The velocity of evolutionary responses of species to ecological change: testing adaptive limits in time and space

Lead Research Organisation: University of Bristol
Department Name: Biological Sciences

Abstract

Climate change is causing the populations of some species to increase, some to remain relatively stable, and others to decline, even when the species co-exist and might be expected to exhibit comparable ecological responses (e.g., some southern species have expanded their ranges northwards, whereas others have retreated). This diversity of responses to climate change may reflect differences in their capacities to undertake evolutionary and plastic responses that determine success or failure. However, multi-species studies of historical evolutionary responses to environmental change are lacking. In the proposed research, we will use: (1) analyses of historical and present-day DNA from 30 species (10 declining, 10 stable and 10 expanding) to identify the commonality or diversity of adaptive responses to anthropogenic climate change; (2) experimental studies to tease apart plastic, epigenetic and evolutionary responses in a focal species; and (3) modelling to evaluate the contributions of evolutionary, epigenetic and plastic changes to the responses of British Lepidoptera to past and future climatic changes.

Moths and butterflies represent an ideal study group because extensive datasets allow us to document the ecological (population abundance, distribution change) and plastic (phenology) responses of species to climate change over the past four decades with a precision not possible for other taxa. Their annual (or faster) generations permit rapid evolutionary change as well as plastic responses to within- and between-year variation in climatic conditions. Museum collections will enable us to assess historical levels of genetic variation within our study species prior to 20th century anthropogenic climate change.

We will take advantage of recent advances in sequencing technology to quantify ancestral genetic variation in our study species, and compare this with current genomic diversity to enumerate genetic changes taking place in declining, stable and increasing species, and specifically to evaluate whether species with higher levels of genetic variation show greater ability to adapt to climate change. We will complement this multi-species analysis by evaluating the capacity of expanding, stable and declining populations of one focal species, Pararge aegeria (Speckled wood butterfly) to exhibit evolutionary change, phenotypic plasticity and epigenetic effects using experiments in which we manipulate environmental conditions during larval development (temperature, photoperiod and host-plant desiccation). These experiments will reveal if there are environmental thresholds beyond which adaptive plasticity fails, and the potential for plasticity to evolve and buffer species under future environments. We will then use dynamic simulation models that incorporate our empirical data to test the relative importance of phenotypic plasticity, epigenetic effects, and evolutionary responses in determining species' responses to climate change, and how the relative importance of these factors varies among different species and population types. Once calibrated, we can then use our models to project the responses of these species to future climate change, based on observed limits to adaptation and plasticity.

Distinguishing the key factors (ecological, demographic, and genomic) that determine species' responses to environmental change, and how these depend on evolutionary responses, will allow us to identify potential conservation strategies to facilitate population persistence and growth in the face of ongoing climate change.

Planned Impact

Our research will test how biological responses to environmental change depend on the plastic and evolutionary responses of populations to the physical and biological environments they encounter. We will estimate the amount evolutionary change within populations, identify the effects of genetic variation and plasticity on recent evolutionary rates (and vice versa), and evaluate the effects of within-population (genetic variation) and within-individual (plasticity) flexibility in the responses of species to a century of rapid environmental change.

1. Research users and their requirements. The output of our research will have direct relevance to: Government agencies, National NGOs/Conservation Charities, European/Global government and intergovernmental bodies/frameworks, and European/Global NGOs/Conservation Charities.
These organisations are keen to develop conservation strategies that will be robust under climate change. However, they are constrained by a lack of clear scientific guidance on what species, and under what conditions, maintaining genetic and plastic variation within species will be crucial for the persistence of communities and ecosystems.

2. Methods to engage end-users for maximum societal impact.
Partnership Government and NGOs typically require scientific outputs to be re-framed in a manner relevant to conservation policies and actions. We will do this through collaboration between researchers and stakeholders. Methods to engage end-users will include:

a) Co-development of research and publications. We will continue our strategy of co-development and co-authorship of scientific papers with Butterfly Conservation (BC) and using data collected by citizen scientists of the NHM, BC, and NERC CEH.

b) Assessment of need through a working group. We will organise a Knowledge Exchange workshop with ~20 stakeholders, including representatives from Project Partner Butterfly Conservation, as well as SNH, Natural England, JNCC, NRW, Forestry Commission, Defra, Buglife, RSPB, National Trust, National Trust Scotland, Plantlife, BSBI, WWF, UNEP and County Trusts, to present results and co-develop a summary of key results so to achieve maximum impact within their organisations and amongst their memberships.

c) Production of a report to summarise findings according to stakeholder needs. The report will identify factors affecting flexibility in the responses of species to rapid environmental change, and predictions for limits to flexibility in future and identify which types of species are most vulnerable. This will inform appropriate adaptation actions to ensure favourable conservation status of species. The exact form of the report will be shaped at the workshop.

d) Publication and presentation of report to stakeholders.
1. The report: will be published in a form appropriate to stakeholders (summarising major conclusions, with supplementary species-specific online information), the exact form depending on the advice of stakeholders during the workshop.
2. Public discourse: we will present our findings at BC's AGM and give talks to other stakeholders according to advice/invitations received through the workshop.

e) Wider dissemination to the general public. All partners have effective press offices and commitment to dissemination; we have produced six press releases in the last two years, with average success of ~100 press items per release. The NHM and BC will disseminate information through online publications and their communication networks (including links to all other UK and many international museums).

Publications

10 25 50
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Bridle J (2022) Understanding the biology of species' ranges: when and how does evolution change the rules of ecological engagement? in Philosophical transactions of the Royal Society of London. Series B, Biological sciences

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Bridle J (2020) Discovering the limits of ecological resilience. in Science (New York, N.Y.)

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Meier JI (2021) Haplotype tagging reveals parallel formation of hybrid races in two butterfly species. in Proceedings of the National Academy of Sciences of the United States of America

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Nadeau CP (2017) Climates Past, Present, and Yet-to-Come Shape Climate Change Vulnerabilities. in Trends in ecology & evolution

 
Description We have developed new analytical techniques for assessing the spatial and temporal context and tempo of evolutionary responses to environmental change. At the same time, we have conducted initial outlier analyses on genome sequences for several UK butterfly species, revealing evidence for large scale evolutionary change in the past 100 years, as well as evolutionary responses in contemporary populations across their range. Work is ongoing to analyse these genome in more detail, given the recent availability of extremely high resolution genomes for these butterfly species from the Sanger Institute. In addition, important progress has been made in terms of methods to analyse genomic data to test for demographic changes and selection during the recent past (currently being prepared for publication).

From another part of the project, we have evidence that high levels of phenological plasticity are associated with effective responses to climate change. We are now analysing data from laboratory experiments to test limits to this plasticity in a model butterfly system. Data suggests that larval adaptive plasticity exists within the typical range of environmental conditions of a species, but fails beyond this point. Data also suggests variation among UK populations in the form that this plasticity takes. Analysis is currently underway on gene expression data for these plastic changes, and indicates important shifts in the genetic basis for plasticity (suggesting local adaptation) across different regions of the UK.
Exploitation Route Once our genomic and ecological data are analysed (using start up money associated with my new appointment at UCL in 2020), we should still be able to estimate: (a) the extent to which ecological resilience in UK Lepidoptera has depended on evolutionary responses, both in time and space; (b) whether genetic variation present across species ranges now is sufficient to allow responses to climate change in time; (c) assess whether selection is acting on genes with particular functions, or positions in gene networks, implying constraint in the types of evolutionary change that are possible.
Sectors Agriculture, Food and Drink,Environment

 
Description Predicting sudden and widespread biodiversity loss on a rapidly warming planet - when and where does biology change things?
Amount £643,491 (GBP)
Funding ID NE/W006618/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 08/2022 
End 08/2025
 
Title Development of new modelling approaches to coalescent analysis of genomic data 
Description This technique uses a combination of forward and back simulation to model historical demography and selection 
Type Of Material Data analysis technique 
Year Produced 2019 
Provided To Others? No  
Impact The new approach has been tested on cichlid datasets, and is currently being prepared for publication. It is now also being applied to butterfly genomic data. 
 
Title Population genomic and genetic data on UK butterfly populations c. 1900 as well as in the modern day 
Description Genomic data from UK butterfly species, from across their contemporary geographical range, and from historical (NHM collections). Rearing of experimental crosses of Speckled Wood larvae at different temperatures to test for variation in fitness and in plasticity 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? No  
Impact These data are being analysed for evidence of evolutionary changes in the past, and across their range currently. Phenological data for Speckled Wood are being analysed for evidence of limits of plasticity in novel environments, and changes in genetic variation. 
 
Description Collaboration with the Natural History Museum, Madrid, to obtain genomic information from museum butterfly specimens and ecological data 
Organisation Museum of Natural History, Madrid
Country Spain 
Sector Charity/Non Profit 
PI Contribution Bringing genomic and population genetic expertise
Collaborator Contribution Museum specimens and historical data, along with data on historical and contemporary population ecology of these species
Impact This collaboration will extend the topic of this research to include the use of museum specimens from the southern end of the ecological margins of key species, in association with ecological data, and to include genomic information.
Start Year 2019
 
Description Collaborations with NGOs, museums, spatial ecologists, and genome biologists 
Organisation Butterfly Conservation
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution My research team (with Prof Mark Beaumont as co-I) are modelling ecological and genomic data to test against empirical data on recent evolution in UK butterflies and moths, to test how limits to adaptation affect responses to environmental change. In addition, I am collaborating on novel experimental analyses being conducted at the University of York. We are also conducting novel population genetic analyses of sequence data.
Collaborator Contribution (1) Generation of sequence data from historical and contemporary Lepidoptera species (2) Analysis of historical and contemporary transect data in relation to climate
Impact None as yet. Different disciplines are highlighted above
Start Year 2016
 
Description Collaborations with NGOs, museums, spatial ecologists, and genome biologists 
Organisation Natural History Museum
Country United Kingdom 
Sector Public 
PI Contribution My research team (with Prof Mark Beaumont as co-I) are modelling ecological and genomic data to test against empirical data on recent evolution in UK butterflies and moths, to test how limits to adaptation affect responses to environmental change. In addition, I am collaborating on novel experimental analyses being conducted at the University of York. We are also conducting novel population genetic analyses of sequence data.
Collaborator Contribution (1) Generation of sequence data from historical and contemporary Lepidoptera species (2) Analysis of historical and contemporary transect data in relation to climate
Impact None as yet. Different disciplines are highlighted above
Start Year 2016
 
Description Collaborations with NGOs, museums, spatial ecologists, and genome biologists 
Organisation UK Centre for Ecology & Hydrology
Country United Kingdom 
Sector Public 
PI Contribution My research team (with Prof Mark Beaumont as co-I) are modelling ecological and genomic data to test against empirical data on recent evolution in UK butterflies and moths, to test how limits to adaptation affect responses to environmental change. In addition, I am collaborating on novel experimental analyses being conducted at the University of York. We are also conducting novel population genetic analyses of sequence data.
Collaborator Contribution (1) Generation of sequence data from historical and contemporary Lepidoptera species (2) Analysis of historical and contemporary transect data in relation to climate
Impact None as yet. Different disciplines are highlighted above
Start Year 2016
 
Description Collaborations with NGOs, museums, spatial ecologists, and genome biologists 
Organisation University of Liverpool
Department Institute of Infection and Global Health
Country United Kingdom 
Sector Academic/University 
PI Contribution My research team (with Prof Mark Beaumont as co-I) are modelling ecological and genomic data to test against empirical data on recent evolution in UK butterflies and moths, to test how limits to adaptation affect responses to environmental change. In addition, I am collaborating on novel experimental analyses being conducted at the University of York. We are also conducting novel population genetic analyses of sequence data.
Collaborator Contribution (1) Generation of sequence data from historical and contemporary Lepidoptera species (2) Analysis of historical and contemporary transect data in relation to climate
Impact None as yet. Different disciplines are highlighted above
Start Year 2016
 
Description Collaborations with NGOs, museums, spatial ecologists, and genome biologists 
Organisation University of York
Department Centre for Reviews and Dissemination (CRD)
Country United Kingdom 
Sector Academic/University 
PI Contribution My research team (with Prof Mark Beaumont as co-I) are modelling ecological and genomic data to test against empirical data on recent evolution in UK butterflies and moths, to test how limits to adaptation affect responses to environmental change. In addition, I am collaborating on novel experimental analyses being conducted at the University of York. We are also conducting novel population genetic analyses of sequence data.
Collaborator Contribution (1) Generation of sequence data from historical and contemporary Lepidoptera species (2) Analysis of historical and contemporary transect data in relation to climate
Impact None as yet. Different disciplines are highlighted above
Start Year 2016
 
Description Engagement with policy makers activity: the role of evolution in ecological resilience 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact This was a workshop to explain to policymakers and NGOs the grant and our main findings so far. More generally, we explained the rationale of needing to understand evolutionary responses to predict ecological resilience. We also requested attendees to outline what they wanted to know, and what they felt would change their policy, or their use of scientific information. They reported finding the workshop especially interesting. A plain English summary of the workshop and our findings is currently in preparation.
Year(s) Of Engagement Activity 2019
 
Description Invited speaker to BES Workshop on Genomic responses to climate change 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presented talk in a genomic of climate change response for the British Ecological Society (invited contribution)
Year(s) Of Engagement Activity 2022