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Fish gut carbonates and the control of ocean alkalinity

Lead Research Organisation: UNIVERSITY OF EXETER
Department Name: Biosciences

Abstract

The global oceans currently absorb ~30% of anthropogenic CO2 emissions. The carbon cycle that regulates this ocean-atmosphere CO2 exchange, and the associated vertical distribution of dissolved carbon and alkalinity that influences the ocean's absorption capacity, depends on several processes. These are described as a series of interacting "pumps": a physical/chemical solubility pump; a biological 'soft tissue' pump; and a calcium carbonate pump. Understanding these three pumps, how they interact, and their atmospheric CO2 feedbacks is especially critical for accurate predictions of how the marine carbon cycle and global climate will change in the future. Calcium carbonate is a white, chalky mineral produced by a range of marine organisms. Importantly, when it dissolves it increases the alkalinity of seawater, which can reduce the seawater CO2 concentration below atmospheric CO2 levels and 'suck' anthropogenic CO2 from the atmosphere. Knowing exactly where it dissolves (how near the ocean surface) is therefore key to understanding the role this calcium carbonate pump plays in regulating ocean chemistry and atmospheric CO2.

The operation of the calcium carbonate pump not only depends on the production rate but also the types of carbonate minerals that are produced by marine organisms, the rate at which they sink, and how rapidly these carbonate minerals then dissolve. Most ocean carbon cycle models make the assumption that carbonate production is dominated by the plankton and coccolithophores (microscopic algae). However, we now know that very large amounts of carbonate are excreted by marine bony fish (teleosts). This carbonate, which we now also know is mineralogically diverse depending on the fish species, is continuously produced in the intestines of fish and excreted as waste. The potential significance of this process to the marine CaCO3 pump was recognised in an initial modelling exercise led by PI Wilson (Science, 2009) which conservatively suggested that fish may account for at least 3-15% of total marine CaCO3 production globally, and realistically as much as 45%. Since that first modelling exercise the science behind this process has advanced hugely. As a group (and through the work of others) we now know that fish produce a hugely diverse range of carbonate mineral types, which existing knowledge would suggest should dissolve at very different rates. As a result, the assumptions in the first modelling efforts that fish produce uniform and relatively soluble carbonate types are no longer valid.

Whilst we can already address some of the knowledge gaps, there is little or no data for fish from families that comprise ~94% of global fish biomass - including almost no data for mesopelagic fish that alone account for at least 60% of fish biomass. The daily vertical migration of their immense biomass is hypothesised to drive a novel "upward alkalinity pump", which may provide an important offset to the downward transport of alkalinity driven by other established processes. Also, we now have good evidence to show that production rates by fish vary with metabolic rate (which is greatest in the globally significant active epipelagic fishes), and importantly also depending upon feeding and diet (especially the calcium content of the diet). Thus, again, necessary assumptions in early models that all fish produce carbonate at the same rate are no longer realistic to use for modelling. Over and above these issues we also have little to no data on the rates at which these carbonates sink in the oceans or dissolve. The aim of this project is therefore to deliver new empirical data on fish carbonate production, mineralogies, solubilities and sinking rates to inform the first spatially- and mineralogically-resolved global production estimates, thus enabling us to parameterise models assessing fish contributions to the marine carbon cycle both under present day conditions, and for climate change scenarios in the future.

Publications

10 25 50
 
Description OBJECTIVE 1 (Work Package 1):
Lab experiments were completed by December 2023 in which two active species (sea bass and sea bream) were fed diets supplemented with different calcium sources (control, calcium phosphate (mimicking bony fish prey) and calcium phosphate (mimicking shelled invertebrate prey). Food intake rate and faecal excretion rate was quantified in individual fish for both species and all diet treatments. Excreted gut carbonates were collected and processed/preserved for analysing total carbonate content (and excretion rate), as well as their composition (calcium, magnesium, phosphate and carbonate), crystal morphology (SEM), mineral type (FTIR), and solubility.
In addition, an extra experiment (not previously planned in the proposal) was completed with the same two species (sea bass and sea bream) to understand the timescale of formation of intestinal carbonate precipitates following the ingestion of a single meal. This will be potentially important in interpreting data collected from frozen samples of wild-caught mesopelagic fishes in WP2.

OBJECTIVE 2 (Work Package 2):
Lab-techniques were successfully developed to characterise the morphology, mineralogy and elemental composition of gut carbonates produced by epipelagic and mesopelagic fishes, in addition to their solubility and dissolution rate. These techniques have been used on gut carbonate samples obtained from the intestines of frozen samples of wild-caught fish obtained from the US, Gran Canaria, Germany and the UK via existing project partners named in the original NERC proposal. However, in December we also received mesopelagic fish samples from a new project partner (Institute of Marine Research in Norway). This is very positive for the project as it significantly expands the range of latitudes for these mesopelagic fish samples, but also this latest samples are much larger which enables more to be measured on each fish.
Exploitation Route Ultimately the outputs will be taken forward and used to update models of global ocean alkalinity and carbon cycling.
Sectors Aerospace

Defence and Marine

Environment

 
Description Blue Carbon Particles in Bermuda Atlantic Sediment Traps 
Organisation Bermuda Institute of Ocean Sciences
Country Bermuda 
Sector Academic/University 
PI Contribution Bermuda is central to a breakthrough discovery regarding the surprising and globally important role of fish in regulating marine carbon cycles. In deep Bermudan sediment traps we have discovered blue-coloured carbon particles that are produced and excreted by the guts of fish. This sheds new light on a novel way fish may remove massive amounts of atmospheric CO2 and restore buffering (alkalinity) to surface oceans. A revised version of a manuscript is currently being reviewed by Global Biogeochemical Cycles, and a proposal for funding has been submitted to a philanthropic source from collaborators at the Exeter University (UoE - Lead PI), Bermuda Institute of Ocean Sciences (BIOS), Woods Hole Oceanographic Institute (WHOI), Marine Biological Laboratory (MBL, Woods Hole). The proposal aims to a) explain the enigmatic blue colouration of these carbon particles, b) greatly expand the range of Bermuda sediment traps examined, c) identify key fish species responsible around Bermuda, and d) significantly improve the accuracy of global models of ocean chemistry and its influence on atmospheric CO2.
Collaborator Contribution Collaborators at BIOS, WHOI and MBL have provided sample material and data analysis that provides the first evidence of fish gut carbonates from the open ocean environment. The location and nature of these carbonates has raised new questions about the role of fish carbonates in global ocean cycling and surface ocean chemistry.
Impact A revised version of a manuscript is currently being reviewed by Global Biogeochemical Cycles: Hashim, MS, Conte, M, Salter, MA, Pedrosa-Pamies, R, Weber, JC, Hayden, M, Wilson, RW, Perry, CT, Crowley, SF, Dennis, PF, Bish, D, and Subhas, AV (2024). Fish Carbonates in the Open Ocean and Their Role in the Carbon Cycle. In review at Global Biogeochemical Cycles.
Start Year 2024
 
Description Blue Carbon Particles in Bermuda Atlantic Sediment Traps 
Organisation Marine Biological Laboratory
Country United States 
Sector Academic/University 
PI Contribution Bermuda is central to a breakthrough discovery regarding the surprising and globally important role of fish in regulating marine carbon cycles. In deep Bermudan sediment traps we have discovered blue-coloured carbon particles that are produced and excreted by the guts of fish. This sheds new light on a novel way fish may remove massive amounts of atmospheric CO2 and restore buffering (alkalinity) to surface oceans. A revised version of a manuscript is currently being reviewed by Global Biogeochemical Cycles, and a proposal for funding has been submitted to a philanthropic source from collaborators at the Exeter University (UoE - Lead PI), Bermuda Institute of Ocean Sciences (BIOS), Woods Hole Oceanographic Institute (WHOI), Marine Biological Laboratory (MBL, Woods Hole). The proposal aims to a) explain the enigmatic blue colouration of these carbon particles, b) greatly expand the range of Bermuda sediment traps examined, c) identify key fish species responsible around Bermuda, and d) significantly improve the accuracy of global models of ocean chemistry and its influence on atmospheric CO2.
Collaborator Contribution Collaborators at BIOS, WHOI and MBL have provided sample material and data analysis that provides the first evidence of fish gut carbonates from the open ocean environment. The location and nature of these carbonates has raised new questions about the role of fish carbonates in global ocean cycling and surface ocean chemistry.
Impact A revised version of a manuscript is currently being reviewed by Global Biogeochemical Cycles: Hashim, MS, Conte, M, Salter, MA, Pedrosa-Pamies, R, Weber, JC, Hayden, M, Wilson, RW, Perry, CT, Crowley, SF, Dennis, PF, Bish, D, and Subhas, AV (2024). Fish Carbonates in the Open Ocean and Their Role in the Carbon Cycle. In review at Global Biogeochemical Cycles.
Start Year 2024
 
Description Blue Carbon Particles in Bermuda Atlantic Sediment Traps 
Organisation Woods Hole Oceanographic Institution
Country United States 
Sector Charity/Non Profit 
PI Contribution Bermuda is central to a breakthrough discovery regarding the surprising and globally important role of fish in regulating marine carbon cycles. In deep Bermudan sediment traps we have discovered blue-coloured carbon particles that are produced and excreted by the guts of fish. This sheds new light on a novel way fish may remove massive amounts of atmospheric CO2 and restore buffering (alkalinity) to surface oceans. A revised version of a manuscript is currently being reviewed by Global Biogeochemical Cycles, and a proposal for funding has been submitted to a philanthropic source from collaborators at the Exeter University (UoE - Lead PI), Bermuda Institute of Ocean Sciences (BIOS), Woods Hole Oceanographic Institute (WHOI), Marine Biological Laboratory (MBL, Woods Hole). The proposal aims to a) explain the enigmatic blue colouration of these carbon particles, b) greatly expand the range of Bermuda sediment traps examined, c) identify key fish species responsible around Bermuda, and d) significantly improve the accuracy of global models of ocean chemistry and its influence on atmospheric CO2.
Collaborator Contribution Collaborators at BIOS, WHOI and MBL have provided sample material and data analysis that provides the first evidence of fish gut carbonates from the open ocean environment. The location and nature of these carbonates has raised new questions about the role of fish carbonates in global ocean cycling and surface ocean chemistry.
Impact A revised version of a manuscript is currently being reviewed by Global Biogeochemical Cycles: Hashim, MS, Conte, M, Salter, MA, Pedrosa-Pamies, R, Weber, JC, Hayden, M, Wilson, RW, Perry, CT, Crowley, SF, Dennis, PF, Bish, D, and Subhas, AV (2024). Fish Carbonates in the Open Ocean and Their Role in the Carbon Cycle. In review at Global Biogeochemical Cycles.
Start Year 2024
 
Description Cape Eleuthera Institute, Bahamas 
Organisation Cape Eleuthera Institute
Country Bahamas 
Sector Public 
PI Contribution Analyzing the gut carbonate contents from mesopelagic fish specimens collected by this partner.
Collaborator Contribution Providing frozen specimens of mesopelagic fish collected from various parts of the global oceans.
Impact N/A
Start Year 2022
 
Description Department of Marine Biology, Texas A&M University, USA 
Organisation Texas A&M University
Country United States 
Sector Academic/University 
PI Contribution Analyzing the gut carbonate contents from mesopelagic fish specimens collected by this partner.
Collaborator Contribution Providing frozen specimens of mesopelagic fish collected from various parts of the global oceans.
Impact N/A
Start Year 2022
 
Description Marine Biological Association, Plymouth, UK 
Organisation Marine Biological Association
Country United Kingdom 
Sector Academic/University 
PI Contribution Analyzing the gut carbonate contents from epipelagic fish specimens collected by this partner.
Collaborator Contribution Providing live specimens of epipelagic fish collected from UK waters
Impact N/A
Start Year 2022
 
Description Mesopelagic fish carbonates (Atlantic) - Universidad de Las Palmas de Gran Canaria and Institute of Sea Fisheries Hamburg 
Organisation University of Las Palmas de Gran Canaria
Department Institute of Oceanography
Country Spain 
Sector Academic/University 
PI Contribution Samples of the gut contents of mesopelagic fish from the mid Atlantic (see below) were obtained from freshly thawed fish at Exeter. Otoliths were also be sampled together with organic tissue (white muscle) to provide comparison of the carbonate chemistry within otoliths and intestinal carbonates, and to compare stable isotopes signatures of C and O in future work.
Collaborator Contribution Through collaboration with Prof. Santiago Hernández León (Instituto de Oceanografía, Universidad de Las Palmas de Gran Canaria), mesopelagic fish were sampled at a wide range of depths (surface to 1000 m deep) in the mid Atlantic by collaborators from Gran Canara during a multi-national research cruise project based in the Atlantic - "Migrants and Active Flux In the Atlantic ocean" in the early part of 2015. Samples were frozen to preserve gut carbonate content and then shipped on dry ice to Exeter once the ship returned to port.
Impact Data still being analysed. No outputs yet.
Start Year 2022
 
Description Mesopelagic fish collection (N. Atlantic) Institute of Marine Research (Norway) 
Organisation Norwegian Institute of Marine Research
Country Norway 
Sector Academic/University 
PI Contribution Analyzing the gut carbonate contents from mesopelagic fish specimens collected by this partner.
Collaborator Contribution Providing frozen specimens of mesopelagic fish collected from various regions in the North Atlantic ocean, particularly around Norway and Iceland.
Impact No outputs yet, samples still being analysed.
Start Year 2023
 
Description Ocean Conservation Trust, Plymouth, UK 
Organisation National Marine Aquarium
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Analyzing the gut carbonate contents from epipelagic fish specimens collected with the help of this partner.
Collaborator Contribution Assisting with information about sources of live specimens of epipelagic fish collected from UK waters
Impact N/A
Start Year 2022
 
Description Southern Inshore Fisheries and Conservation Authority, Poole, UK 
Organisation Southern Inshore Fisheries & Conservation Authority
Country United Kingdom 
Sector Public 
PI Contribution Analyzing the gut carbonate contents from epipelagic fish specimens collected by this partner
Collaborator Contribution Providing live specimens of epipelagic fish collected from UK waters
Impact N/A
Start Year 2022
 
Description BIO-CARBON 2024 Annual Science Meeting (27-29th February 2024 - National Oceanography Centre, Southampton) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Prof. Rod Wilson presented an update on the "Fish Gut Carbonates" project to the BIO-CARBON consortium. The wider meeting discussed the future NERC-funded cruises and complementarity between the various BIO-CARBON projects. Early career researchers from Exeter (PDRA Dr. Mike Salter and PG student Aidan Donnelly) also attended the meeting and engaged in ECR discussions and formed new collaborative partners.
Year(s) Of Engagement Activity 2024
URL https://bio-carbon.ac.uk/news/bio-carbon-2024-annual-science-meeting
 
Description SEB (Society for Experimental Biology) - Centenary Conference Edinburgh (4-7th July 2023). Plenary Speaker in "100 Years of SEB" Session (4/5th July 2023). "Fish gut calcification: multi-faceted physiology and role in ocean chemistry" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact A meeting to celebrate 100 years of the Society for Experimental Biology (SEB), an international society. This Centenary Conference took place in Edinburgh (4-7th July 2023).
I was invited as Plenary Speaker in the "100 Years of SEB" Session (4/5th July 2023). My talk was on "Fish gut calcification: multi-faceted physiology and role in ocean chemistry". It was a hybrid meeting of in person (~100 delegates) and online (several 100). The audience was mainly academic researchers, including postgrad and undergrad students, but also included media and policy people.
Year(s) Of Engagement Activity 2023
URL https://underline.io/lecture/72648-fish-gut-calcification-multi-faceted-physiology-and-role-in-ocean...