NSFGEO-NERC: Fungi in a Warmer World

Lead Research Organisation: Northumbria University
Department Name: Fac of Engineering and Environment

Abstract

Overview
Understanding how ecosystems will adapt due to climate change involves modelling future
scenarios and making inferences from long-term datasets. Paleoclimate research, specifically
from the Cenozoic provides an invaluable source of long-term data that can be used to
understand future climate change. A knowledge gap exists in that no long-term and large-scale
information on how fungi have responded to past climate change prevents understanding how
fungal ecosystems in different regions will change in the future.
The MMCO was the warmest interval of the Neogene and is potentially an analogue for future
warming. A base-line knowledge of global vegetation exists for this interval, but the lack of
fossil fungal data inhibits a full understanding of biodiversity and terrestrial carbon cycle
dynamics during this potential analogue. Modern ecological data suggests fungal diversity
should decrease with increasing temperatures, but fungal biodiversity is highest in warm biomes.
This conflicting information could be due to unforeseen long-term changes that are impossible to
investigate on human timescales. The presence of fossil fungi in sedimentary sequences provides
a reliable proxy for investigating how fungi respond to warmer global temperatures. No existing
works examine fungal ecosystem services or biodiversity in the Neogene. Without an in-depth
understanding of past fungal community structure, function, and interactions in warmer-thanpresent
conditions, it is impossible to predict future changes.
To fill the knowledge gap, we propose providing the first global view of fungal biodiversity and
ecosystem services during an interval of geologic time that is in line with future warming
scenarios. Specifically, we will generate and analyze a global-scale data set of fungal
biodiversity from MMCO sediments using fungal palynology. Existing palynological slides and
residues will be re-examined for fungal content (East Asia [China], Southeast Asia [Philippines,
Malaysia, Thailand], South Asia [Indus Fan], Europe, SE North America). Field work will
involve detailed sampling of exceptionally preserved leaf-, wood- or coal-bearing terrestrial sites
in Australia (year 1), South America (year 1), Africa (year 2), and North America (year 2).

Intellectual Merit
We will generate six gold open access presentation detailing 1) fungal occurrences and
ecological tolerances for each of the four study sites; 2) biogeography of fungal ecology during
the MMCO; and 3) new climate reconstructions for the MMCO taking fungi into account. We
will also generate a large database, entitled FUNgal Cenozoic Köppen Information (FUNCKI),
that will permit others to use fungal ecological tolerances in relation to Köppen bioclimate zones
to reconstruct past ecosystems using fungal palynomorphs. Additionally, we anticipate
presentations at multiple conferences a year over the three-year project.

Broader Impacts
We will strive to increase equable access to science through gold open access publication. We
will utilize gender neutral recruitment strategies and strive to recruit minorities for Postdoctoral,
doctoral, and undergraduate positions on the project where possible. We will build a ludic
pedagogical outreach and elementary-level STEM engagement package that will be disseminated
to teachers and primary students in the US, UK, South Africa, Argentina, and Peru. We will host
a special session on fungal palynology at the 2022 European Palaeobotany and Palynology
Conference in Stockholm, Sweden. We will provide a fungal palynology workshop with free-toparticipants
materials at the 2023 annual meeting of AASP-The Palynological Society in
Lexington, KY.

Publications

10 25 50

 
Description The grant set out to understand how fungi respond to warmer than modern climates by investigating the fossil fungi record. Our interim discoveries are:

A latitudinal biodiversity gradient (more taxa in the tropics than towards the poles) was present in fungi during the Middle Miocene (15.97 - 11.61 million years ago)
Statistical reconstructions of climate for the UK show a warmer and wetter world for the time interval 15 - 2.5 million years ago. Of particular note, mean annual precipitation, under atmospheric CO2 values comparable to mid-21st Century, were 161% present-day values.
Fossil fungi can be used as an additional source of palaeoclimate information

Other discoveries have not been peer-reviewed and it would be inappropriate to report them at this stage.
Exploitation Route The statistical climate reconstructions are already being taken forward by the international community following dissemination at conferences/workshops by members of this grant team.

Other outcomes have potential, but full results are necessary before committing to "how things might be taken forward".
Sectors Education,Environment,Culture, Heritage, Museums and Collections

 
Description Oligocene to Miocene terrestrial ecosystems and climate dynamics from the edge of northwest Europe
Amount £72,055 (GBP)
Funding ID ONEPlanet PhD Studentship 2021 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 10/2021 
End 04/2025
 
Title Terrestrial paleoclimate reconstruction of the UK Neogene (?Langhian to Piacenzian) comparing CREST, CRACLE and the Co-existence Approach 
Description Abstract The first detailed reconstruction of the terrestrial paleoclimate development of the UK Neogene (?Langhian to Piacenzian) is presented. The paleoclimate data are derived from the paleobotanical record using two probability-based reconstruction techniques CREST (Climate REconstruction SofTware) (Chevalier et al. 2014) and CRACLE (Climate Reconstruction Analysis using Coexistence Likelihood Estimation) (Harbert & Nixon 2015) that use Bayesian and likelihood estimation probability respectively. The results of these reconstructions are presented alongside reconstructions using the widely-applied Co-existence Approach (CA) (Utescher et al. 2014) for comparison. While all three techniques use the climate requirements of their Nearest Living Relatives as the basis of their reconstruction, they use different database observations. CREST and CRACLE use the GBIF (Global Biodiverstiy Information Facility) (GBIF, 2021) as well as WorldClim inputs for the 19 bioclimate variables used by BIOCLIM (http://www.worldclim.org/bioclim). Meanwhile, the CA uses the Palaeoflora database, meaning the input for the three models is different. The reconstructions for the UK Neogene palaeoclimate come from 4 localities (12 samples total) spanning the Middle Miocene (Langhian) to Pliocene (Piacenzian): Trwyn y Parc, Anglesey (Middle Miocene), Brassington Formation, Derbyshire (Serravallian-Tortonian), Coralline Crag Formation (latest Zanclean-earliest Piacenzian) and Red Crag Formation (Piacenzian-Gelasian) of southeast England. We present CREST and CRACLE reconstructions of Mean Annual Temperature (MAT), Mean Temperature of Warmest Quarter (MTWQ), Mean Temperature of Coldest Quarter (MTCQ), Mean Annual Precipitation (MAP) and precipitation seasonality (CoV ×100). The CA does not reconstruct MTWQ, MTCQ or precipitation seasonality. Instead, the CA reconstructs Warmest Month Mean Temperature (WMMT) and Coldest Month Mean Temperature (CMMT). The proportion of rainfall falling in the wettest months of the year (RMPwet(%)) was used as a proxy for precipitation seasonality following the methodology of Jacques et al. (2011) and Utescher et al. (2015). The CREST R-code output provides 0.5 and 0.95 (2-s) uncertainties as well as an optimum and mean for each variable. The CRACLE R-code output provides both parametric and non-parametric joint likelihoods (P-CRACLE and N-CRACLE) with 0.95 (2-s) uncertainties and a mean that is based on P-CRACLE. The CA generates a minimum and maximum likelihood which together comprise the coexistence interval. The Neogene climate reconstruction of the UK shows a cooling trend from the Langhian to the Pliocene-Pleistocene boundary. CREST and CRACLE produce trends and values consistent with Co-existence Approach data with 0.95 uncertainties overlapping with the CA coexistence interval. File Descriptions Table S1 displays the complete reconstruction for the UK Neogene using CREST, CRACLE and the Co-existence Approach. Table S2 displays detailed site information including: modern and paleo latitude and longitude, dating technique, modern climatology and fossil assemblage diversity (number of fossil taxa versus number of NLRs used for climate reconstruction). Modern climatology has been included to serve as a comparison to the reconstructed Neogene climate. This data has been extracted from WorldClim 2.1 (Fick & Hijmans, 2017). Data Set S1 contains the list of fossil spore and pollen taxa per site and associated Nearest Living Relatives (NLRs), where identifiable, used as the input for CREST, CRACLE and the Co-existence Approach. Relic taxa are included and highlighted in red. Data Set S2 is included to show the effect relic taxa have on paleoclimate reconstructions. The relic taxa are removed following the protocol of Utescher et al. (2014) whereby known relic taxa are removed from analyses to avoid biased reconstructions. Relic taxa removed from analyses include Cathaya, Cryptomeria, Pinus sylvestris and Sciadopitys when present. Data Set S3 is included to show the effects of removing family-level identifications in CRACLE reconstructions. Removing families is shown to generate a less informative reconstruction. Including both genera- and family-level classifications of NLR (Nearest Living Relative) is recommended, however we suggest identifying NLRs (Nearest Living Relatives) to genera-level wherever possible. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact To early to see 
URL https://zenodo.org/record/5813639
 
Description Brassington Press Release 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Joint press release with the Peak District National Park on the Pound et al. (2022) and McCoy et al. (2022) publications. Work was republished by:

https://www.sciencedaily.com/releases/2022/10/221021132743.htm
https://www.derbyshiretimes.co.uk/news/environment/derbyshire-fossil-study-reveals-insights-into-peak-districts-12-million-year-old-climatic-past-3901281
https://farmtable.com.au/derbyshire-fossil-study-reveals-insights-into-peak-districts-12-million-year-old-climatic-past/
https://www.churnetsound.co.uk/post/derbyshire-fossil-study-reveals-insights-into-peak-district-s-12-million-year-old-climatic-past
https://theprint.in/science/fossil-study-gives-insights-into-12-million-year-old-climatic-past-of-uks-peak-district/1179314/
https://www.latestly.com/agency-news/science-news-fossil-study-gives-insights-into-12-million-year-old-climatic-past-of-uks-peak-district-4366538.html
https://www.geologypage.com/2022/10/derbyshire-fossil-study-reveals-insights-into-peak-districts-12-million-year-old-climatic-past.html
https://www.devdiscourse.com/article/science-environment/2223831-fossil-study-gives-insights-into-12-million-year-old-climatic-past-of-uks-peak-district
https://m.dailyhunt.in/news/india/english/ani67917250816496966-epaper-dh448c3797a13d4f32b1d2367d0d72a726/fossil+study+gives+insights+into+12+millionyearold+climatic+past+of+uks+peak+district-newsid-n434721964
Year(s) Of Engagement Activity 2022
URL https://www.peakdistrict.gov.uk/learning-about/news/current-news/derbyshire-fossil-study-reveals-ins...
 
Description Conversation piece on Gibson et al. 2022 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Public engagement piece on the Gibson et al. 2022 publication.
Year(s) Of Engagement Activity 2022
URL https://theconversation.com/we-reconstructed-britain-of-millions-of-years-ago-to-see-what-climate-br...