Developmental genes in the life cycle of a parasitic flatworm
Lead Research Organisation:
Natural History Museum
Department Name: Life Sciences
Abstract
Tapeworms are a group of more than 10,000 known species adversely affecting the health of both ourselves and our domesticated animals. Their complex life histories centre on the maintenance of a germinative 'neck' region that produces a continuous chain of segments throughout their lives, each replete with male and female reproductive organs capable of producing an enormous number of new infections. Genetic mechanisms underpinning their development are unknown, but have implications for both understanding novel means of therapeutic intervention as well as understanding basic developmental processes in the animal kingdom. This research will examine the roles of Hox and other developmental genes that act to coordinate embryonic axial patterning and other aspects of development throughout the animal kingdom (e.g. establishing which end will develop into the 'head' and which into the 'tail'). By understanding the actions of these genes, this research will resolve fundamental questions regarding how tapeworms became segmented to enable their parasitic lifestyle and how Hox genes are used in the complex development of a parasitic animal. In turn, this will provide a platform for future research on development in other parasitic flatworm groups.
Technical Summary
Hox and other homeobox genes will be used to investigate segmentation and other aspects of tapeworm development as well as the evolution of the Hox cluster in a medically and economically important group of metazoan parasites that have been effectively absent from the field of evo devo. A preliminary, degenerate primer-based study of homoebox genes in the model cestode Hymenolepis has recovered anterior, central and posterior-class Hox genes and an initial examination of their expression patterns in adult worms by whole mount in situ hybridization (WMISH) has produced promising results implicating their involvement in basic developmental processes including segmentation and growth of the reproductive organs. A genomic library will be used to screen for additional members of the Hox family and other specific homeoboxes (Cdx, Otx) to be used as regional markers in resolving fundamental questions such as the correct orientation of their anteroposterior axis. Gene expression studies employing WMISH will be extended to understand the role of the Hox family of transcription factors throughout tapeworm ontogeny and their functions will be explored using gene suppression techniques. These data will elucidate developmental mechanisms in tapeworms and allow us to determine the extent to which spatial and temporal collinear expression of Hox genes has been preserved in parasitic groups with complex life cycles. The work will provide the first detailed study of Hox evolution and function in a metazoan parasite and will provide the data by which development in tapeworms can be understood in the wider context of animal evolution.
People |
ORCID iD |
Peter Olson (Principal Investigator) |
Publications
Cunningham LJ
(2010)
Description of Hymenolepis microstoma (Nottingham strain): a classical tapeworm model for research in the genomic era.
in Parasites & vectors
Olson PD
(2012)
Cestode genomics - progress and prospects for advancing basic and applied aspects of flatworm biology.
in Parasite immunology
Pouchkina-Stantcheva NN
(2011)
Spatial and temporal consistency of putative reference genes for real-time PCR in a model tapeworm.
in Molecular and biochemical parasitology
Pouchkina-Stantcheva NN
(2013)
RNA-mediated gene suppression and in vitro culture in Hymenolepis microstoma.
in International journal for parasitology
Riddiford N
(2011)
Wnt gene loss in flatworms.
in Development genes and evolution
Tsai IJ
(2013)
The genomes of four tapeworm species reveal adaptations to parasitism.
in Nature
Description | We have identified key genes responsible for controlling development in the complex life cycles of parasitic tapeworms for the first time. This provides insight into potential targets for chemotherapy and a context with which to understand how their development relates to free-living animals. We have developed tools for culturing and assaying gene function in the model system. Through collaboration we have made the complete genome and multiple transcriptome (expressed gene) profiles of the model parasite available to the public. |
Exploitation Route | Our empirical work provides both tools for others to adopt as well as hypotheses about gene function that can be tested or related to other systems. Complete genome and transcriptome data are available for download (including models of over 10.5K tapeworm genes) to the public and these data have already been used in published research articles by international research labs. More information can be found on www.olsonlab.com |
Sectors | Agriculture, Food and Drink,Education,Pharmaceuticals and Medical Biotechnology |
URL | http://www.sanger.ac.uk/resources/downloads/helminths/hymenolepis-microstoma.html |
Description | Our research has provided the first comprehensive, fully annotated suite of genomic data of a tapeworm: a cosmopolitan and ubiquitous group of helminth parasites that include 2 of the world's neglected tropical diseases. These data greatly accelerate the pace of research in both basic and applied fields of bioscience and have direct impact on anti-helminthic drug development for species infecting ourselves and our domesticated farm and pet animals. Our research has already resulted in high impact publications and data produced as a direct or indirect result of the grant are already being seen in recent publications by the laboratories around the world. |
Sector | Agriculture, Food and Drink,Education,Pharmaceuticals and Medical Biotechnology,Other |
Impact Types | Economic |
Description | SynTax |
Amount | £26,849 (GBP) |
Organisation | Research Councils UK (RCUK) |
Sector | Public |
Country | United Kingdom |
Start | 06/2010 |
End | 12/2010 |
Title | Hymenolepis model |
Description | We have developed a classical mouse/beetle-hosted tapeworm model for contemporary research, providing full genome and transcriptome data and ongoing development of functional tools for assaying gene expression. Seed cultures of this model organism are made available free of charge to interested researchers. |
Type Of Material | Model of mechanisms or symptoms - non-mammalian in vivo |
Year Produced | 2012 |
Provided To Others? | Yes |
Impact | Underpinned the first exploration of the tapeworm genome. |
URL | http://www.sanger.ac.uk/resources/downloads/helminths/hymenolepis-microstoma.html |
Title | Hymenolepis genomic data DB |
Description | Full genome and transcritomic data for the tapeworm model Hymenolepis microstoma |
Type Of Material | Database/Collection of data |
Year Produced | 2011 |
Provided To Others? | Yes |
Impact | The data underpinned the first full exploration of the tapeworm genome and is being increasingly used by others for various bioinformatic analyses and other studies. |
URL | http://www.sanger.ac.uk/resources/downloads/helminths/hymenolepis-microstoma.html |
Description | Wellcome Trust Sanger Institute |
Organisation | The Wellcome Trust Sanger Institute |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | We have provided samples of cestodes and other flatworm parasites for genome and transcriptome sampling. We have provided intellectual input in the form of project development and guidance, bioinformatic exploration and interpretation of results, and the preparation of manuscripts. We have also collaborated on a successful external RCUK application to provide support for a PDRA to lead the genome assembly at the Sanger Institute. |
Collaborator Contribution | Colleagues at the Wellcome Trust Sanger Institute have performed and underwritten all genome and transcriptome sequencing and have led in all bioinformatic analyses, as well as provided intellectual input in the form of project development and guidance, exploration and interpretation of results, and the preparation of manuscripts. |
Impact | Collaboration with the WTSI led to the full characterisation of the genome and multiple transcription profiles of our model tapeworm, and thereby allowed us to greatly expand the scope of our original project, from consideration of a small number of key developmental genes to comprehensive analysis of all signalling and transcription factors. The collaboration has resulted so far in two major publications, an invited review in Parasite Immunology [80054715434] and an article in Nature [84875909456], and a 3rd publication on tapeworm gene expression is nearing submission. The collaboration also led to development of a successful joint RCUK SynTax grant providing 9 months of salary for a PDRA to work at the WTSI. The collaboration continues today and has been expanded to encompass a large number of additional parasitic flatworms. |
Start Year | 2010 |
Description | Evolve magazine |
Form Of Engagement Activity | A magazine, newsletter or online publication |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Magazine went out to all members of the the Natural History Museum in London and was on sale in the Museum. The article was a direct popularisation of our research funded by BBSRC, hopefully giving the public an understanding of why studying the genomes and developmental genetics of tapeworms is important to advancing both medical and evolutionary research. The activity did not involve direct engagement with the reading audience. |
Year(s) Of Engagement Activity | 2014 |
URL | http://www.olsonlab.com/resources/Publications/Olson.EvolveMagazine.2014.pdf |
Description | Press release |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | NHM and WTSI press releases including interviews help to promote interest in the publication of tapeworm genomes. Press interest increased resulting in print and online coverage of the genome publication. |
Year(s) Of Engagement Activity | 2013 |
URL | http://www.olsonlab.com/page41/index.html |
Description | Science Uncovered - NHM |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Educated the public about tapeworm biology, including their importance and impact on society. As a result of an introduction at the event, our lab is currently hosting an art university student who is doing her final year project in our lab. |
Year(s) Of Engagement Activity | 2011,2012,2013,2014 |