Re-wiring the metabolic regulatory system to promote a healthy ageing trajectory
Lead Research Organisation:
Babraham Institute
Department Name: Epigenetics
Abstract
Ageing is a seemingly inevitable part of life, and yet, a wealth of research has shown that environmental circumstances can drive cells into different ageing trajectories. While caloric restriction increases lifespan and improves ageing health, dissecting these two outcomes, and identifying less severe interventions is now possible as studies have shown that it is altered metabolic states, not minimal energy intake that is driving beneficial outcome. The anti-ageing therapeutics and interventions that exist are marginally successful, and this is likely because we have yet to fully understand what happens when cells age and how this pathology can be minimized. The crux of my research is understanding the metabolic and diet-based drivers that can extend healthspan, the portion of life free of morbidity and pathology, by altering metabolic states without undergoing severe dietary restriction. Recently, the Houseley lab has uncovered a nonrestricted dietary intervention that appears to promote healthy ageing in yeast. In this project, I am exploring the metabolic components underlying this response by examining changes in metabolite flux that drive ageing outcomes. Using the ageing methods pioneered in the Houseley lab, I have discovered a mechanism mediated by AMPK, a central metabolic regulator, that uncouples nutrient-sensing and facilitates rapid turnover of Acetyl-Coenzyme A into lipid metabolism, rather than into age-dependent transcriptional dysregulation. This project will benefit from my experience in metabolic reprogramming, expertise at the Babraham Institute, and a combination of powerful molecular approaches (mass spectrometry, transcriptomics, flow cytometry). This work has the potential to transform our understanding of how ageing pathology arises, provide new leads for developing dietary and pharmacological interventions for healthy ageing, and is an excellent training opportunity that will prepare me for scientific independence.
Publications
Horkai D
(2023)
Dietary change without caloric restriction maintains a youthful profile in ageing yeast
in PLOS Biology
Zylstra A
(2023)
Senescence in yeast is associated with amplified linear fragments of chromosome XII rather than ribosomal DNA circle accumulation.
in PLoS biology
| Description | We investigated whether it was possible to re-engineer budding yeast to acheive lifelong health. We have been successful in doing this, finding a simple set of changes to highly conserved molecular pathways that prevent fitness loss during ageing on a normal diet, but do not extend lifespan. We have determined the mechanism underlying these effects, increasing our understanding of the system. We are now translating our findings into insect and mammalian systems to see if we can extend healthspan for animals on a normal diet. |
| Exploitation Route | In theory, we have identified drug targets that could promote ageing health. We have established a steering group to guide us in assembling a data package that will demonstrate to drug developers that our targets are efficacious in mammalian cells. |
| Sectors | Healthcare |
| Description | Calico - Dan Gottschling |
| Organisation | Calico Life Sciences |
| Country | United States |
| Sector | Private |
| PI Contribution | We are the research lead. |
| Collaborator Contribution | Performed one experiment that we were not in position to do. |
| Impact | None |
| Start Year | 2024 |
| Title | METHODS OF PROMOTING ACETYL COENZYME A-FLUX IN CELLS |
| Description | The present invention relates to a method of promoting and/or increasing acetyl coenzyme A (acetyl-CoA) flux into the lipid synthesis (lipogenesis) and fatty acid oxidation pathways in a cell, comprising increasing the activity of AMP-activating protein kinase (AMPK) while maintaining or increasing acetyl-CoA carboxylase (ACC1) activity in the cell. Also provided are a method of rejuvenating a cell, such as to a younger metabolic state, comprising promoting and/or increasing acetyl coenzyme A (acetyl-coA) flux into the lipid synthesis (lipogenesis) and fatty acid oxidation pathways, a pharmaceutical composition comprising a combination of an activator of AMPK and an inhibitor of ACC1 phosphorylation, and the use of said pharmaceutical composition in the treatment of age-related diseases or disorders. |
| IP Reference | WO2024246536 |
| Protection | Patent / Patent application |
| Year Protection Granted | 2024 |
| Licensed | No |
| Description | Babraham Institute Schools Day |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Schools |
| Results and Impact | "At Schools' Day, students from schools all over Cambridgeshire and beyond gather at the Institute to discover more about our world-leading bioscience research. Led by Institute researchers, secondary and sixth-form students complete hands-on lab projects. Often using equipment not available within schools, Schools' Day aims to enthuse, inspire and motivate students and provide insight into what life is really like in the lab. Schools' Day is for students in Years 10-13. Typically, up to 5 students per school or sixth form may attend, although more places may be offered if capacity allows. There is active outreach done to promote the opportunity to schools and students from areas of high deprivation and an associated travel bursary to enable this targeted audience approach. This event has been running annually for 30 years and received local newspaper (Cambridge Independant) and regional TV news coverage this year (ITV Anglia)" |
| Year(s) Of Engagement Activity | 2024 |
| URL | https://www.babraham.ac.uk/news/2024/03/30th-Institute-schools-day#:~:text=Today%2C%206th%20March%20... |
| Description | Babraham Institute Schools Day |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Schools |
| Results and Impact | "At Schools' Day, students from schools all over Cambridgeshire and beyond gather at the Institute to discover more about our world-leading bioscience research. Led by Institute researchers, secondary and sixth-form students complete hands-on lab projects. Often using equipment not available within schools, Schools' Day aims to enthuse, inspire and motivate students and provide insight into what life is really like in the lab. Schools' Day is for students in Years 10-13. Typically, up to 5 students per school or sixth form may attend, although more places may be offered if capacity allows. There is active outreach done to promote the opportunity to schools and students from areas of high deprivation and an associated travel bursary to enable this targeted audience approach." |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.babraham.ac.uk/blog/SchoolsDay-2023 |
| Description | BioInspire online group talk |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Schools |
| Results and Impact | Online event where 15-18 year olds from traditionally underserved backgrounds were engaged with epigenetic research. Students heard about the use of yeast in research and how epigenetic control can affect expression of genes. They also heard about possible career routes before taking part in a lengthy question and answer session where students explored their understanding and views on some of the potential future impacts of epigenetic research. This event also helped enable students to acheive a Youth STEMM Award which is formally recognised by UCAS and so this engagement had a tangible impact on their university applications. |
| Year(s) Of Engagement Activity | 2024 |
| URL | https://www.babraham.ac.uk/events-galleries/Bioinspire |
| Description | Cambridge Festival - Families Weekend |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | Engaged general public (primarily family groups) with epigenetic principles and research. Activities included hands on pipetting experience and a data analysis activty looking to compare the developmental timelines of various animals from conception through to birth. This activity introduced the epigenetic impacts of altering gene expression on cell specialisation and introduced the idea of a biological 'ageing clock' to audiences. Discussions were had about what this research could mean for the future of health research. |
| Year(s) Of Engagement Activity | 2024 |
| Description | HHM - 6th form conference |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Schools |
| Results and Impact | Further education students present research posters which are judged by researcher staff following conversations around their work. Presentation on research and career journey was given to all students will a Q&A following |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.babraham.ac.uk/events/2022/07/sixth-form-conference-2022-healthy-ageing |
| Description | Research Access Programme student placement |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Undergraduate students |
| Results and Impact | Higher education student carried out 8 week lab based summer placement learning a variety of techniques and data analysis methods. They reported an increase in knowledge, skills, and a broadening of their understanding of careers in science as well as how academic research functions. This programme is run in partnership with the In2Research programme and is only open to students from disadvantaged backgrounds. It aims to increase equitable access to our research and porgrammes for all audiences. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.babraham.ac.uk/research-access-programme |
