19-EEID US-UK Anticipating dynamic responses to disease control interventions in reservoirs: the science of vampire bat rabies management

Lead Research Organisation: University of Glasgow
Department Name: College of Medical, Veterinary, Life Sci

Abstract

Wild animals host a wide variety of pathogens that can spread between host species. Such diseases, including Ebola and COVID-19, significantly affect human health, agriculture and wildlife conservation. Historically, disease mitigation methods (e.g. vaccination, therapeutics) have focused on humans or livestock rather than the wild animals that perpetuate the pathogens in nature. For example, we treat humans after they become ill from a disease that originated in other species, rather than limiting the spread of the disease within its animal source. Controlling diseases within wildlife could be more effective in controlling disease but is currently limited by three factors. First, many diseases are maintained in cycles that spread across landscapes, but wildlife are notoriously difficult to observe at these large spatial scales, making responses to interventions unpredictable. Second, tools like vaccines have been difficult to administer to sufficient numbers of individuals to actually reduce disease transmission in the wild. Third, interventions are usually bounded by societal constraints, whether financial (e.g., limited funds to invest) or sociological (e.g., conflicting desires among multiple stakeholders). This project uses a highly tractable disease that has major health and agricultural impacts as a model system to determine how each limiting factor for disease control in wildlife can be overcome.

The project will conduct field and laboratory research to test specific hypotheses about vampire bat-transmitted rabies, a viral infection that has major human health and agricultural impacts across Latin America. The study will take advantage of two areas where novel tools and strategies enable unprecedented insights into disease spread and management: the miniaturization of animal-borne tracking systems and the development of vaccines that can spread among wildlife in the wild. Field experiments using animal-borne GPS tags, along with landscape-scale data on bat presence from questionnaires and historical rabies outbreaks in cattle, will be used to generate a spatially-explicit dynamic model of bat abundance and dispersal. Studies on captive and wild vampire bats will resolve key uncertainties related to the implementation of self-spreading therapies that target bats. Finally, stochastic epidemiological models will use parameters estimated from fieldwork and captive studies and the bat population dynamic model to identify optimal intervention strategies for localized control and regional elimination of vampire bat rabies that preserve diverse stakeholder requirements (e.g. wildlife conservation goals as well as improved human and livestock health).

Broader impacts: This research constitutes a step towards preventative management of an important bat virus while strengthening international research capacity. In doing so, it will create generalizable quantitative frameworks that will be useful to inform how potentially revolutionary technologies could be applied to other wildlife diseases.

Technical Summary

The major goal of this research is to assess ecological mechanisms underlying the success or failure of current and proposed disease control interventions in wildlife reservoirs. We focus on vampire bat (Desmodus rotundus) transmitted rabies, a highly tractable model that also carries substantial applied importance for human and livestock health in Latin America. As with many wildlife zoonoses, the primary limits to evidence-based management of vampire bat rabies are both epidemiological and sociological. We need better understanding of how rabies spreads across heterogeneous landscapes and how interventions can be designed to take advantage of these dynamics. Yet, theoretically optimal solutions must be robust to real world constraints such as limited funding and conflicting needs among stakeholders. In our study, field experiments using animal-borne GPS tags, along with landscape-scale data on bat presence from questionnaires and historical rabies outbreaks in cattle will allow us to generate a spatially explicit dynamic model of bat abundance and dispersal. Studies on captive and wild vampire bats will resolve key uncertainties related to the implementation of self-spreading therapies that target bats. Stochastic epidemiological models will use parameters estimated from fieldwork and captive studies and the bat population dynamic model to identify optimal intervention strategies for localized control and regional elimination that accommodate diverse stakeholder requirements. This study will constitute a major advance towards evidence-based management of an economically damaging zoonosis affecting livestock-reliant countries across Latin America. More broadly, it will forge new theoretical ground to illustrate how the next generation of self-disseminating technologies for wildlife disease control and the next generation of technologies in animal spatial ecology can be quantitatively integrated to improve human and animal health.
 
Description Using sophisticated statistical models, we developed an approach to predict the presence of reclusive animals while accounting for observation biases which tend to plague animal observation datatasets. Applying this model to a dataset on vampire bats from Peru revealed that 76% of vampire bat roosts in southern Peru remain undiscovered and identified hotspots of undetected roosts in currently rabies-free areas, implying high risk for viral incursion. Incorporating the locations of undetected roosts improved spatial predictions of rabies spillover to livestock, revealed areas with disproportionate underreporting to surveillance systems and suggested a higher rabies burden than previously estimated. Our approach is a robust method to infer the distribution of a mostly unobserved bat reservoir which can inform strategies to prevent the re-emergence of an important zoonosis.

Our grant also requires conducting field experiments using animal-borne movement tracking (GPS and RFID technologies) to characterize seasonal and sex-related variation in vampire bat short-range foraging and long-range dispersal, and test how culling alters bat movement ecology. Between 18th April and 10th May 2022, we carried out a pilot of the deployment of GPS tags in vampire bats. The pilot study was carried out at an abandoned house where a colony of vampire bats was roosting in district of Sanayca, Apurimac, Peru. We used tags with 3g, and 3cm body length and 5cm of antenna, which were developed specifically for this project by Pathtrack (Pathtrack Ltd, UK). Fifteen tags were deployed for this pilot. Vampire bats were captured using a mist net placed inside the abandoned house. After the 6 days of the experiment, we had an 80% data recovery rate, meaning that out of 15 bats, we recovered complete data for 12 bats. The findings of this pilot confirmed the application of glue and suturing with absorbable thread to attach the tags, and the position of the receiver some meters away from the roost and in a high point, to successfully download the data from the tags. The absorbable suturing seems to provide the ideal conditions to attach the tags for the study period, without causing any long-term impediment. Results also suggest that after disturbance, most bats return to the roost at some point (which is explained by the high data recovery rate and low bat recapture rate). We are currently analyzing the data from this pilot and studies in 2 other locations to describe the foraging behaviors of vampire bats in our study area. We have also deployed automatic RFID tag readers at 3 bat roosts and will evaluate data records in April.
Exploitation Route Our statistical modelling approach will be useful for a variety of wildlife systems. The code is already public and a manuscript is in review.

Our methods for GPS tracking bats will also be useful for other bat researchers.
Sectors Agriculture, Food and Drink,Environment

 
Description Through winning the Aspire competition (see public outreach section) the findings will be the focus of an exhibit to be installed in the Glasgow Science Centre. This will engage the public with the research process involved in studying bat viruses in the wild while communicating results of the research project, particularly around bat movement ecology and intervention efficacy.
First Year Of Impact 2023
Sector Culture, Heritage, Museums and Collections
Impact Types Cultural

 
Description Building foundations for monitoring viruses at the interface of wildlife and indigenous communities in Peru
Amount £9,501 (GBP)
Funding ID 201698-02 
Organisation University of Glasgow 
Sector Academic/University
Country United Kingdom
Start 10/2022 
End 07/2023
 
Title Code and data for manuscript: Incorporating environmental heterogeneity and observation effort to predict host distribution and viral spillover from a bat reservoir. 
Description This is the source code and data required to reproduce data analysis and figures from the manuscript, "Incorporating environmental heterogeneity and observation effort to predict host distribution and viral spillover from a bat reservoir". 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact Research paper under review 
URL https://zenodo.org/record/7704510
 
Description Collaboration Agreement - University of Wisconsin Madison 
Organisation University of Wisconsin-Madison
Country United States 
Sector Academic/University 
PI Contribution Collaborative planning of field research activities, contributions of expertise, assistance in authorizations.
Collaborator Contribution Collaborative planning of research activiites, technical guidance on remote data collection systems, provisioning of vaccines for experiments.
Impact None to date.
Start Year 2022
 
Description BatsGoViral Team with Glasgow Science Centre's Amplify Competition 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact BatsGoViral Team won Glasgow Science Centre's Amplify competition and will have their MVLS Research Exhibit built and displayed in GSC. They proposed an idea for a research exhibit and were shortlisted to work with GSC designers to design the potential exhibit. Megan Griffiths presented their proposal during the final and the judges chose their exhibit to be built and displayed.
Year(s) Of Engagement Activity 2023
URL https://twitter.com/CVRinfo/status/1633790755528482816
 
Description Ciclo de conferencias por el Día Mundial de Lucha Contra la Rabia 2021 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Annual lecture on the status of rabies in Peru and other countries in the americas
Year(s) Of Engagement Activity 2021
URL https://www.cayetano.edu.pe/cayetano/es/noticias/1074-ciclo-de-conferencias-por-el-dia-mundial-de-lu...
 
Description Conferencia Virtual por el Dia Mundial Contra la Rabia 2021 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Virtual event which brought together international experts in the biology and management of rabies
Year(s) Of Engagement Activity 2021
 
Description Hollie French on Global Science Show 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Hollie chatted with Sam Langford about her work around Vampire Bats in Costa Rica, what her typical day might look like and why she started working in disease surveillance.
Year(s) Of Engagement Activity 2022
URL https://twitter.com/GlobalSciShow/status/1588222061839020033
 
Description Introducing Megan Griffiths (CVR Shorts Publications video): Transmissible vaccines for vampire bat rabies 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact CVR Shorts video discussing Megans PhD project about transmissible vaccines. Part of video series introducing the BatsGoViral project team.
Year(s) Of Engagement Activity 2022
URL https://www.youtube.com/watch?v=84MK-QY1HEQ
 
Description National Geographic bat video 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Video produced by National Geographic on the benefits of bats and their role in emerging viruses.
Year(s) Of Engagement Activity 2021
URL https://www.youtube.com/watch?v=D6e_qh3YRPs
 
Description Pint of Science talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Hollie French gave a talk entitled 'A virus at the door, 'track and trace' for vampires' at the Pint of Science event in Glasgow
Year(s) Of Engagement Activity 2022
 
Description Royal Society profile video 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact One of 3 videos covering the work of Royal Society grantees on COVID-19. The video discussed the ongoing research done under the EEID grant in the context of COVID19.
Year(s) Of Engagement Activity 2021
URL http://www.youtube.com/watch?v=WJQtQ-DXLfY
 
Description Scottish Bat Workers Meeting 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Third sector organisations
Results and Impact One day conference focused on issues related to bat research, conservation and legislation in Scotland. I was one of several invited speakers.
Year(s) Of Engagement Activity 2021
 
Description Ted Radio Hour Instagram Reel 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Daniel Streicker worked with TED Radio Hour at NPR to create a short Instagram video on his research
Year(s) Of Engagement Activity 2023
URL https://www.instagram.com/reel/CpU6P26g892/?utm_source=ig_web_copy_link
 
Description Thomas More International Week 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Undergraduate students
Results and Impact A week long event designed to introduce undergraduate students to the diversity of careers in live sciences.
Year(s) Of Engagement Activity 2021
 
Description United States Department of Agriculture Blue Ribbon Panel on Vampire Bat Surveillance/Rabies Management Strategies 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This expert panel convened by the US National Rabies Management Program (NRMP) and National Wildlife Research Center (NWRC) summarized the state of knowledge around vampire bat rabies to guide the development of a national policy on managing the arrival of vampire bats to the United States of America. Produced a report of recommendations:

Blue Ribbon Panel Final Report: Surveillance, Management and Research of Vampire Bats and Vampire Bat Rabies in the US State of North American Bats, Expert Elicitation Status Assessment (pp.1-41).
Year(s) Of Engagement Activity 2021
 
Description United States Geological Survey National Rapid Risk Assessment for Risk of SARS- CoV-2 to North American Bats 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact This risk assessment used expert surveys and focus groups to evaluate the risk posed by SARS-CoV-2 to North American bats to shape national policies on bat research and management.
Year(s) Of Engagement Activity 2021
URL https://pubs.er.usgs.gov/publication/70219440
 
Description University of Bielefeld 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Departmental seminar for 70 individuals along with a 20 minute discussion afterwards.
Year(s) Of Engagement Activity 2021
 
Description University of Tuebingen 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Departmental seminar to approximately 90 participants from PhD students to professors and a separate question and answer/professional development session for PhD students
Year(s) Of Engagement Activity 2021
 
Description Video series introducing the BatsGoViral team and their research 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Nardus Mollentze explains his work which aims to understand how viruses spread between different host species, and what determines the species they can infect. Haris explains his PhD project which aims to understand how we can use harmless viruses as self-spreading vaccines against #rabies in vampire bat populations.
Year(s) Of Engagement Activity 2022
URL https://youtube.com/playlist?list=PLSIWXqVBfdlDGukbwQVPtypyCN1j2MdrM
 
Description Video series introducing the BatsGoViral team and their research 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Haris explains his PhD project which aims to understand how we can use harmless viruses as self-spreading vaccines against rabies in vampire bat populations
Year(s) Of Engagement Activity 2022
URL https://youtu.be/Qn-ed66xgkI
 
Description XXXII Rabies in the Americas Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact International conference on rabies knowledge and management in the Americas. I gave a keynote presentation.
Year(s) Of Engagement Activity 2021
URL http://rita2021.com.br/index_en.html