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Nitrogen powering life in an active serpentinising system - an analogue to early life on Earth

Lead Research Organisation: University of Southampton
Department Name: Sch of Ocean and Earth Science

Abstract

How did life begin on Earth? While disagreements remain, one thing for certain is that the first life needed water, a source of energy and non-biologically made organic compounds; and the best candidate for the first life was a microbe. To find these on early Earth, the best place to look would be where water met unreacted rocks from the Earth's interior. Mantle rocks called peridotites, normally residing >6 km below the seafloor or 40 km below land surface, could be brought to surface by overthrust along plate boundaries due to plate tectonics. These peridotites are a reservoir of reduced metallic components, especially iron, which react with water when exposed to form gaseous hydrogen (H2). This then triggers a series of spontaneous reactions that release energy and turn carbon dioxide (CO2) into bicarbonate and methane (CH4), and other simple organic compounds. These reactions, collectively known as 'serpentinisation', thus provide the ideal setting for the emergence of life. Today, these occur in low-temperature hydrothermal systems on the seafloor, or in 'ophiolites', ancient ocean crust and upper mantle that got uplifted on land such as that found in the Sultanate of Oman. These are likely the best modern analogues of the first cradle of life. Many studies have been conducted to date using these systems to try to understand how the biosphere has been evolving on Earth and perhaps on other planets.

Missing in all these investigations, however, is the source of nitrogen (N), the key element used to make DNA, enzymes and proteins. Biological growth in many ecosystems today is limited by the availability of N. Although substantial amounts of N have been present in the atmosphere as gaseous N2 since early Earth, for life to use this N the strong triple bond of N2 has to be broken, and it takes considerable energy. N could also have come as nitrite (NO2) and nitrate (NO3), but both first had to be made by lightning from atmospheric N2, and then rained into the ocean before coming in contact with exposed mantle peridotites. Recently, rock analyses have found that ammonium (NH4+) sometimes replaces certain metals (e.g. potassium) in minerals such that the solid Earth holds ~7 times the N as the atmosphere. Hence, if life can tap into this immense N source, the early biosphere would not be N-limited.

On the other hand, N can exist in several forms of varying electrochemical potentials, and so its many transformations can occur spontaneously with other chemicals to generate energy to support life. Most notably, NO3 is the first-choice alternative used for breathing (respiration) when oxygen runs out, thereby burning 'food' (organic carbon) into CO2 to obtain the necessary energy for life metabolisms. Meanwhile, some microbes may harness the energy from the reactions between NO2 and NH4+ or CH4 to make their own food from CO2, akin to plants performing photosynthesis but with chemical energy instead of sunlight. Therefore, as various N-forms are present in modern subsurface serpentinising systems, various N-transformations may occur to power the microbiome within. The activities of these reactions and their impacts on the environment have never been assessed, nonetheless.

This project seeks to examine how subsurface biosphere acquires N, and how subsurface N-cycling operates and interacts with the subsurface biosphere in a serpentinising system. We will use the rare heavy form of N -15N- to track N-transformations by microbes, and 15N-content in rocks and fluids as tracers, combined with state-of-the-art bioimaging and gene expression, to assess how microbes obtain their cellular N, and to what extent N-transformations are 'actively' powering subsurface life. We will use the Oman ophiolite, the world's largest, best exposed block of oceanic crust and upper mantle as a model active serpentinising system, given its easy access and the newly drilled deep boreholes and drill cores made available by the Oman Drilling Project.

Publications

10 25 50
 
Description Subsurface serpentinization generates heat, hydrogen, methane, simple organic compounds, and establishes redox and pH gradients that could support early life on Earth1. While nitrogen is essential for life, how early life accessed it remains unclear. Here, we conducted stable isotope tracer experiments and molecular biological analysis to explore active microbial transformations of nitrogen and microbial diversity within the Samail Ophiolite, one of the world's largest serpentinizing system. We found multiple nitrogen species coexisting in borehole fluids, with diverse cycling processes sustaining the subsurface microbiome by occupying distinct niches. Ammonium, likely from rocks and minerals, predominated in hyperalkaline, reduced fluids , while nitrate was enriched in oxidised, slightly alkaline conditions. Under reduced conditions, ammonium and dinitrogen gas represented the top two nitrogen sourcesfor microbial biomass, while nitrogen fixation predominated in oxidised conditions. Energy-yielding nitrification and nitrate reduction were enhanced in oxidised fluids, whereas dissimilatory nitrate reduction to ammonium occurred only in reduced settings. Moreover, methane stimulated nitrous oxide production from nitrite sixfold. These findings reveal active differential microbial nitrogen cycling along pH/redox gradient within this serpentinising system, with strong implications on the biogeochemical processes that may have supported early life on Earth and perhaps also other celestial bodies.
Exploitation Route This is the first time that microbial activities have been directly assessed at near in-situ conditions, and near real-time. The findings from this study may shed light on how early life on Earth acquired a key ingredient for life and the processes and thus pathways they relied on to proliferate. Consequently, this could help us understand and guide the search for life in other celestial bodies.
Sectors Education

Environment

Other

 
Description Integrated Masters (MSci) research training
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
Impact Research student acquired skills in molecular biology lab work, next-generation sequencing, bioinformatics and big-data analyses. This thesis project formed 60% of their final-year credit and has earned them a first-class degree. They have subsequently joined the marine/ environmental technology sector in industry.
 
Description Templeton Geomicrobiology Laboratory 
Organisation University of Colorado Boulder
Country United States 
Sector Academic/University 
PI Contribution Field sampling campaigns in 2024-5 that provide metadata for the biogeochemical and geochemical background of the subsurface system of the ophiolite under investigation, as well as microbial nitrogen-cycling activity, microbial diversity and community structure and metatranscriptomics dataset.
Collaborator Contribution Field sampling expertise, additional complementary sampling consumables and equipment, previous background biogeochemical and metagenomics data.
Impact Sample analyses are ongoing, and thus data are still being generated.
Start Year 2023
 
Description Pint of Science talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact 'Pint of Science' are science-themed talks given to general public over drinks in local pubs. Our phd student working on this project gave a talk on the Origin of Life, linking how the work on this current project could implicate what it could be in the early Earth system.
Year(s) Of Engagement Activity 2024
 
Description Presentation at Sultan Qaboos University in Muscat, Oman 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact A presentation of our project and our preliminary findings to researchers (faculty members, postdocs and research students) at the Department of Biology, Sultan Qaboos University in Muscat, Oman - at the end of one of our field sampling trips to Oman
Year(s) Of Engagement Activity 2024