in relation to historical baseline and a scenario-driven future regional forecast.
Collaborator Contribution Working with the New Economic Foundation to develop assessment of the social and economic impacts using the sea bass model.
Impact Aim to facilitate the development and implementation of local fishery management plans for the European sea bass stock in UK waters
Start Year 2018
 
Description European Maritime and Fisheries Fund (EMFF) project titled "Sea Bass Fisheries Conservation UK" 
Organisation Southern Inshore Fisheries & Conservation Authority
Country United Kingdom 
Sector Public 
PI Contribution Provision of sea bass systems model to underpin wider reporting on social and economic impacts of possible regional bass management plans, incorporating an assessment of the current impact of emergency measures in relation to historical baseline and a scenario-driven future regional forecast.
Collaborator Contribution Working with the New Economic Foundation to develop assessment of the social and economic impacts using the sea bass model.
Impact Aim to facilitate the development and implementation of local fishery management plans for the European sea bass stock in UK waters
Start Year 2018
 
Description European Maritime and Fisheries Fund (EMFF) project titled "Sea Bass Fisheries Conservation UK" 
Organisation University of Essex
Country United Kingdom 
Sector Academic/University 
PI Contribution Provision of sea bass systems model to underpin wider reporting on social and economic impacts of possible regional bass management plans, incorporating an assessment of the current impact of emergency measures in relation to historical baseline and a scenario-driven future regional forecast.
Collaborator Contribution Working with the New Economic Foundation to develop assessment of the social and economic impacts using the sea bass model.
Impact Aim to facilitate the development and implementation of local fishery management plans for the European sea bass stock in UK waters
Start Year 2018
 
Description Joint PhD studentship entitled "The macroecology of biological traits in UK marine ecosystems" under the Sheffield-led ACCE DTP 
Organisation Plymouth Marine Laboratory
Country United Kingdom 
Sector Academic/University 
PI Contribution Cefas acts as CASE partner for this PhD.
Collaborator Contribution The PhD project benefits from initiatives involving the supervisory team to collate new data, to mobilise existing data at the UK (e.g. MERP) and EU scales (e.g. EMODnet), and to develop phylogenetically informed statistical methods to fill gaps in relevant databases.
Impact A student (Francesca Quell) has commenced her studies in October 2018. She is jointly supervised by MERP's Dr Tom Webb (Sheffield University), Jorn Bruggeman (PML), Dr Andrew Hirst (Liverpool University) and Dr Michaela Schratzberger (Cefas). The student is developing a comprehensive understanding of the dynamics of biological traits in space and time (a) by integrating information of patterns of covariation between traits, environmental covariates, and evolutionary constraints and (b) by developing novel approaches that link species-level traits data to comprehensive macroecological datasets on distribution and abundance. The student has been benefitting from interactions with scientists and advisors at Cefas across disciplines. A manuscript, summarising the first chapter of her PhD thesis has been published in Aquatic Invasions (Quell et al. "Biological traits discriminate between native and invasive benthic invertebrates"). The PhD was defended successfully in November 2022.
Start Year 2018
 
Description Joint PhD studentship entitled "The macroecology of biological traits in UK marine ecosystems" under the Sheffield-led ACCE DTP 
Organisation University of Liverpool
Country United Kingdom 
Sector Academic/University 
PI Contribution Cefas acts as CASE partner for this PhD.
Collaborator Contribution The PhD project benefits from initiatives involving the supervisory team to collate new data, to mobilise existing data at the UK (e.g. MERP) and EU scales (e.g. EMODnet), and to develop phylogenetically informed statistical methods to fill gaps in relevant databases.
Impact A student (Francesca Quell) has commenced her studies in October 2018. She is jointly supervised by MERP's Dr Tom Webb (Sheffield University), Jorn Bruggeman (PML), Dr Andrew Hirst (Liverpool University) and Dr Michaela Schratzberger (Cefas). The student is developing a comprehensive understanding of the dynamics of biological traits in space and time (a) by integrating information of patterns of covariation between traits, environmental covariates, and evolutionary constraints and (b) by developing novel approaches that link species-level traits data to comprehensive macroecological datasets on distribution and abundance. The student has been benefitting from interactions with scientists and advisors at Cefas across disciplines. A manuscript, summarising the first chapter of her PhD thesis has been published in Aquatic Invasions (Quell et al. "Biological traits discriminate between native and invasive benthic invertebrates"). The PhD was defended successfully in November 2022.
Start Year 2018
 
Description Joint PhD studentship entitled "The macroecology of biological traits in UK marine ecosystems" under the Sheffield-led ACCE DTP 
Organisation University of Sheffield
Country United Kingdom 
Sector Academic/University 
PI Contribution Cefas acts as CASE partner for this PhD.
Collaborator Contribution The PhD project benefits from initiatives involving the supervisory team to collate new data, to mobilise existing data at the UK (e.g. MERP) and EU scales (e.g. EMODnet), and to develop phylogenetically informed statistical methods to fill gaps in relevant databases.
Impact A student (Francesca Quell) has commenced her studies in October 2018. She is jointly supervised by MERP's Dr Tom Webb (Sheffield University), Jorn Bruggeman (PML), Dr Andrew Hirst (Liverpool University) and Dr Michaela Schratzberger (Cefas). The student is developing a comprehensive understanding of the dynamics of biological traits in space and time (a) by integrating information of patterns of covariation between traits, environmental covariates, and evolutionary constraints and (b) by developing novel approaches that link species-level traits data to comprehensive macroecological datasets on distribution and abundance. The student has been benefitting from interactions with scientists and advisors at Cefas across disciplines. A manuscript, summarising the first chapter of her PhD thesis has been published in Aquatic Invasions (Quell et al. "Biological traits discriminate between native and invasive benthic invertebrates"). The PhD was defended successfully in November 2022.
Start Year 2018
 
Description Mapping and quantifying the critically endangered Balearic shearwater in waters to the SW of the UK 
Organisation Bangor University
Country United Kingdom 
Sector Academic/University 
PI Contribution Dr Jeroen van der Kooij (Cefas) collaborated with James Waggitt (PDRA, University of Bangor) and others, on an analysis of the observer data recorded during the PELTIC time series, focusing on the distribution and abundance of Europe's only critically endangered seabird, the Balearic shearwater including an analysis of small pelagic fish prey as possible drivers. A collaborative paper has been published in Ecology & Evolution (Phillips et al. "Consistent concentrations of critically endangered Balearic shearwaters in UK waters revealed by at-sea surveys").
Collaborator Contribution Dr James Waggitt collaborated with Jeroen van der Kooij and used processed acoustic data to study predator prey relationships to explain the distribution and abundance of Balearic shearwaters in UK waters.
Impact Processing of observer and acoustic data collected aboard the RV Cefas Endeavour from 2013-2017.
Start Year 2020
 
Description Processing acoustic data on RV Prince Madog 
Organisation Bangor University
Country United Kingdom 
Sector Academic/University 
PI Contribution Jeroen van der Kooij (Cefas) collaborated with James Waggitt (PDRA, University of Bangor) and others, processing acoustic data collected aboard the Prince Madog during the 2016 MERP field sampling campaign. A collaborative articlehas been published in Biology Letters (Waggitt et al. "Combined measurements of prey availability explain habitat selection in foraging seabirds").
Collaborator Contribution James Waggitt collaborated with Jeroen van der Kooij and used processed acoustic data to study predator prey relationships near tidally mixing fronts.
Impact Processing of acoustic data collected aboard the Prince Madog during the 2016 MERP field sampling campaign.
Start Year 2018
 
Description Sea mammal and bird observers on RV Cefas Endeavour (in-kind contribution and collaboration) 
Organisation Bangor University
Country United Kingdom 
Sector Academic/University 
PI Contribution As in-kind contribution into MERP, and in collaboration with Dr Peter Evans (Bangor University) provision has been made for trained sea mammal and bird observers (sourced by Bangor University) to be placed on all relevant RV Cefas Endeavour surveys since early 2016. No suitable surveys were identified that did not already have existing arrangements with observer organisations. This, in combination with a change in Cefas' procedures for charging presence of additional staff joining surveys, led to this objective not being delivered.
Collaborator Contribution Provision of trained sea mammal and bird observers to join relevant RV Cefas Endeavour surveys.
Impact Information arising from observer data is used to identify areas with high densities of seabirds or marine mammals in relation to oceanographic and prey parameters and will contribute to the University of Bangor's modelling work of top down and bottom up food web processes.
Start Year 2016
 
Description MERP Science in the news 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact MERP scientists were filmed during their benthic sampling cruise by the news station Al Jazeera for a news segment looking at marine science across the UK. The programme explored how different research methods are being bought together to understand the complexity of the marine environment, the footage aired on Saturday 26th November every hour for a 24hr period.
Year(s) Of Engagement Activity 2015
 
Description MERP Stakeholder Symposium 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact In April 2018 MERP hosted a symposium for a broad range of stakeholders. Throughout the 4-year programme MERP has engaged actively with stakeholders including relevant marine policy formers, managers, regulators, NGOs, and industry. The Symposium was design to allow us to share with stakeholders across the UK how the advances made across MERP could support the broad management and sustainable use of the UK's marine environment.
Year(s) Of Engagement Activity 2018
 
Description Marine Ecosystem Research Programme/Defra Briefing 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Members of the Programme met with a range of Defra customers to discuss how outputs from the ongoing work could be potentially tailored to meet future policy needs. The aim is to ensure that scientific outputs will have maximum impact and reach the right audiences at the right time. By starting the dialogues at this early stage we hope to ensure a clear chain for supporting policy and management.
Year(s) Of Engagement Activity 2016