Dynamic coupling of soil structure and gas fluxes measured with distributed sensor systems: implications for carbon modeling
Lead Research Organisation:
Rothamsted Research
Department Name: Sustainable Soils and Crops
Abstract
The goal of the proposed research is to develop two in-situ sensor systems that measure in-ground gas concentrations and strain/moisture/temperature/suction at different scales in order to provide data on the dynamics of gas flux and soil structure. One is based on distributed fiber optic sensor (DFOS) system that can provide measurements at meters to kilometers-scale, whereas the other is based on low-power sensor coupled with in-ground mesh-network wireless sensor network (WSN) system that provides data at selected local points in distributed manner. Both technologies are currently being prototyped at UC Berkeley (UCB).
The developed sensor systems will be trialed first in the unique wind tunnel-soil experimental facility available at the Colorado School of Mines (CSM). We propose an experimental plan designed to manipulate soil moisture fluctuations by balancing subsurface water introduction through precipitation events and losses to evaporation and evapotranspiration as controlled by atmospheric perturbations (temperature, wind speed, and relative humidity) so as to make more informed biogeochemical predictions and soil structure changes under changing climate conditions. Under the controlled environment, we will quantify the precision errors of the developed sensor systems. The developed systems will also be implemented in the fields of Rothamsted Research (RR) to examine its feasibility in the actual field conditions. The ultimate goal is to improve the predictive understanding of how atmospheric carbon loading is affected by soil structure changes.
The proposed sensor development and experimental research will lead to a substantial improvement of soil carbon models such as the RothC model developed at RR]. Each compartment in the model decomposes by a first-order process with its own characteristic rate. The IOM compartment is resistant to decomposition. The model adjusts for soil texture and its changes by altering the partitioning between CO2 evolved and (BIO+HUM) formed during decomposition, rather than by using a rate modifying factor, such as that used for temperature. Moreover, total CO2 effluxes are largely controlled by root respiration, and microbial respiration of soil organic matter including rhizospheric organic carbon and all of these processes are highly sensitive to soil structure. In this proposed research, we therefore hypothesize that soil structure change is strongly linked to soil gas generation. We will develop and implement sensor systems that measure both, which in turn will allow us to quantify the link. These new models will in the future allow the effects of soil management on carbon dynamics to be predicted and hence give an understanding of the impact of different soil management strategies (e.g. tillage) on soil sustainability.
The research will complement ongoing field research at RR supported by the BBSRC in the National Capability scheme and in ISP funding streams; especially on the delivery of nutrients to plants. The processes to be studied in the project are expected to lead to improved formulations to include multi-scale, multi-physics under development at RR by: (1) more rationally representing the coupled surface-subsurface processes, (2) including vegetation hydrodynamics and carbon and nutrient allocation, and (3) incorporating soil and genome-enabled subsurface reactive transport models that have explicit and dynamic microbial representation.
The project will lead to the development of spatially-distributed sensing systems in the field that can (1) sense changes in soil stricture and (2) link these changes to fluxes of N2O, CH4, CO2 and O2 into and from soils.
The developed sensor systems will be trialed first in the unique wind tunnel-soil experimental facility available at the Colorado School of Mines (CSM). We propose an experimental plan designed to manipulate soil moisture fluctuations by balancing subsurface water introduction through precipitation events and losses to evaporation and evapotranspiration as controlled by atmospheric perturbations (temperature, wind speed, and relative humidity) so as to make more informed biogeochemical predictions and soil structure changes under changing climate conditions. Under the controlled environment, we will quantify the precision errors of the developed sensor systems. The developed systems will also be implemented in the fields of Rothamsted Research (RR) to examine its feasibility in the actual field conditions. The ultimate goal is to improve the predictive understanding of how atmospheric carbon loading is affected by soil structure changes.
The proposed sensor development and experimental research will lead to a substantial improvement of soil carbon models such as the RothC model developed at RR]. Each compartment in the model decomposes by a first-order process with its own characteristic rate. The IOM compartment is resistant to decomposition. The model adjusts for soil texture and its changes by altering the partitioning between CO2 evolved and (BIO+HUM) formed during decomposition, rather than by using a rate modifying factor, such as that used for temperature. Moreover, total CO2 effluxes are largely controlled by root respiration, and microbial respiration of soil organic matter including rhizospheric organic carbon and all of these processes are highly sensitive to soil structure. In this proposed research, we therefore hypothesize that soil structure change is strongly linked to soil gas generation. We will develop and implement sensor systems that measure both, which in turn will allow us to quantify the link. These new models will in the future allow the effects of soil management on carbon dynamics to be predicted and hence give an understanding of the impact of different soil management strategies (e.g. tillage) on soil sustainability.
The research will complement ongoing field research at RR supported by the BBSRC in the National Capability scheme and in ISP funding streams; especially on the delivery of nutrients to plants. The processes to be studied in the project are expected to lead to improved formulations to include multi-scale, multi-physics under development at RR by: (1) more rationally representing the coupled surface-subsurface processes, (2) including vegetation hydrodynamics and carbon and nutrient allocation, and (3) incorporating soil and genome-enabled subsurface reactive transport models that have explicit and dynamic microbial representation.
The project will lead to the development of spatially-distributed sensing systems in the field that can (1) sense changes in soil stricture and (2) link these changes to fluxes of N2O, CH4, CO2 and O2 into and from soils.
Planned Impact
The vision for this research and technology development is to improve the scientific understanding of how carbon loading from vegetated land occurs at field scale using innovative integrated distributed sensor technologies to monitor relevant subsurface soil parameters and variables. Our understanding of the effects of soil management on carbon cycling and the emission of major greenhouse gases is limited because we do not have the tools to make spatially distributed measurements at the field and landscape scale of gas concentration in soil. Furthermore, these gas concentration data need to be linked to soil structure and soil water content at various scales, since together these soil factors control the generation of greenhouse gases. Models of soil structure relating gas evolution to water content have been developed, but they cannot be applied to the field scale because of a lack of data. We will use changes in strain, measured by a distributed fiber optic system, to infer changes in soil structure, due to deformation caused by either traffic or the effects in soil drying and shrinkage. We expect that the measurements of the changes in soil strain enables us to infer changes in porosity and together with soil water content, provide inputs to models to allow greenhouse gas concentrations to be predicted and compared with measured data. This proposed sensing technology will lead to a step change in environmental monitoring, and substantially improve our understanding of how to manage land to reduce emissions of major greenhouse gases.
The focus is how the measurements of parameters that control the processes in coupled land and atmospheric systems lead to better insights to processes occurring at multiple scales varying from macroscopic to field scales, which in turn contributes to improving models of carbon loading to the atmosphere. This research converges to the development of innovative technologies for accurate measurements of critical soil-water parameters at low-cost at the field scale. As the fundamental issue that is addressed is related to carbon loading in the context of climate change, the impacts are very broad and significant. The developed technology will allow for the deployment of sensors in large geographical areas efficiently to gather data at unprecedented spatial scales and resolutions that are infeasible using point measurements alone. These types of data will be of use to other researchers involved in similar investigations of coupled porous media-free flow systems. The outreach strategy is focused on engaging with the wider community and the profession to raise awareness of the issues and provide tools to explore solutions. This project will educate and train graduate students and interns who will gain both experimental and modeling skills in coupled soil-plant-atmosphere systems, preparing them for a future in academia, research, or industry.
Dissemination efforts will be targeting different groups through a variety of approaches. The project website will provide a central location to access all the activities, tools, and news. A central section of the site will provide information on the project and outcomes, with updates on the ongoing activities. We will have an App that show the data from the sensor systems in the proposed experiments. The information gathered by the network of our sensor systems, once operational, will be accessible on the web in a similar manner. The users will be able to select specific stations and review the reading, historical records, and download the information. A simplified tool will be available on the website to explore future scenarios based on RothC. The app can be used as a valuable interface to access and manipulate data based on the needs of the planned learning activities. Allowing students to process and interpret actual data can be an enriching experience. Our diverse leadership team can also provide excellent role models for young people.
The focus is how the measurements of parameters that control the processes in coupled land and atmospheric systems lead to better insights to processes occurring at multiple scales varying from macroscopic to field scales, which in turn contributes to improving models of carbon loading to the atmosphere. This research converges to the development of innovative technologies for accurate measurements of critical soil-water parameters at low-cost at the field scale. As the fundamental issue that is addressed is related to carbon loading in the context of climate change, the impacts are very broad and significant. The developed technology will allow for the deployment of sensors in large geographical areas efficiently to gather data at unprecedented spatial scales and resolutions that are infeasible using point measurements alone. These types of data will be of use to other researchers involved in similar investigations of coupled porous media-free flow systems. The outreach strategy is focused on engaging with the wider community and the profession to raise awareness of the issues and provide tools to explore solutions. This project will educate and train graduate students and interns who will gain both experimental and modeling skills in coupled soil-plant-atmosphere systems, preparing them for a future in academia, research, or industry.
Dissemination efforts will be targeting different groups through a variety of approaches. The project website will provide a central location to access all the activities, tools, and news. A central section of the site will provide information on the project and outcomes, with updates on the ongoing activities. We will have an App that show the data from the sensor systems in the proposed experiments. The information gathered by the network of our sensor systems, once operational, will be accessible on the web in a similar manner. The users will be able to select specific stations and review the reading, historical records, and download the information. A simplified tool will be available on the website to explore future scenarios based on RothC. The app can be used as a valuable interface to access and manipulate data based on the needs of the planned learning activities. Allowing students to process and interpret actual data can be an enriching experience. Our diverse leadership team can also provide excellent role models for young people.
Publications
Gao Y
(2022)
Different Responses in Root Water Uptake of Summer Maize to Planting Density and Nitrogen Fertilization.
in Frontiers in plant science
Huang Z
(2023)
A new concept for modelling the moisture dependence of heterotrophic soil respiration
in Soil Biology and Biochemistry
Li H
(2022)
A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media
in Computer Methods in Applied Mechanics and Engineering
Reid TE
(2021)
Inorganic Chemical Fertilizer Application to Wheat Reduces the Abundance of Putative Plant Growth-Promoting Rhizobacteria.
in Frontiers in microbiology
Wang F
(2022)
Evolution of the transport properties of soil aggregates and their relationship with soil organic carbon following land use changes
in Soil and Tillage Research
Zhang X
(2021)
The effects of long-term fertilizations on soil hydraulic properties vary with scales.
in Journal of hydrology
Zhang X
(2022)
An overlooked mechanism underlying the attenuated temperature response of soil heterotrophic respiration
in Journal of The Royal Society Interface
Zhang Y
(2021)
Comparison of soil tortuosity calculated by different methods
in Geoderma
| Description | In the context of global warming, whether soils will function as a carbon source or sink depends on the balance between carbon input from plant residues and carbon output through microbial respiration. The uncertainties in predicting this balance stem largely from the limited mechanistic understanding of the factors regulating microbial respiration in response to environmental changes. Since microbes decompose soil organic matter and release CO2, CH4, and N2O into the atmosphere, research over the past decades has focused predominantly on soil microbiology. This has led to calls for increasing representation of microbial traits in global soil organic carbon (SOC) models to improve accuracy and reliability, overlooking the critical role of other processes. Public concern regarding SOC stocks relates to their response to environmental changes at national and continental scales. However, because microbes in soil are sparsely distributed, their activity and respiration are primarily controlled by their immediate surroundings, which are regulated by soil structure and the physical processes occurring in the pore space. In terrestrial systems, plant roots also respire and influence soil structure, competing with microbes for dissolved O2 and thereby affecting microbial respiration responses to environmental changes. These microscopic processes underpin the relationships observed at larger scales between soil respiration and environmental factors. Explicitly incorporating soil structure, microbial distribution, and associated microscopic physical processes into SOC models is essential for accurately simulating SOC dynamics. However, this remains a major challenge due to the complexity of these interactions. We made a substantial breakthrough to fill this gap. We have made a substantial breakthrough in addressing this gap. Our research has led to the development of a new framework for modeling root and microbial respiration within the soil pore space, which we have embedded into a larger model to simulate heterotrophic and autotrophic respiration throughout the soil profile. A key distinction in our approach is separating root respiration from microbial respiration, as the latter determines whether soil acts as a carbon source or sink in the context of climate change. Notably, our model reconciles inconsistencies in the temperature sensitivity of soil respiration observed across different experiments, explaining when and why warming attenuates, amplifies, or even reduces soil respiration as temperatures rise. We also show that the presence of roots mitigates the response of microbial respiration to temperature increases and demonstrate that it is not feasible to experimentally derive a universal temperature or moisture function for predicting SOC stock responses to environmental and management changes. Our specific key achievements include: 1) Development and validation of multiscale models incorporating pore-scale soil structure, microbial activity, and physical processes to simulate heterotrophic and autotrophic respiration, as well as CH4 oxidation in the soil profile. 2) Application of these models to various experiments to simulate CO2 emissions and CH4 oxidation, demonstrating that all factors influencing soil respiration and SOC decomposition interact nonlinearly. That is, a change in one factor affects the response of soil respiration to changes in others. It is this nonlinear interaction that make predictions of SOC stock dynamics under environmental change difficult. 3. Fibre optic cables suitable for measuring strain and temperature changes in arable soils have been identified through laboratory and field measurements. These selected cables have been installed in several field trials sown with spring wheat, beans, and grass, or maintained as bare fallow. Optical fibre data enabled the observation of changes in strain signals related to crack development in the wheat field trial at Rothamsted. 4. Laboratory experiments carried out at Rothamsted found evidence of temperature adaptation by microbes which influenced the respiration patterns in soil at different moisture and soil compactions. As soil structure and physical processes also affect the response of microbial respiration to temperature, we have developed methods to distinguish the relative significance of microbial acclimation and physical processes in this phenomenon. 5. We have established Gasmet to measure the concentrations of N2O and CO2 at different soil depths in the field and have developed methods to convert these concentrations to gas flux and link it to gas emission rate at different soil depths. This improved our study of subsoil carbon dynamics. |
| Exploitation Route | The new framework for modelling autotrophic and heterotrophic respiration, along with atmospheric methane oxidation in upland soils, has broader implications for the climate change research community and the development of next-generation SOC models. |
| Sectors | Agriculture Food and Drink Environment |
| Description | More non-academic outputs will follow in time. However, we have already made the link between the importance of soil structure in regulating greenhouse gas emissions. |
| First Year Of Impact | 2022 |
| Sector | Agriculture, Food and Drink,Environment |
| Impact Types | Societal |
| Title | Model for soil respiration in whole-soil profile |
| Description | We developed a much improved model by incorporating physical processes at different scales to model soil respiration from whole-soil profile. The model reconciles the unexplained variations in the temperature sensitivity of soil respiration to warming measured from different experiments. |
| Type Of Material | Model of mechanisms or symptoms - non-mammalian in vivo |
| Year Produced | 2023 |
| Provided To Others? | Yes |
| Impact | It will improve our capacity to predict the response of soil organic carbon to global warming |
| Title | Model for in situ soil respiration |
| Description | It is a model with support of x-ray images of soil obtained from different fields |
| Type Of Material | Computer model/algorithm |
| Year Produced | 2024 |
| Provided To Others? | Yes |
| Impact | It will improve our capacity to predict the response of carbon budget to global warming |
| Description | Collaboration with Chinese Academy of Agricultural Sciences on the impact of soil structure on soil carbon and nitrogen dynamic |
| Organisation | Chinese Academy of Agricultural Sciences |
| Country | China |
| Sector | Academic/University |
| PI Contribution | This is an international project funded by the Foreign Bureau of Chinse government, aimed to strengthen international collaboration. It is built on our research and findings on the importance of soil physical processes in regulating the response of soil respiration to warming. |
| Collaborator Contribution | Our collaborators run a series of field experiments to investigate different agricultural treatments on greenhouse gas emissions from soils. |
| Impact | There are two joint papers: 1) Root phenotyping and root water uptake calculation using soil water contents measured in a winter wheat field (2023), Agricultural water management, DOI10.1016/j.agwat.2023.108607 2) A new concept for modelling the moisture dependence of heterotrophic soil respiration (2023), Soil Biology & Biochemoistry, DOI10.1016/j.soilbio.2023.109147 |
| Start Year | 2023 |
| Description | Collaboration with Sichuan University in China on how root-soil interactions affect soil structure, root growth, root water uptake and the consequence |
| Organisation | Sichuan University of Science and Engineering |
| Country | China |
| Sector | Academic/University |
| PI Contribution | This is a joint project funded by the Royal Society of London (£12000) and the Natural Science Foundation of China (100000 Yuan). It is originated from our findings that soil structure and associated physical processes are important drivers of soil carbon and nitrogen cycling and that topsoil water content is not only a resource, but also functions as a cue coordinating how crop takes up water from different soil depths. |
| Collaborator Contribution | Our Chinese collaborator is the lead in water-crop interaction, and their work on modeling water flow in soil-root-plant-atmosphere systems contributes to the success of this collaboration. |
| Impact | There are two papers under review |
| Start Year | 2023 |
| Title | A model for simulating in situ soil respiration |
| Description | The software is written in Matlab for modelling soil respiration along soil profile. |
| Type Of Technology | Software |
| Year Produced | 2023 |
| Open Source License? | Yes |
| Impact | It will improve our capacity to model the response of carbon budget to global warming |
| Description | Dissemination of project findings |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Professional Practitioners |
| Results and Impact | The activities are mainly talking with a member of a company about dissemination of project findings. We submitted two unsuccessful proposals to Innovation of UKRI. |
| Year(s) Of Engagement Activity | 2023 |
| Description | Workshop for sensor use in soil research |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | This is a workshop involving farmers, industry and academia to discuss the use of sensors and imaging technologies in soil and agricultural research. |
| Year(s) Of Engagement Activity | 2024 |
