Interference Traction Force Microscopy (iTFM) for Bioimaging of Cellular Forces

Lead Research Organisation: University of St Andrews
Department Name: Physics and Astronomy

Abstract

The human body consists of over 100,000 billion individual cells, with each cell being on some level an independent entity. Coordination of this hugely complex system relies on an intricate network of signalling, many aspects of which are still poorly understood. While the involvement of chemical signals (e.g. hormones) in this challenging coordination is widely accepted, there is now rapidly increasing interest in how cells interact with each other and with their environment on the mechanical level, for example by pushing and pulling or by sensing the stiffness or mechanical stress in their local environment. This is motivated by strong evidence that mechanical signalling (known as mechanotransduction) plays a critical role in a number of important processes, ranging from controlling how stem cells differentiate in the growing human embryo to affecting the progression of important diseases. However, while mechanotransduction is therefore obviously both fascinating and important for improving human health, our ability to study mechanics on a cellular level remains limited due to a lack of suitable methods to 'image' the forces that cells or components of cells apply. (Several microscopy methods to investigate cell force have been developed but their application requires special expertise that is often not available in a biology lab and even if this expertise is available it remains very challenging to follow the mechanical behaviour of cells over the extended time periods over which many relevant processes in cell biology occur. In addition, existing methods are not sensitive enough to study the activity of weaker cells.)

In this project, light is used as an optical ruler to accurately and robustly image the force pattern applied by cells. Using an effect known as optical interference, the short wavelength of visible light will facilitate an increase in the sensitivity of force imaging by 5 to 10-fold over existing techniques. In addition, light-waves will provide an internal reference for the new method which means that it will be able to track force patterns over long periods of time (up to several weeks) without a need for disruptive reference measurements which many of the existing methods currently require.

There are many areas of cell biology where the new technique may prove to be highly useful. Due to the short-term nature of this project, it will initially be applied to one specific example: a study of the forces involved in the adhesion of cells normally found in the kidney where they are responsible for blood filtration and thus for removal of waste products from the body. These cells are under constant mechanical pressure and their failure is associated with kidney malfunction. Studying the involved forces therefore promises to improve our functional understanding of the kidney and may in the long-run lead to methods for early detection and treatment of kidney failure, a condition often associated with obesity and diabetes.

Technical Summary

Cell forces play a critical role in many cellular processes and control the development of multi-cellular organisms. For a number of important diseases, loss or change in the mechanical function of cells has been identified as a causal factor. However, the number of cell culture models and processes for which the role of cell forces has been studied remains limited compared to the vast amount of data available from biochemical assays. This is largely due to a lack of bioimaging tools that offer sufficient throughput, mechanical sensitivity and lateral resolution and that provide the non-invasive, stable and reference-free measurements required for long-term studies. For example, an investigation of cell adhesion forces associated with podocyte damage will require quantitative imaging of cell forces for over three weeks. We propose to address this shortcoming by developing a new cell force imaging technology - interference Traction Force Microscopy (iTFM) - that will utilize in-plane interference in elastic optical gratings to map the traction forces exerted by cells. Due to its interference-based measurement principle, iTFM is expected to achieve 5 to 10-fold higher force sensitivity than the best existing methods (which rely on localization microscopy). In addition, the self-referencing nature of iTFM will obviate the zero-force reference measurements required for most existing methods and will thus provide a step-change in throughput and in the ability to perform long-term studies. We envisage that iTFM will enable a wide range of previously impossible or impractical experiments, ranging from sub-cellular to cell sheet level and spanning diverse cell types and time scales. Here we will validate and introduce iTFM by applying it to the measurement of forces exerted by podocytes. In particular, we will carry out long-term investigations of the forces involved during podocyte differentiation and podocyte damage.

Planned Impact

The functional bioimaging technology developed here is relevant for bioscience researchers across different fields of biology and medicine, including in academia, in the pharmaceutical industry (drug screening) and in the healthcare sector (e.g., for pathology, blood work). To maximize the impact of our research, we will follow a combined strategy of (i) academic translation (via broad dissemination, including in high-impact journals, and via academic collaboration with leading cell biology labs world-wide) and (ii) of pursing routes for commercialization of the developed technology (via IP protection and licensing or via a spin-out company).

For most of the omics approaches pursued in research today, commercial assays and screening methods are available. Interestingly, this is not the case for mechanotransduction and specifically not for traction force microscopy. The academic cell biomechanics community has grown rapidly over recent years and has on its own now reached a level where we expect commercialization of a bioimaging tool for traction force mapping to be economically viable. This vision is amplified by the potential to apply mechanical assays in other sectors (pharmaceutical, healthcare). However, existing technology is not particularly amenable to commercialization, mainly because its use requires extensive training and throughput and hence productivity are limited. In addition, for many existing approaches there would not be a clearly defined product. The interference based, self-referenced, highly sensitive yet robust bioimaging approach suggested here, however, has much stronger potential for successful commercialization: iTFM chips are based on storable elastomer materials and could be confected and sold with user-specified stiffness. The hardware required for iTFM readout can be developed as an add-on for existing live cell imaging systems or as a high throughput stand-alone bioimaging station.

To maximize economic and societal impact, we will seek protection of the IP developed in the project. In particular, we expect to protect the iTFM principle itself and several aspects of the process for producing iTFM chips. We will actively approach possible partners for licensing of this IP, through using our existing network and by disseminating our work at meetings with industry participation. Besides licensing, we will also explore commercialization through a university spin-out, which would lead to direct creation of value and jobs.

The interdisciplinary nature of this project and the interdisciplinary environment in St Andrews provide excellent training and will be highly stimulating and inspiring for all involved. This project will have direct impact through the training given to a PDRA. In addition, PhD students working in the investigators' groups will be closely involved in the research in order to maximize their exposure to interdisciplinary research and problem-oriented thinking.
 
Description A particular success of this project has been the application of tools developed in part through the project to study the kidney. Below is a press release issued on this topic:

Ground-breaking research revolutionises treatment of kidney disease
27 JUNE 2018

As cases of chronic kidney disease continue to rise, scientists now have a better understanding of its causes and treatment, thanks to innovative research led by the University of St Andrews.

The new study, published in Science Advances (Wednesday 27 June), has discovered that the glomerular filter, a key component of the functionality of the kidneys, is under substantial hydrostatic mechanical pressure. Kidneys filter waste products from our blood and remove this in the form of urine, via glomerular blood filtration and a group of specialist cells called podocytes. Chronic kidney disease presents with damaged podocytes and a sustained reduction in glomerular filtration rate and is an increasing health burden with limited treatment options.

Mechanical force is crucial to the survival of podocytes. However, podocyte mechanobiology remains poorly understood, largely due to the technical challenges in measuring these forces. Now, an interdisciplinary team from St Andrews have investigated the mechanical forces that podocytes apply when they interact with their underlying substrate.

Dr Paul Reynolds from the School of Medicine, in collaboration with physicist Professor Malte Gather, used a novel force imaging technique, Elastic Resonator Interference Stress Microscopy (ERISM), developed by Professor Gather. Their findings show that injured podocytes experience near-complete loss of cellular force transmission. This loss of force is reversible and as such there is a window of opportunity for recovery from injury.

Dr Reynolds said: "Mechanobiology is an emerging area of research and very relevant to kidney disease. We can show that contractile podocyte forces are transmitted via specific contact points made by cells on their substrate. We also show the significance of the loss of these mechanical forces in podocyte injury.

"Our work paves the way to a new level of understanding of the kidney by describing the mechanobiology of podocytes. These findings will open new avenues of exploration in the treatment of podocyte injury. Our approach also has general applicability to a wide range of biomedical questions involving mechanical forces."

Both Dr Paul Reynolds and Professor Malte Gather are part of the University's Biomedical Sciences Research Complex, a global leader in cutting-edge advances in medical research, fostering interdisciplinary collaboration.
Exploitation Route In the intermediate future we hope to very substantially expand on the findings from the early study on kidney through a more focused research effort in the Physics Life Science Interface scheme.
Mid to long-term our findings may be taken up very widely in fundamental cell biology research, but also in clinical pathology and drug screening and can be used with a variety of cell types and organ models. We are in contact with relevant stakeholders to promote this process.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

URL http://dx.doi.org/10.1126/sciadv.aap8030
 
Title Data underpinning - "Analysis of the Precision, Robustness and Speed of Elastic Resonator Interference Stress Microscopy" 
Description 05.05.2017 St Andrews, Philipp Liehm Requirements: 1. Install the python package Anaconda 2.3 (not tested with other versions, likely to work with newer versions as well) https://www.continuum.io/downloads 2. To run ERISM_Calc_3.0.py you need to have a compiled version of the additional cython package. (cython_all_fit.pyx --> compile -->cython_all_fit.pyd) 3. To compile under WINDOWS you need the setup_normal_win7.py and run from the command line: "python setup_normal_win7.py build_ext --inplace" You may be required to install the free C++ Compiler for Python 2.7: http://aka.ms/vcpython27 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
 
Title Direct measurement of vertical forces shows correlation between mechanical activity and proteolytic ability of invadopodia (dataset) 
Description The data files attached are linked to the publication with title: "Direct measurement of vertical forces shows correlation between mechanical activity and proteolytic ability of invadopodia". The data set contains a zip folder (Figures_OpenData_aax6912) with all the figures of the publication in .tif, .jpg and .png formats. These files can be opened and analysed with ImageJ. There is also a file (Plots and graphs_OpenData_aax6912) with the data needed to generate the plots and graphs of the publication. This file is in .opj format and can be opened using the OriginPro software. 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
URL https://risweb.st-andrews.ac.uk:443/portal/en/datasets/direct-measurement-of-vertical-forces-shows-c...
 
Title Podocyte injury elicits loss and recovery of cellular forces (dataset) 
Description  
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
 
Title The dyslexia susceptibility gene KIAA0319 influences cilia length, cell migration and mechanical cell-substrate interaction (dataset) 
Description  
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://risweb.st-andrews.ac.uk/portal/en/datasets/the-dyslexia-susceptibility-gene-kiaa0319-influen...
 
Title Willin/FRMD6 influences mechanical phenotype and neuronal differentiation in mammalian cells by regulating ERK1/2 activity (dataset) 
Description Willin/FRMD6 is part of a family of proteins with a 4.1 ezrin-radixin-moesin (FERM) domain. It has been identified as an upstream activator of the Hippo pathway and, when aberrant in its expression, is associated with human diseases and disorders. Even though Willin/FRMD6 was originally discovered in the rat sciatic nerve, most studies have focused on its functional roles in cells outside of the nervous system, where Willin/FRMD6 has been shown to be involved in the formation of apical junctional cell-cell complexes and in regulating cell migration. Here, we investigate the biochemical and biophysical role of Willin/FRMD6 in neuronal cells, employing the commonly used SH-SY5Y neuronal model cell system and combining biochemical measurements with Elastic Resonator Interference Stress Micropscopy (ERISM). We present the first direct evidence that Willin/FRMD6 expression influences both the cell mechanical phenotype and neuronal differentiation. By investigating cells with increased and decreased Willin/FRMD6 expression levels, we show that Willin/FRMD6 not only affects proliferation and migration capacity of cells, but also leads to changes in cell morphology and to an enhanced neurite formation. These changes were accompanied by alterations of biophysical parameters such as cell force, the organization of actin stress fibers and the formation of focal adhesions. At the biochemical level, changes in Willin/FRMD6 expression inversely effected the activity of the extracellular signal-regulated kinases (ERK) pathway and downstream transcriptional factor, NeuroD1. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://risweb.st-andrews.ac.uk:443/portal/en/datasets/willinfrmd6-influences-mechanical-phenotype-a...