Integrating top-down control by parasitic protists and fungi into the ecological dynamics of freshwater phytoplankton blooms
Lead Research Organisation:
Centre for Ecology & Hydrology
Department Name: Soils and Land Use (Wallingford)
Abstract
Freshwater lakes provide us with many services such as a supply of freshwater for our homes and recreation. Within freshwater lakes, microalgae, photosynthesising single cells, increase in numbers throughout the spring and summer. Different species of algae "bloom" at different times of the year and are usually a normal part of the lake ecosystem. However, sometimes these blooms can become a nuisance, produce toxic chemicals (such as blue-green algae), or simply turn the water a green pea soup colour, shading out other plants. Blooms of algae may impact on all life within the lakes. With increasing nutrient inputs from sewage and agriculture, increasing temperature and extreme whether events, algal blooms are happening more frequently and with longer duration. What controls these blooms is largely attributed either bottom-up factors (availability of light, temperature, nutrients) or top-down factor (predation and grazing by zooplankton). One less known top-down control of algae is parasitism. Algae are parasitised by many different organisms. The most well-known are tiny single-celled species of fungi called Chytrids that infect cells of algae killing them. There are also diverse groups of other life such as different species of single celled protozoa that may control algae numbers through parasitism. Many parasites of algae within the UK are not well known and only described from microscope observations in the last century. This project will use cutting edge DNA sequencing technology combined with microscopy and flow cytometry to identify and count parasites of algae within the lakes of Lake district UK. It will look at samples across different seasons and from 20 different lakes. It also will track parasite abundance and diversity across the lifetime of an algal bloom. The project will look at the impact these parasites have on blooms of algae, showing how their numbers increase and decrease in relation to their algal hosts. This will enable us to increase our knowledge of top-down controls on blooms of algae, learning more about their ecology and will helpi us to better understand, predict and manage algae and the health of freshwater ecosystems.
Publications
Thorpe A
(2024)
Biofilm DNA metabarcoding protocol v1
Warren J
(2024)
Influence of storage time on the stability of diatom assemblages using DNA from riverine biofilm samples
in Metabarcoding and Metagenomics
| Title | 18S rRNA gene libraries from 2021/2022 Lakes tour |
| Description | High-throughput sequencing dataset of a partial fragment of the 18S rRNA gene from 100 samples of lakes collected in range of lakes in the lake district in four different seasons. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2023 |
| Provided To Others? | No |
| Impact | For the first time we have characterised phytoplankton and their associated protist and fungal communities with UK lakes. |
| Title | Sequence data from Lake district on Phytoplankton communites, protist communities and Chytrid & Aphelid parasites |
| Description | 18S, ITS, rbcL, Cercozoa specific, Chytrid specific metabarcoding data. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | This is the first dataset to comprehensively characterise protist and fungi communities in UK lakes. |
| Description | Collaboration on Chytrid parasites in benthic lake and river systems & co-supervised PhD student |
| Organisation | Lancaster University |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Incorporating samples from a wider benthic study across the lake district catchment for analysis of total microbial communities and parasitic fungi and protists. Collaborating on PhD student supervision of a student looking at microbial cycling of dissolved organic carbon. Invitation to collaborate project partner on NERC pushing the frontiers grant application. |
| Collaborator Contribution | Provision of samples for analysis. Co-supervising a PhD student. Input into NERC pushing the frontiers grant application. |
| Impact | None yet |
| Start Year | 2023 |
| Description | Collaboration on microbial dissolved organic carbon (DOC) interactions in lakes |
| Organisation | University of Leeds |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Advising and collaborating Catherine Moody at the University of Leeds on sampling for DNA metabarcoding to analyse microbial communities in lakes and reservoirs. Submitting a NERC pushing the frontiers grant where Catherine Moody was named a project partner and gave input into the writing of the grant. |
| Collaborator Contribution | Invitation to a workshop on microbial interactions with dissolved organic carbon in lakes and reservoirs Collaboration on future publications Input into recent Pushing the frontiers grant submission. |
| Impact | None yet |
| Start Year | 2023 |
| Description | School visit (Stockport) |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Schools |
| Results and Impact | Talk for around 60 School children at local school on current research including the work of this grant. |
| Year(s) Of Engagement Activity | 2024,2025 |
