Unravelling the Working Mechanisms of Fluorescent Molecular Rotors for Bioimaging
Lead Research Organisation:
King's College London
Department Name: Physics
Abstract
The overall aim of the thesis will be to gain a detailed understanding of the working mechanism of fluorescent molecular rotors, in particular those based on BODIPY. These rotors can be used as probes to evaluate the local viscosity in cell membranes and lipid bilayers. Our goal will be achieved by a combination of multiscale atomistic simulations in combination with advanced fluorescence imaging. The insight gained will allow to optimise the use of fluorescent molecular rotors as rapid and reliable viscosity sensors in fluorescence microscopy, and other biotechnologically relevant viscosity-sensing and imaging assays.
The first stage of my project can be summarised by three questions: Is it possible to accurately characterise the potential energy surface of a prototypical BODIPY-based rotor (BODIPY-Phe)? What can we learn about its excited state characteristics? Which simulation methods are the most efficient and effective tools for studying BODIPY-Phe? The aim of this stage of work is, therefore, to refine and compare the simulation techniques which will likely be needed for detailed future studies of the rotor, whilst gaining a qualitative insight into the radiative decay mechanisms that control its photophysical properties.
The second stage of the project will build on the first by performing more complex molecular dynamics simulations, both in vacuo and in solvents. These will be done in conjunction with experimental absorption, emission and anisotropy measurements of the BODIPY rotor in solvents of varying viscosities. The aim of these tasks is to gain a more validated understanding of the behaviour of the molecule in real environments. This will all be complemented by computational characterisation of the ground and excited state of two other molecular rotors: DCVJ and ThT. These rotors are thought to have different working mechanisms to BODIPY, so should be good comparative tools.
The first stage of my project can be summarised by three questions: Is it possible to accurately characterise the potential energy surface of a prototypical BODIPY-based rotor (BODIPY-Phe)? What can we learn about its excited state characteristics? Which simulation methods are the most efficient and effective tools for studying BODIPY-Phe? The aim of this stage of work is, therefore, to refine and compare the simulation techniques which will likely be needed for detailed future studies of the rotor, whilst gaining a qualitative insight into the radiative decay mechanisms that control its photophysical properties.
The second stage of the project will build on the first by performing more complex molecular dynamics simulations, both in vacuo and in solvents. These will be done in conjunction with experimental absorption, emission and anisotropy measurements of the BODIPY rotor in solvents of varying viscosities. The aim of these tasks is to gain a more validated understanding of the behaviour of the molecule in real environments. This will all be complemented by computational characterisation of the ground and excited state of two other molecular rotors: DCVJ and ThT. These rotors are thought to have different working mechanisms to BODIPY, so should be good comparative tools.
Organisations
People |
ORCID iD |
Carla Molteni (Primary Supervisor) | |
Bethan Cornell (Student) |
Studentship Projects
Project Reference | Relationship | Related To | Start | End | Student Name |
---|---|---|---|---|---|
EP/N509498/1 | 01/10/2016 | 30/09/2021 | |||
1948409 | Studentship | EP/N509498/1 | 01/10/2017 | 30/04/2022 | Bethan Cornell |
EP/R513064/1 | 01/10/2018 | 30/09/2023 | |||
1948409 | Studentship | EP/R513064/1 | 01/10/2017 | 30/04/2022 | Bethan Cornell |
Description | Hosting Work Experience Students |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | As part of my role as a mentor for the social mobility foundation, I've hosted 2 work experience students. This has involved teaching them about my work and this project and helping them to develop new skills and a deeper interest in science. |
Year(s) Of Engagement Activity | 2019 |
Description | STEM Ambassador work comprising many school visits across London |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | As a STEM Ambassador, I regularly go into school and talk to them about what life is like as a scientist. Alongside explaining my project, its impact and the skills I'm using, I also run an activity called 'be a scientist for the day', which aims to teach children about a career in research and the skill required to be an independent researcher. |
Year(s) Of Engagement Activity | 2018,2019 |