Does developmental plasticity influence speciation?

Lead Research Organisation: University of Leeds
Department Name: School of Earth and Environment

Abstract

Life is a journey. As we grow older, we change. Sometimes we respond in the spur of the moment. Occasionally, an event has long-lasting consequences in spite of any change in circumstance and shapes our outlook far into the future.

This future flexibility, or a lack thereof, also applies to the traits like size and weight that influence our daily risk of death and our reproductive success. Some of these traits retain flexibility throughout life, whereas others can only change in a fixed early window. As humans, we are far more likely to shift weight gain trajectories before six months of age than when older.

Any ability to flexibly adjust traits can boost survival chances in new or changing environments, but also provides the means to innovate and so express new combinations of traits. Flexibility as a means of innovation might promote the divergence of ancestral organisms into new species, but also might not because such flexibility would mean that species can already deal with whatever circumstances they encounter, which would in turn remove the pressure for any innovation to become hardwired into their DNA.

The long timescales over which this hardwiring plays out complicates collection of data. We don't know whether future flexibility or a lack of it is more likely to catalyse change into new species. In this project, we will contribute this increasingly requested data and therefore provide the first evidence if a lifetime of flexibility, or a stubborn refusal to change, influences the emergence of new species.

Planktonic foraminifera are single-celled organisms that live in vast numbers in all the world's oceans. While chemical analysis of their fossil remains has generated a remarkably continuous record of past climate change, each individual also retains a complete record of its size and shape at each stage along its journey through life.

These growth stages can be revealed by state-of-the-art imaging technology, which has sparked a digital revolution in how biologists study life on Earth. To study evolution, we need to study differences among lots of individuals. We need to know how and why these differences change through time. This need to measure lots of individuals means that the current practise of a person pointing and clicking on a computer screen to identify distinct parts is too slow. Computer programmes that provide a faster, more repeatable and less biased way of identifying and analysing such parts are now available, completing the toolkit needed to build big databases.

By bringing together lessons from diverse scientific disciplines, we propose to use the same fossil specimens to collate records of an individual's journey through life and the environment it experienced every step of the way, both of which were changing from day-to-day, millions of years ago.

While the fossil record of planktonic foraminifera provides the necessary timespan and abundance, new computer programmes and imaging technology complete the toolkit jigsaw to investigate for the first time if certain parts of an individual's journey through life are more influential than others in determining the eventual evolutionary destinations of its species.

Our unique, direct link between organism and environment lets us study the dynamic journey through life in the static death of the fossil record. The fundamental limitation to the current ways we study how new species emerge is the lack of repeated samples through time to follow the genesis of novel lifeforms, and explicitly targeting this limitation using state-of-the-art approaches from multiple scientific disciplines means we will deliver a breakthrough in attempts to answer one of the most fundamental of all biological questions: how do differences among individuals make differences among species?

Planned Impact

PISTON takes an unprecedented transdisciplinary approach to investigate how new species form. Species are the foundation of biodiversity. The House of Lords Systematics & Taxonomy review identified biodiversity's critical underpinning of an extensive array of natural environment research ranging from blue skies evolutionary questions, particularly into charismatic "missing links" that reveal how differences among individuals generate differences among species, to applied questions such as ecosystem service provision (i.e., the benefits we derive from natural ecosystems) and global health threat mitigation.

PISTON has been designed as a set of interrelated work packages that will integrate to more than the sum of their individual parts to impact policy, public health, industry and the general public. PISTON investigators are active in all these sectors and will build on and further develop existing relationships and activities.

Members of PISTON have a strong track record of contributing to Intergovernmental Panel on Climate Change (IPCC) reports. Our unprecedented data, focusing on the pivotal link between organism and environment and from the last interval when the world was 2-3 degrees warmer than it is today, can contribute to future IPCC reports in this area. Foster (Contributing Author) and Schmidt (Chapter Lead Author; Co-author of Summary for Policymakers) will co-ordinate impact in this area.

Proprietary versions of WP1 computer vision algorithms have successfully delineated the ball and socket of hip joints as a diagnostic to improve hip replacement therapy, which indicates their potential for wider healthcare benefits for the general public. The PISTON team has considerable experience working with industry (Sinclair with Nikon to develop bespoke biological and medical tools) and the public sector (Nixon on, e.g., automated gait recognition) and will draw on this experience to ensure the open-source PISTON outputs are carefully described, annotated and made accessible in toolbox form to the broadest possible community of end-users.

Taxonomic revisions through refined dating, age control and uncertainty in climate reconstructions will directly impact foraminiferal specialists in commercial operations, particularly the oil industry. The statistical approaches we propose minimise subjective choices, which adds repeatability and transparency across end-users. We will build on existing networks: Wade (NE/N017900) and Wilson (PI: NE/K007211 and NE/K014137; Co-I NE/M021254 and NE/L007452) have PetroStrat, Network Stratigraphic, Shell, RPS Energy and Neftex-Halliburton as named Industry Partners on current awards. Wade will act as Industry Impact Champion (1.5% costed time) to incorporate PISTON data and curate the Mikrotax illustrated online portal. In addition to working with External Advisory Board member Haydon Bailey (Network Stratigraphic) to deliver Industrial impact, we will invite further industrial partners to the second scientific scoping workshop in Year 3 (£2500 budgeted for one UK and one international).

All Research Staff will participate in Public Engagement activities during PISTON in areas of particular appeal to each individual. In particular, we will work with Ellen Dowell, a Science Communicator, interdisciplinary facilitator and current collaborator of PI Ezard (NE/J018163), to run interactive workshops in Einstein's Garden at the Green Man Festival in Year 3 (led by Aze), which we will then run subsequently at exhibitions through applications to the NERC Science Festival, Royal Society Summer School and local science festivals in our regions. These hands-on workshops will let festival-goers see evolution in action and contribute to an animated "flick book" style-film based on the divergence into new species (£3000 budgeted). This film will ensure legacy and impact beyond the festival fence.

Studentship Projects

Project Reference Relationship Related To Start End Student Name
NE/P019145/1 01/10/2017 31/03/2023
2514455 Studentship NE/P019145/1 01/02/2019 31/08/2022 Grace Lamyman
 
Description A new phylogeny (family tree) of the Cenozoic planktonic foraminifera has been produced highlighting the progress made in the last 12 years towards improving our knowledge of the evolutionary history and fossil record of this important group. - manuscript in prep

Two new species of planktonic foraminifera have been discovered - manuscript in prep

The evolutionary history of the planktonic foraminifera genera Globigerinella and Beella have be revisited and updated - manuscript in prep.
Exploitation Route This new phylogeny will provide the framework for the activities of the Neogene and Quaternary Planktonic Foraminifera Working Group, which is an international consortium of experts who are reviewing and revising the taxonomy of the Neogene and Quaternary planktonic foraminifera.
Sectors Environment,Other

 
Description This project has supported a variety of outreach activities aimed a highlighting the uses of microfossils Leeds PI Tracy Aze has received the Water Woman Award for Research Excellence
First Year Of Impact 2018
Sector Education,Culture, Heritage, Museums and Collections
Impact Types Societal

 
Description The Micropalaeontological Society Student Travel Awards
Amount £100 (GBP)
Organisation The Micropaleontological Society 
Sector Academic/University
Country United Kingdom
Start 12/2019 
End 12/2020
 
Title Functional trait database for planktonic foraminifera 
Description The PhD student has collated data and information on the function of planktonic foraminifera traits and has assigned these traits to three categories: known function, possible functional role, unknown functional affinity 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? No  
Impact The PhD student and I are putting together a manuscript about the function trait landscape of planktonic foraminifera for submission shortly. We will then be using this data to produce analyses investigating the recovery of disparity vs diversity in the aftermath of extinction, which will also be written up for publication. 
 
Description Neogene Planktonic Foraminifera Working Group 
Organisation Smithsonian Institution
Country United States 
Sector Public 
PI Contribution The Neogene Planktonic Foraminifera Working Group follows the activities of the Paleogene Planktonic Foraminifera Working Group, which has been active for over 25 years, dealing with comprehensive revisions to the taxonomy and biostratigraphy of Paleogene taxa. Atlases on Paleocene (Olsson and others, 1999), Eocene (Pearson and others, 2006), and Oligocene (Wade and others, 2018) planktonic foraminifera have already been published. The initiation of the Neogene Working Group has been supported by the PISTON grant as a PhD student was assigned to the project to work on alpha taxonomy, and this work feeds directly into the objectives and activities of the group. The group is now recognised by the International Commission on Stratigraphy and kick off meetings have taken place and sub-group activities have commenced. Meeting attendance by myself and the PhD student have been supported by PISTON travel funds, additionally PhD time and my time on the grant that were aimed at improving alpha taxonomy have been directly utilised by the Working Group, of which taxonomic review is the major focus.
Collaborator Contribution Meeting space has been provided by the Smithsonian Museum in Washington DC and by the department of Earth Sciences at the University of Edinburgh, which has facilitated group meetings to date. Additionally travel expenses to all meetings for the group members have been covered by individual group member funds, which is essential for maintaining the functioning of the group.
Impact The group has only been active for 10 months, so no output have been published at present.
Start Year 2019
 
Description Neogene Planktonic Foraminifera Working Group 
Organisation University of Edinburgh
Country United Kingdom 
Sector Academic/University 
PI Contribution The Neogene Planktonic Foraminifera Working Group follows the activities of the Paleogene Planktonic Foraminifera Working Group, which has been active for over 25 years, dealing with comprehensive revisions to the taxonomy and biostratigraphy of Paleogene taxa. Atlases on Paleocene (Olsson and others, 1999), Eocene (Pearson and others, 2006), and Oligocene (Wade and others, 2018) planktonic foraminifera have already been published. The initiation of the Neogene Working Group has been supported by the PISTON grant as a PhD student was assigned to the project to work on alpha taxonomy, and this work feeds directly into the objectives and activities of the group. The group is now recognised by the International Commission on Stratigraphy and kick off meetings have taken place and sub-group activities have commenced. Meeting attendance by myself and the PhD student have been supported by PISTON travel funds, additionally PhD time and my time on the grant that were aimed at improving alpha taxonomy have been directly utilised by the Working Group, of which taxonomic review is the major focus.
Collaborator Contribution Meeting space has been provided by the Smithsonian Museum in Washington DC and by the department of Earth Sciences at the University of Edinburgh, which has facilitated group meetings to date. Additionally travel expenses to all meetings for the group members have been covered by individual group member funds, which is essential for maintaining the functioning of the group.
Impact The group has only been active for 10 months, so no output have been published at present.
Start Year 2019
 
Description Schools Outreach Officer (PhD Student Grace Lamyman) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Grace has been appointed as one of our Schools Outreach officers, this facilitates multiple trips into schools to discuss STEM subjects, and specifically her research and the use of microfossils for evolutionary and palaeoclimate reconstructions.
Grace will be doing many events in many schools over the coming two year and will reach hundreds of school students in the North of Britain.
Year(s) Of Engagement Activity 2019,2020
 
Description Yorkshire Fossil Festival 2019 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact A three day event hosted in and around the Rotunda Museum of Geology and the town Scarborough, UK
Activities associated with this grant were highlighting the use of microfossil for investigating evolution.
Microfossils and microscopes were on display and members of the public could use them and ask questions of the researchers.
Multiple school groups attend throughout the event, with it also being open to the general public on the weekend.
The event typically 1000's of people attend the event over the three days.
Year(s) Of Engagement Activity 2018,2019