The mechanistic basis and potential disease relevance of microtubule disorganisation in axons
Lead Research Organisation:
University of Manchester
Department Name: School of Biological Sciences
Abstract
Here we will study the properties of the microtubule (MT) cytoskeleton of neuronal axons to gain a better understanding of the important roles that MTs play during the formation, maintenance and degeneration of neurons.
Axons are the slender, cable-like, up to several meter long protrusions of neurons which form the nerves that electrically wire our bodies. They can usually not be replaced, hence need to be maintained for up to a century in humans. Unsurprisingly, we gradually lose ~50% of our axons towards old age - and far more in neurodegenerative diseases (ND). In spite of their enormous importance, we know far too little about the mechanisms that maintain these delicate structures long-term or lead to their premature decay in neurodegeneration.
Axon formation and maintenance essentially depends on the microtubule (MT) cytoskeleton. MTs consist of filamentous protein polymers arranged into 25nm thick tubules. In axons, MTs form continuous parallel bundles, serving as structural backbones and highways for life sustaining cargo/organelle transport. In ageing and ND, axons often form swellings where MT bundles become disorganised into criss-crossing curls, which trap organelles and are believed to trigger axonal loss.
For the study of MT disorganisation, we developed the working model of axonal homeostasis based on our experimental data obtained in Drosophila neurons; this model involves three steps (details in CfS pt. 1): (1) MTs have to undergo constant polymerisation/depolymerisation to self-renew. (2) Each MT polymerisation event poses a risk of MT disorganisation, particularly in axons where high densities of MTs and molecular motors generate shear forces which can induce MT curling. (3) Order is imposed by a range of different mechanisms mediated by MT-binding proteins (e.g. by guiding MTs into parallel bundles, or eliminating MTs that have gone off-track). We propose that loss of single (or multiple) of these order-imposing mechanisms increases the risk of MT disorganisation leading to axon swellings - thereby providing potential explanations for late-onset axon degeneration linked genetically to various MT regulators.
So far we have tested and refined this model primarily through experimental work in cultured fly and mouse neurons, by focusing on mechanisms regarding step 3 of our model (i.e. order-imposing MT regulators). Here we will focus on the mechanisms involved in step 2 (i.e. causing the curling of MTs), and compare our knowledge in cultured neurons to the situation in the nervous system in vivo. This work is important for several reasons:
First, data obtained here will reveal the degree to which observations made in the highly efficient model of cultured neurons, reflect mechanisms underlying axon swellings in vivo. This will give important direction for experimental work aiming to unravel how axon swellings form and can be prevented.
Second, we will generate important data concerning MT dynamics and their spatial arrangements in axons. These data will provide important information for the mathematical models of MT behaviours (see support letters) which we are developing in parallel projects - aiming to eventually perform long-term in silico experiments that can test pathological roles of MTs in late-onset neurodegeneration.
Third, our data will provide important understanding, descriptions and concepts of axonal MTs that will aid worldwide research into axonal transport, organelle dynamics and MT regulation, thus promoting general advances in our understanding of axon biology during development, ageing, regeneration and degeneration.
Axons are the slender, cable-like, up to several meter long protrusions of neurons which form the nerves that electrically wire our bodies. They can usually not be replaced, hence need to be maintained for up to a century in humans. Unsurprisingly, we gradually lose ~50% of our axons towards old age - and far more in neurodegenerative diseases (ND). In spite of their enormous importance, we know far too little about the mechanisms that maintain these delicate structures long-term or lead to their premature decay in neurodegeneration.
Axon formation and maintenance essentially depends on the microtubule (MT) cytoskeleton. MTs consist of filamentous protein polymers arranged into 25nm thick tubules. In axons, MTs form continuous parallel bundles, serving as structural backbones and highways for life sustaining cargo/organelle transport. In ageing and ND, axons often form swellings where MT bundles become disorganised into criss-crossing curls, which trap organelles and are believed to trigger axonal loss.
For the study of MT disorganisation, we developed the working model of axonal homeostasis based on our experimental data obtained in Drosophila neurons; this model involves three steps (details in CfS pt. 1): (1) MTs have to undergo constant polymerisation/depolymerisation to self-renew. (2) Each MT polymerisation event poses a risk of MT disorganisation, particularly in axons where high densities of MTs and molecular motors generate shear forces which can induce MT curling. (3) Order is imposed by a range of different mechanisms mediated by MT-binding proteins (e.g. by guiding MTs into parallel bundles, or eliminating MTs that have gone off-track). We propose that loss of single (or multiple) of these order-imposing mechanisms increases the risk of MT disorganisation leading to axon swellings - thereby providing potential explanations for late-onset axon degeneration linked genetically to various MT regulators.
So far we have tested and refined this model primarily through experimental work in cultured fly and mouse neurons, by focusing on mechanisms regarding step 3 of our model (i.e. order-imposing MT regulators). Here we will focus on the mechanisms involved in step 2 (i.e. causing the curling of MTs), and compare our knowledge in cultured neurons to the situation in the nervous system in vivo. This work is important for several reasons:
First, data obtained here will reveal the degree to which observations made in the highly efficient model of cultured neurons, reflect mechanisms underlying axon swellings in vivo. This will give important direction for experimental work aiming to unravel how axon swellings form and can be prevented.
Second, we will generate important data concerning MT dynamics and their spatial arrangements in axons. These data will provide important information for the mathematical models of MT behaviours (see support letters) which we are developing in parallel projects - aiming to eventually perform long-term in silico experiments that can test pathological roles of MTs in late-onset neurodegeneration.
Third, our data will provide important understanding, descriptions and concepts of axonal MTs that will aid worldwide research into axonal transport, organelle dynamics and MT regulation, thus promoting general advances in our understanding of axon biology during development, ageing, regeneration and degeneration.
Technical Summary
Axons are extremely long, cable-like protrusions of neurons wiring the nervous system. The structural backbones and highways for life sustaining transport in axons are formed by continuous bundles of the microtubule (MT) cytoskeleton. Accordingly, defects in MT regulation can dramatically impact on neuronal development, maintenance, and regeneration, thus causing neuro-developmental or -degenerative disorders. For example, areas of MT disorganisation in pathological swellings of axons, observed during ageing and in neurodegenerative diseases, are associated with axon decay. From work in cultured neurons of fruit flies, we developed a working model explaining the formation of axonal MT disorganisation: polymerising MTs in axons do not automatically arrange into straight bundles but are predisposed to curl up into disorganised arrays. However, a variety of mechanisms mediated by MT-binding proteins are in place to prevent MT disorganisation. We propose that (genetic) defects of these order-imposing proteins render axons more vulnerable to the formation of MT disorganisation/axon swellings, potentially explaining late-onset axon loss, such as in motorneuron disease or spastic paraplegias.
Here we will test the role of MTs in this model. We will use advanced electron microscopy techniques to gain reliable data about MT numbers and spatial arrangements in axons (Obj. 1). We will apply live imaging of cultured neurons to study the processes leading to MT disorganisation in axons (Obj. 2). We will use MT bending assays in vitro, to address how curled MT confirmations are maintained and whether this requires stabilisation through axonal proteins (Obj. 3). We will use three different techniques to study MT disorganisation in axon swellings in vivo and compare it to our observations in cultured neurons (Obj. 4). Data obtained will also be used for our parallel projects developing mathematical models of axonal MT dynamics to test long-term roles of MTs in axon maintenance.
Here we will test the role of MTs in this model. We will use advanced electron microscopy techniques to gain reliable data about MT numbers and spatial arrangements in axons (Obj. 1). We will apply live imaging of cultured neurons to study the processes leading to MT disorganisation in axons (Obj. 2). We will use MT bending assays in vitro, to address how curled MT confirmations are maintained and whether this requires stabilisation through axonal proteins (Obj. 3). We will use three different techniques to study MT disorganisation in axon swellings in vivo and compare it to our observations in cultured neurons (Obj. 4). Data obtained will also be used for our parallel projects developing mathematical models of axonal MT dynamics to test long-term roles of MTs in axon maintenance.
Planned Impact
Our project uses the fruitfly Drosophila to unravel fundamental regulatory mechanisms of the microtubule cytoskeleton in axons, during nervous system development and maintenance. The key pathway for achieving impact on this project is to improve the wider appreciation and understanding of our research, and this will primarily be achieved through communication with various target audiences including other researchers (cell, developmental and neurobiologists), students, representatives from industry, and members of the general public. This task is challenging, because full appreciation of our research and its enormous potentials requires the integrated understanding of three very different topics, each loaded with specific ideas and concepts:
A) axons: requiring an understanding of their anatomy, their physiology, their delicate structure, their enormous longevity, and their vulnerability during injury, ageing, developmental and neurodegenerative disease.
B) cytoskeleton: appreciating the existence of different cytoskeletal networks, the requirement of cytoskeleton for virtually all cell functions, the different classes of proteins which associate with and regulate cytoskeleton, the disease relevance of these regulators, the cytoskeleton as a promising drug target.
C) the invertebrate model organism Drosophila: the fundamental concept of using model organisms, understanding why flies came into research, the many experimental advantages of the fly, the translational value rooted in evolutionary conservation, the enormous breadth of topics researched in flies
For several years, I have been proactive in communicating our research at all levels, including fellow scientists, industry, schools and other lay audiences, and our essential strategies and key resources have been successfully implemented. The key task now is to drive these approaches to higher momentum. During this project, we will therefore carry on with our activities, constantly improving their quality and breadth, with the essential goal of driving our engagement to true impact.
The concrete action points/deliverables for this grant period are:
1. Scientific publications (Y2 and Y3; PI, PDRA, RA, SP)
2. Presentation at conferences (~ month 3, 4, 11, 15, 17, 21, 23, 27, 30, 35; PI, PDRA, SP)
3. Conceptual and comprehensive review about axon growth (month 9; PI)
4. Press releases (Y2 and Y3; PI)
5. Further improve web resource on axons and the cytoskeleton (month 18, PI, PDRA, SP)
6. Science fairs and school visits (ca. 4 p.a. , PI, RA, PDRA, SP)
7. Publish an article in a science journal about droso4schools (Y1, PI, SP)
8. Present at a national teacher conference (Y2, PI, SP)
9. Placing candidates at schools and refine/develop teaching resources (Y1-3, PI, SP)
A) axons: requiring an understanding of their anatomy, their physiology, their delicate structure, their enormous longevity, and their vulnerability during injury, ageing, developmental and neurodegenerative disease.
B) cytoskeleton: appreciating the existence of different cytoskeletal networks, the requirement of cytoskeleton for virtually all cell functions, the different classes of proteins which associate with and regulate cytoskeleton, the disease relevance of these regulators, the cytoskeleton as a promising drug target.
C) the invertebrate model organism Drosophila: the fundamental concept of using model organisms, understanding why flies came into research, the many experimental advantages of the fly, the translational value rooted in evolutionary conservation, the enormous breadth of topics researched in flies
For several years, I have been proactive in communicating our research at all levels, including fellow scientists, industry, schools and other lay audiences, and our essential strategies and key resources have been successfully implemented. The key task now is to drive these approaches to higher momentum. During this project, we will therefore carry on with our activities, constantly improving their quality and breadth, with the essential goal of driving our engagement to true impact.
The concrete action points/deliverables for this grant period are:
1. Scientific publications (Y2 and Y3; PI, PDRA, RA, SP)
2. Presentation at conferences (~ month 3, 4, 11, 15, 17, 21, 23, 27, 30, 35; PI, PDRA, SP)
3. Conceptual and comprehensive review about axon growth (month 9; PI)
4. Press releases (Y2 and Y3; PI)
5. Further improve web resource on axons and the cytoskeleton (month 18, PI, PDRA, SP)
6. Science fairs and school visits (ca. 4 p.a. , PI, RA, PDRA, SP)
7. Publish an article in a science journal about droso4schools (Y1, PI, SP)
8. Present at a national teacher conference (Y2, PI, SP)
9. Placing candidates at schools and refine/develop teaching resources (Y1-3, PI, SP)
Organisations
Publications
Costa-Gomes, B
(2018)
ALFRED: Automated image analysis of microtubule networks in nerve cells
Hahn I
(2021)
Tau, XMAP215/Msps and Eb1 co-operate interdependently to regulate microtubule polymerisation and bundle formation in axons.
in PLoS genetics
Hahn I
(2019)
The model of local axon homeostasis - explaining the role and regulation of microtubule bundles in axon maintenance and pathology.
in Neural development
Description | We have already generated first proof that MT disorganisation occurs in vivo. We have improved imaging approaches for live and high resolution imaging as a prerequisite to studying the mechanisms underlying MT disorganisation and performed extended live imaging (24hr sessions) on 4 different mutant conditions revealing that MT disorganisation is predominantly generated in growth cones and left as a footpring in axons, or at axon branch points. The key difference between mutant and wild-type neurons is the fact that wild-type can reduce areas of disorganisation whereas all mutants are unable to do so an show them enlarge. We have had first successes with the high pressure freezing / freeze substitution EM, but work on further improving the methodology. This aspect had to be abondoned to free resources for cost-neutral extension. We have established a disease pathway for specific tubulin mutations involved in lissencephaly which is now close to publication. |
Exploitation Route | Four outcome URLs, please see outreach and publication section. They will provide new concepts to think about axon degeneration, as described in a review coming out soon. |
Sectors | Education,Healthcare |
Description | The Pathway to Impact funding on this grant has been used to drive our outreach program within the context of the Manchester fly facility including the droso4schools initiative (see outreach outputs for this grant). It has impact across the globe, as illustrated by droso4Nigeria and droso4LatAm cloning our strategies in Africa and Latin America. I was invited to teach Drosophila genetics in Nigeria, and our activities were submitted as a REF2021 impact case. Presentation about our outreach work at a European conference: Patel, S., Prokop, A. (2021b) Making the impossible possible through objective-driven, long-term initiatives. 18th European Drosophila Neurobiology Conference (Org.: S. Casas Tintó, F. A. Martin), online from Madrid (04-06 May) -- www.neurofly2020.com |
First Year Of Impact | 2021 |
Sector | Education |
Impact Types | Societal |
Description | 11 school outreach events |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | Within the droso4schools initiative we undertook 11 school outreach events teaching curriculum-relevant topics using Drosophila as a teaching tool: Faith Academy, secondary Living Faith Church school, Goshen City, Nasarawa State, Nigeria Kingdom Heritage Model Primary School, primary Living Faith Church school, Goshen City, Nasarawa State, Nigeria British Science Week, University of Manchester -12 & 13 March 2020 Animal Research Day, FBMH, University of Manchester - 11 Dec 2019 Altrincham Grammar School - 8 Oct 2019 Scarisbrick Hall School - 4 July 2019 GorseHill Primary School - 21 June 2019 Animal Research Day, FBMH, University of Manchester - 17 July 2019 St Johns Spanish Exchange, University of Manchester - 17 June 2019 Scarisbrick Hall School, 24 April 2019 British Science Week, University of Manchester -11 to 15 March 2019 |
Year(s) Of Engagement Activity | 2019 |
URL | https://droso4schools.wordpress.com/teacher-info/#Events |
Description | Abdulazeez, R, Prokop, A. (2020). How fruit flies can boost life and biomedical sciences in Nigeria. In "Yerwa Express News", 19 July |
Form Of Engagement Activity | A magazine, newsletter or online publication |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | An article in a national newspaper explains the advantages of using Drosophila in research to drive cutting-edge research whilst saving resources. Available information and resources were disseminated |
Year(s) Of Engagement Activity | 2020 |
URL | https://www.yenlive.com/news/index.php/opinions/3158-video-how-fruit-flies-can-boost-life-and-biomed... |
Description | Blog post describing new school resource |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | Prokop, A. (2018h). A novel engaging approach to teaching life cycle and evolution in KS2 classrooms (primary schools). Blog post in "Gedankenexperimente" |
Year(s) Of Engagement Activity | 2018 |
URL | https://poppi62.wordpress.com/2018/12/01/primary-school |
Description | Bollington Scibar, Bollington, 14 Oct 2019 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | Discussing the importance of Drosophila research for the biomedical sciences at a local bar outreach event |
Year(s) Of Engagement Activity | 2019 |
URL | https://bollingtonscibar.wordpress.com/speakers/ |
Description | Calderón Segura, M. E, González Marín, B, Muraro, N, Galagovsky, D, Olguin, P, Prokop, A, Patel, S. (2020). droso4LatAm - Constuyendo una comunidad para la divulgación de Drosophila melanogaster |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | A webpage was designed to reach Spanish speaking audiences to raise awareness and disseminate resources to teach biology in schools based on Drosophila experiments |
Year(s) Of Engagement Activity | 2020 |
URL | https://droso4latam.wordpress.com |
Description | Contribution on BBC Worldservice program |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | 10 minute interview on: Luck-Baker, A. (2018). Do Insects Feel Pain? Discovery, Killing Insects: The Rights and Wrongs (episode 2 of 2). In "BBC World Service Discovery", pp. 27 min. BBC, UK. |
Year(s) Of Engagement Activity | 2018 |
URL | https://www.bbc.co.uk/programmes/w3csxgp4 |
Description | Genetics Soc. of America blog |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | Patel, S., Prokop, A. (2019). Why fruit flies belong in primary and secondary schools. Blog post in "Genes to Genomes" |
Year(s) Of Engagement Activity | 2018 |
URL | http://genestogenomes.org/flies-in-schools |
Description | Hands-on workshop on Drosophila melanogaster in bioscience research (Bingham Univ., Nigeria) |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | The workshop was introducing Nigerian researchers to the use of Drosophila melanogaster for biomedical research |
Year(s) Of Engagement Activity | 2019 |
URL | https://droso4nigeria.wordpress.com/2019/11/27/workshop/ |
Description | Invited to teach at the EMBO Practical Course "Drosophila Genetics and Genomics; virtual, 11-15 Jan 2021 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | I taught about Drosophila genetics to researchers who want to make use of fruit flies as a model organisms |
Year(s) Of Engagement Activity | 2021 |
URL | https://www.embl.de/training/events/2021/DRG21-01/index.html?ct=t%28Nov20_all+virtual+events%29 |
Description | Organisation and participation in 4 science fair events |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Other audiences |
Results and Impact | • Science Spectacular, Manchester Museum, 20 Oct 2018 • Science Uncovered Manchester, Manchester Museum, 28 Sept 2018 • Didsbury SciBar, Manchester, 23 April 2018 • British Science Week, 12-16 March 2018 |
Year(s) Of Engagement Activity | 2008 |
URL | http://www.flyfacility.manchester.ac.uk/forthepublic/outreachactivities/#events |
Description | PLoS blog post |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Prokop, A. (2018c). How to communicate basic research in schools - a case study using Drosophila. Blog post in "PLOS | BLOGS" |
Year(s) Of Engagement Activity | 2018 |
URL | https://tinyurl.com/yazj4yrc |
Description | PLoS blog post |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | Patel, S., Prokop, A. (2018). An objective-driven long-term initiative to communicate fundamental science to various target audiences - a Drosophila case study. Blog post in "PLOS | BLOGS" |
Year(s) Of Engagement Activity | 2018 |
URL | https://tinyurl.com/yd663m45 |
Description | Patel, S and Prokop, A. (2021) "Re-animating school biology lessons through teaching with living flies", submitted REF2021 impact case |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | The outreach activities since 2011 with respect to developing school resources based on our research activities were turned into an impact case for REF2021; successfully submitted. |
Year(s) Of Engagement Activity | 2021 |
Description | Publication of new lesson resource |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | Prokop, A. (2018d). LESSON 6 - Life cycles. Blog post in "droso4schools" |
Year(s) Of Engagement Activity | 2018 |
URL | https://droso4schools.wordpress.com/l6-lifecycle/ |
Description | School engagement events |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Schools |
Results and Impact | • Animal Research Day, FBMH, Manchester University - 17 July 2019 • Animal Research Day, FBMH, Manchester University - 20 March 2019 • British Science Week, University of Manchester -11 to 15 March 2018 • Animal Research Day, FBMH, Manchester University - 12 Dec 2018 • Scarisbrick Hall School, 14 Nov 2018 • St John's RC Primary School, 17 Oct 2018 • Discover Life Sciences Event, FBMH, University of Manchester - 17/18 July 2018 • Manchester University/ Lancashire Schools collaboration, Scarisbrick Hall School -4 July 2018 [Evaluation] • Y10 Work Experience Programme - 28 June 2018 • Manchester Grammar - 27 June 2018 • Brookburn Primary, Manchester - 06 June 2018 • Animal Research Day, FBMH, Manchester University - 29 March 2018 • British Science Week, University of Manchester -13 to 16 March 2018 |
Year(s) Of Engagement Activity | 2018 |
URL | http://www.flyfacility.manchester.ac.uk/forthepublic/teachersandschools/#Visits |
Description | Times Highered Article |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Prokop, A. (2018b). First in fly: Drosophila research and biological discovery, by Stephanie Elizabeth Mohr. In "Times Higher Education", 29 March, pp. 58-9, London |
Year(s) Of Engagement Activity | 2018 |
URL | https://www.timeshighereducation.com/books/review-first-in-fly-stephanie-elizabeth-mohr-harvard-univ... |