Evolutionary rescue and the limits to phenotypic plasticity: testing theory in the field

Lead Research Organisation: University of Bristol
Department Name: Biological Sciences

Abstract

Rapid climate change and habitat loss will cause many species to become extinct this century unless they can cope with changing and more extreme ecological conditions. Understanding what limits species' ecological tolerances is therefore an issue of critical scientific importance because it allows us to predict the consequences of ongoing rates of environmental change to populations and therefore to ecological communities.

A common way that organisms deal with environmental variation is to be 'plastic', i.e. to change their morphological, physiological or behavioural traits (their phenotypes) directly in response to their local environment, without requiring rapid evolutionary change. Such 'phenotypic plasticity' buffers changes in the environment, and can maintain fitness across the range of environments typically experienced by a species. Currently, most of the global responses of biodiversity to climate change have been ascribed to such phenotypic plasticity, rather than to actual evolutionary change, underlining its importance in maintaining ecological outputs.

However, the ability of phenotypic plasticity to cope with environmental change has limits. Not only is maintaining variation in gene expression likely to be energetically expensive, it also evolves to maintain fitness only within the range of environments a species experiences in its recent past. In novel or extreme conditions, there is therefore no reason that a species' plastic responses will still improve their ability to survive and produce offspring. Instead, plastic responses that were adaptive in former environments may actually reduce their fitness in new environments. This idea is especially worrying because it predicts that plasticity will be unable to cope as ecological change continues, leading to sudden population declines as critical environmental limits are exceeded. By contrast, other theoretical models predict that plastic responses will be able to evolve more quickly in novel environments, generating faster evolutionary responses than predicted by laboratory experiments under common garden conditions.

We will test these theoretical predictions by measuring the plastic responses of two ecologically divergent species of ragwort (genus Senecio) to changes in their altitudinal position, both within and outside their prevailing distributions on the slopes of Mount Etna, Sicily. These species, Senecio aethnensis and S. chrysanthemifolius differ in a number of phenotypic traits, as well as in the expression of key genes that are associated with adaptation to different altitudes. We will transplant genotypes of both species into a range of field conditions and monitor their performance and plasticity over a two-year period in order to determine each genotype's response to conditions outside its normal ('home') environment. We will measure growth and development parameters, and reproductive parameters as a measure of each genotype's local fitness, and test the degree to which the declines in fitness expected with changes in altitude are offset by plastic changes in their phenotype and in gene expression.

We predict that although observed plastic responses will keep individuals healthy and productive under their species' usual range of altitudinal conditions, phenotypic responses will no longer be appropriate with altitudinal changes beyond these limits. Such an empirical finding will have important implications for predicting the continued ability of species to respond plastically to climate change. In particular, it will suggest, the rapid evolution will be necessary to prevent population and species' extinction where rates of environmental change exceed prevailing conditions within their geographical range.

Planned Impact

Economy and society - understanding ecological resilience in changing environments
Biologists have a crucial role to play in generating global sustainability in the coming decades. Although storms and weather loom large in the public's imagination, many of the effects of climate change on human economies will be felt through its effects on the productivity of ecosystems and crops.

A key issue addressed by this research (and highlighted as a priority by the 2011 UK White Paper on Biodiversity) is the role within-species plasticity and evolution plays in the resilience of ecosystems and the biological services that they provide. Such limits to adaptive plasticity could cause sudden changes in ecological communities as well as population (and crop yield) declines as plastic tolerances are exceeded beyond critical limits. The research funded by this application will test the hypothesis that plasticity can only be expected to be adaptive within narrow ecological limits for a given species.

Predicting the ability of plasticity to continue to buffer changing and more variable environments is crucial to understanding these effects on productivity, and of benefit for international and national governments, to whom defining dangerous levels of environmental change (for food security and economic stability) is a crucial issue. In terms of plasticity this demands: (1) defining where limits to adaptive plasticity typically are relative to current and future environmental regimes and; (2) understanding whether phenotypic responses to marginal conditions will accelerate or prevent the evolution of wider ecological tolerances for species of key economic importance.

Crop breeders and the agricultural industry
The proposed research uses Asteraceae species as a model system to define regions of the genome that are crucial for adaptation (and plastic responses) to changing temperature, and more efficient water use. As well as providing general lessons for the limits of plasticity to environmental change, these genes may be of specific use for agronomically important plants within the Asteraceae, such as sunflowers, lettuce, chicory, and artichoke. "Plastic" genes (and an understanding of the limits to plasticity) are likely to become increasingly important in the coming century for improving the resilience of crop plants in agricultural environments that will not only to be warmer and drier on average in Europe, but also more variable. Our transcriptomic analysis of field-induced variation will be a first step towards identifying such "plastic" genes.

The general public
Beyond predicting the biological effects of climate change, and in addition to the fundamental interest in the rapid ecological divergence of these iconic plant species on Mount Etna, the issues of phenotypic plasticity explored in this proposal are part of what is often called the "Nature vs nurture" debate. Approaching this topic from a biological perspective, particularly using modern genomic and genetic tools, makes this discussion more nuanced than typically depicted by the popular press. However, we think it's important that the complexity of how genomes interact with their internal and external environments to make phenotypes is appreciated more generally. This is especially important because such interactions underlie important social issues, such as punishment and social cohesion, lifestyle choices, and health care funding and planning.

Publications

10 25 50
 
Description We have transplanted 1000s of cuttings of 40 genotypes of each of two species of Senecio daisy to four locations along an elevational gradient on Mount Etna, Sicily. Data from these studies suggests that one of the species (the one endemic to Mt Etna), shows very little plasticity in leaf form or growth form, even with high levels of environmental change. By contrast, the other species, typically found at lower elevations, shows high levels of plasticity. Further analysis of these data suggests high levels of variation in gene expression in one species, but not in another.

We have now carried out controlled crosses of one species, to test for genetic variation in plasticity, and its effects on fitness. We find high levels of genetic variation within populations that could allow rapid adaptation to new environments, even though they show reduced fitness within their home environment. We are continuing this work with extensive transplants of both species, both as cuttings and as seeds, across our transplant gardens.

Data from our 2017-8 results are published in Evolution (2022), with data from 2019 published in New Phytologist (2023), with two other manuscripts submitted, being resubmitted, or on the point of submission. Of particular interest have been matching variation in phenotypes and gene expression with fitness. We have several papers from this work uploaded as pre-submission versions, and we anticipate several important findings from this work. Important findings include increased potential for evolutionary rescue at edge populations within the home range, although this is only observed at early life stages and/or when these genotypes are transplanted to the range edge. However, this suggests that we underestimate the potential for evolutionary rescue, based on existing (adult) variation. With this in mind, we have been able to conduct additional field experiments in Sicily in 2020-1, thanks to the dedication our Sicilian collaborators, given we were unable to travel to the UK to conduct this fieldwork ourselves. Analysis of these data is currently ongoing. We also have recruited two PhD students (one at UCL, who is NERC funded), as a result of this work.

Additional publication from this award is a paper on other Mediterranean species, and their germination ecology (published in New Phytologist, 2020).
Exploitation Route These findings suggest that evolutionary rescue may be more likely in new environments, because important genetic variation in ecological resilience may be hidden within home sites, due to its low fitness there, or due to selection at earlier life stages.

This project - and the utility of Senecio as a model system to study genetic variation in fitness - has led to members of the research team (both PIs and PDRAs) writing a Tansley review for the New Phytologist (published in 2020).
Sectors Agriculture, Food and Drink,Environment

 
Title Adaptive divergence generates distinct plastic responses in two closely related Senecio species 
Description The evolution of plastic responses to external cues allows species to maintain fitness in response to the environmental variation they regularly experience. However, it remains unclear how plasticity evolves during adaptation. To test whether distinct patterns of plasticity are associated with adaptive divergence, we quantified plasticity for two closely related but ecologically divergent Sicilian daisy species (Senecio, Asteraceae). We sampled c.40 representative genotypes of each species from their native range on Mt Etna and then reciprocally transplanted multiple clones of each genotype into four field sites along an elevational gradient that included the native elevational range of each species, and two intermediate elevations. At each elevation we quantified survival and measured leaf traits that included investment (specific leaf area), morphology, chlorophyll fluorescence, pigment content and gene expression. Traits and differentially expressed genes that changed with elevation in one species often showed little change in the other species, or changed in the opposite direction. As evidence of adaptive divergence, both species performed better at their native site and better than the species from the other habitat. Adaptive divergence is therefore associated with the evolution of distinct plastic responses to environmental variation, despite these two species sharing a recent common ancestor. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL http://datadryad.org/stash/dataset/doi:10.5061/dryad.9w0vt4bhb
 
Title Chemical and physical composition of soil for four elevations on Mount Etna, Sicily, 2017 
Description This dataset contains chemical and physical composition of soil for four elevations on Mount Etna. Soil samples were collected in 2017 and 2019 and then analysed for chemical and physical composition by a commercial laboratory in Catania, Sicily. The measurements were conducted as part of a study in to transplanting of two Senecio species on Mount Etna. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://catalogue.ceh.ac.uk/id/3970a138-c035-40ac-bf1d-a2f8a464644a
 
Title Chlorophyll fluorescence data collected on Mount Etna, Sicily, 2017 
Description The dataset contains chlorophyll fluorescence data from different genotypes of two Senecio species on Mount Etna, Sicily. In 2017, multiple clones of c.40 genotypes for each of two Senecio species were transplanted at four elevations (500m, 1000m, 1500m, 2000m) on Mount Etna. For each species, five genotypes were chosen randomly and chlorophyll fluorescence was measured on four clones of each chosen genotype at each transplant elevation using an IMAGING-PAM fluorometer 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://catalogue.ceh.ac.uk/id/28880a9d-3d6b-4e8e-a1d3-8ed939222bdc
 
Title Climate data for Mount Etna, Sicily, 2017-2018 
Description This dataset contains climate data for Mount Etna in 2017. The measurements were conducted as part of a study in to transplanting of two Senecio species on Mount Etna. Dataloggers were deployed at each of the four transplant elevations (500m, 1000m, 1500m, 2000m) to record temperature. Daily maximum and minimum were extracted to understand how temperature varied across elevation and seasons. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://catalogue.ceh.ac.uk/id/35a9dcfa-cf47-44cf-ad1e-8b4b59238768
 
Title Data on genotypic and genetic variation in fitness and phenotypes of Senecio on Mt Etna as well as climate variation 
Description Results from transplant of parental and offspring crosses of Senecio genotypes as clones across four transplant gardens at different elevations. Data on overwintering and over summer survival, leaf morphology, physiology, and fitness (flower set). Gene expression data for selected genotypes, based on contrasting responses in fitness and phenotypes associated with transplants Data on germination success for parental genotypes at different elevations 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? No  
Impact Analysis is still ongoing, but suggests substantial variation in fitness that is only visible when genotypes are transplanted. 2019 transplants are ongoing, to extend this dataset, and obtain data on among year variation in these values. 
 
Title Field transplant of two contrasting Senecio wildflower species across an elevational gradient on Mount Etna, Sicily 2017 
Description This dataset contains survival, growth and leaf morphology data for multiple clones of c. 40 genotypes of two species of Senecio. The two Senecio species are native to low (S. chrysanthemifolius) and high elevations (S. aethnensis) on Mount Etna. Genotypes were propagated in a glasshouse and multiple clones of each genotype were then transplanted at four elevations (500m, 1000m, 1500m, 2000m) on Mount Etna in June-July 2017 before measurements were taken. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://catalogue.ceh.ac.uk/id/11bad517-507b-4b8f-9944-2c2e16e4e8c6
 
Description Collaboration with researchers at University of Catania on testing the effects of climate change on seed germination in endemic Sicilian plants 
Organisation University of Catania
Country Italy 
Sector Academic/University 
PI Contribution The PDRA on this grant assisted with extensive analysis of seed germination data.
Collaborator Contribution Fieldwork and seed collections, and germination experiments
Impact These data show evidence of among population variation in the seed germination profiles of different endemic plants from the Aeolian islands. This has important implications for conservation, and has been submitted to the Journal of Ecology for publication.
Start Year 2017
 
Description Collaborations with houseplant grower Plante Faro, Sicily 
Organisation Piante Faro
Country Italy 
Sector Private 
PI Contribution Supply of expertise and greenhouse space
Collaborator Contribution Adding to the research being done by the group
Impact No outcomes yet
Start Year 2017
 
Description New collaborations with plant physiologists 
Organisation Bulgarian Academy of Sciences
Country Bulgaria 
Sector Academic/University 
PI Contribution We have provided transplants of genotypes along an elevational gradient, which can be used to test genetic variation in key aspects of plant physiology
Collaborator Contribution Providing us with data on additional fitness and phenotypic traits for testing the evolution of phenotypic plasticity, its contribution to fitness, its genomic basis, and its impact on evolutionary rescue
Impact Pilot data from the first transplant that will be used to plan the experiments in 2018
Start Year 2017
 
Description Print media publicity for the Senecio project in Italy 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact An article in an Italian newspaper about the project on Mount Etna, as well as in the newsletter of the greenhouse company (Faro)

Follow up interviews to follow
Year(s) Of Engagement Activity 2018