Increasing lifespan in carrots: determining the molecular and metabolic mechanisms that underpin the blackening phenomenon in cut carrots

Lead Research Organisation: University of Leeds
Department Name: Inst of Integrative & Comparative Biolog

Abstract

The project is focussed on carrots, which are the major UK root vegetable crop, with over 700,000 tons produced every year. Twenty two billion carrot seeds are planted every year, producing around 100 carrots per year per person in the UK. The crop covers about 9,000 hectares of farmland, having a sales value of over £290 million. Freshly harvested carrots are distributed to shops throughout Britain on almost every day of the year. Hence, carrots are harvested in the UK over almost 12 months of the year using a range of different techniques. However, serious problems arise with cut products from carrots harvested in later months of the year. In particular, the shelf life of carrot strips is very short because they have a tenancy to turn black.

This project seeks to find a solution to this financially serious problem to the industry by determining the molecular and metabolic mechanisms that underpin the blackening phenomenon in cut carrots. We will achieve this goal by firstly by characterizing the profiles of metabolites, pigments and antioxidants in carrots harvested from the field over the 12 month period and link this to susceptibility to blackening after cutting.

Secondly, we will also characterize the metabolite and transcript profiles that accompany the blackening process in cut carrots, determining in particular if this is linked to the production of reactive oxygen species, secondary metabolites and programmed cell death. Thirdly, we will determine whether these processes also occur or can be induced in carrot cells growing in culture. If this is the case, the cell culture system will be used to analyse compounds that have the potential to delay blackening.

Fourthly, we will develop molecular and protein markers for carrot senescence and a pre-disposition to blackening. We will determine whether these markers can be used to predict susceptibility to blackening. Finally, we will determine the role of phytohormones and environmental effectors that influence the senescence of harvested carrots and identify factors/processes by which the susceptibility to blackening can be decreased.

Publications

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Studentship Projects

Project Reference Relationship Related To Start End Student Name
BB/R505535/1 01/10/2017 30/09/2021
1947433 Studentship BB/R505535/1 01/10/2017 30/09/2021
 
Description James Hutton Institute, Dundee Scotland 
Organisation James Hutton Institute
Department Cell and Molecular Sciences
Country United Kingdom 
Sector Public 
PI Contribution I collaborated with the James Hutton Institute by discussing my project in detail and analysed my samples using their equipment and expertise.
Collaborator Contribution Members of the James Hutton Institute gave me guidance and access to their facilities and equipment in order to carry out a metabolomics analysis of my samples using both HPLC-MS and GCMS. I also was shown how to use software called Excalibur to analyse my data and was given guidance on how to correctly statistically assess my results.
Impact Metabolite profiling analysis was performed on blackened and control carrot samples, using a combination of Gas Chromatography and Mass Spectrometry. Significantly decreased levels of amino acids and primary sugars and carbohydrates were found in blackened samples compared to control samples. Significantly increased levels of fatty acids and non-primary sugars/carbohydrates compounds were found in blackened samples compared to control samples. Significantly increased levels of several phenolic compounds were found in blackened samples compared to control samples, however most were not significantly different. This collaboration is within one discipline.
Start Year 2018
 
Description Luke Institute, Finland 
Organisation Natural Resources Institute Finland
Country Finland 
Sector Public 
PI Contribution I discussed my project in detail and there have been talks of further experiments concerning my samples. I was able to use the institutes facilities and expertise's to analyse the lignin content of my samples. Further experiments have since been carried out on my remaining samples after I left and I may be visiting again to carry out more myself.
Collaborator Contribution Members of the Luke Institute gave me guidance and access to their facilities and equipment in order to compare the lignin content of my samples, as well as analyse the subunit portions of the lignin using pyrolysis-GC. After I left, this lab also carried out a carbohydrate comparison using methanolysis-GC-FID.
Impact A significant increase in lignin content was seen in blackened carrot tissue compared to that of orange carrot tissue. An analysis of the subunit portions of the lignin showed no significant differences. Whereas the preliminary results from the carbohydrate comparison show several differences, though more replicates are required for a statistical analysis. This collaboration is within one discipline.
Start Year 2019