Bioconvection: hydrogen production and high concentrations in suspensions of swimming micro-organisms

Lead Research Organisation: University of Glasgow
Department Name: School of Mathematics & Statistics

Abstract

Single celled green algae can be found growing and swimming in most naturally occurring bodies of water on Earth. They are small - 10,000 could fit on a pinhead - and they tend to swim in particular directions, such as towards light or away from gravity, to improve their chances of survival. Indeed, a red form is responsible for the pink sheen that you can sometimes see on melting snow. When they accumulate in upper regions of the fluid, the mostly high density of the cell-rich fluid above less dense fluid can lead to overturning and amazingly intricate self-perpetuating patterns in just tens of seconds. Physicists and mathematicians, including myself, have been studying these so-called bioconvection patterns in dilute suspensions for some years and have come up with ways to predict some aspects of the patterns that occur. One minor aspect of this proposal is to study other statistical properties of the patterns with geometric image processing techniques that I hope to develop using curvature. The system is a great example of how simple rules for individuals can scale up to produce structure many times the individuals' size, and the same methods can be used with other organisms such as bacteria. It turns out that green algae have other tricks up their sleeves. When they are starved of sulphur, a new circuit internal to each cell kicks in to convert spare electrons from photosynthesis together with protons to hydrogen. This would be fantastic news, for it might ultimately provide a pollution-free and competitive source of hydrogen fuel, were it not for the fact that this circuit is extremely sensitive to oxygen, which is another product of photosynthesis. In order to produce hydrogen you also need to starve the culture of oxygen. This works well for a while, as all the oxygen released from photosynthesis gets used up by the respiration circuitry. As well as producing hydrogen, the cells change shape and structure, and thus their behavioural response to the environment, which means that the algae produce different types of large-scale pattern and this in turn effects the amount of photosynthesis and hydrogen that each cell produces. However, after some hours the cells begin to starve and they shut down. Sulphur and oxygen are required to bring the algae back to their original condition. Actually there are fine balances between starving the cells, the patterns produced and hydrogen production. It's reasonable to predict that a better understanding of the system can produce better yields of hydrogen. To understand the whole process we must make mathematical models of each aspect and to glue them together so that they make sense. My recent research papers have concentrated on the patterns produced by dilute suspensions of cells, but I now have a number of strong ideas on how to deal with the range of behaviour from individual cell dynamics to large scale patterns in dilute suspensions, through simple cell-to-cell interactions to very concentrated cultures. In intend to use techniques from probability and the study of fluids and porous structures. I also have set up a laboratory where I can explore mechanisms and test the mathematical theories to make sure that they are fully consistent with reality. The hope is that one day we may have cars fuelled by hydrogen produced in an environmentally friendly way using green algae, but the methods and results produced from this research will undoubtedly have application in many other systems from pharmaceuticals to fisheries.

Publications

10 25 50
 
Description In order to understand suspensions of cells it is expedient to probe the behaviour of individuals. I have worked with several international groups to probe various aspects of swimming cells, culminating in publications on the first measurement of flowfields around single bacteria (Cisneros et al. Phys. Rev. Lett. 2008), with wholly unexpected results due to flagellar interactions, and 3D simulations of swimming bacteria and algae in shear flow (Croze et al. Physical Biol. 2010) to quantify time-averaged behaviour (O'Malley & Bees, Bull. Math. Biol. 2012; winning the international Society for Mathematical Biology's Lee Segel award 2014 for best article co-authored by a student). The measurement of swimming attributes of individuals has been assisted by development of the new method of differential dynamic microscopy (Martinez et al., Biophysical J. 2012).

An exciting project, picked up by Nature Research Highlights, concerns a dual theoretical and experimental investigation of photo-gyro-gravitaxis (directed cell motion due to light, a gravitational-viscous torque balance, and just gravity, respectively) on hydrodynamic instabilities and patterns, called bioconvection (Williams & Bees, J. Experimental Biol. & J. Fluid Mech. 2011). All three taxes are naturally present in algal photo-bioreactors, so it is crucial that we understand how they combine. Whilst the pattern wavelength did not respond to red light, intriguing trends were found as a function of white light intensity, depending critically on the orientation of the illumination. These trends were probed to unravel the mechanisms and contrasted with theoretical predictions of initial wavelengths from three mechanistically distinct models. Recent work develops new curvature and wavelet methods to explore the emergent patterns.

The fact that stressed algae can produce hydrogen gas was an early driver of this research. A series of manuscripts is being prepared for publication on mechanistic descriptions of the key processes with a prediction of a novel optimal strategy for hydrogen production (see Williams & Bees, Biotech. & Bioeng. 2014). Furthermore, there are many interesting questions associated with other products of algae, which are inherently coupled to the swimming behaviour and suspension dynamics. I have been discussing several of these with industry.

An important breakthrough concerning the transport of suspensions of gyrotactic algae was the derivation of exact results for the drift and effective axial diffusion of cells in tubes, which may be of considerable use in industry, in a similar vein to classical Taylor dispersion theory; swimming behaviour can have a tremendous influence on effective diffusion and drift in such systems: cells may drift rapidly along the tube relative to nutrients, due to slow migration normal to the tube axis across streamlines (Bees & Croze Proc. Roy. Soc. A 2010; Bearon et al. Physics of Fluids 2012; Croze et al. J. Roy. Soc. Interface 2013). The framework is sufficiently general that it can be applied to other systems, such as chemotaxis in suspensions of bacteria swimming in flows in microfluidic chambers, or spermatozoa in vivo. The results can be tested experimentally, as in a recently submitted work. I have pursued these theoretical and experimental approaches and further publications are imminent for laminar and turbulent regimes.
Exploitation Route We summarize how our results can be employed by the biofuels industry in the following article:
Martin A Bees, Ottavio A Croze. Mathematics for streamlined biofuel production from unicellular algae. Biofuels. Jan 2014, Vol. 5: 53-65.
Sectors Agriculture, Food and Drink,Chemicals,Energy,Environment,Manufacturing, including Industrial Biotechology,Other

URL http://www-users.york.ac.uk/~mab555/
 
Description We summarize how our results can be employed by the biofuels industry in the following article: Martin A Bees, Ottavio A Croze. Mathematics for streamlined biofuel production from unicellular algae. Biofuels. Jan 2014, Vol. 5: 53-65.
First Year Of Impact 2014
Sector Other
 
Description Carnegie UK Trust
Amount £40,000 (GBP)
Organisation Carnegie Trust 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description The growth of motile algae: from plankton blooms to biofuel production
Amount £95,103 (GBP)
Funding ID EP/J004847/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 09/2012 
End 08/2013