Structural biology of the tumour suppressor p53 and its complexes

Lead Research Organisation: MRC Laboratory of Molecular Biology
Department Name: UNLISTED

Abstract

The body has defence mechanisms against cancer that involve a protein called p53. This protein also has important roles in many other biological processes, ranging from fertility to ageing. When p53 receives signals that a cell is becoming cancerous, the protein sets into action a train of events that eventually lead to the cancer cell being destroyed. For cancer cells to survive, the activities of p53 have to be eliminated. About half of human cancers have their p53 being disabled by a mutation, most likely caused by environmental damage or radiation. In many cancers, there are raised levels of proteins that inactivate or destroy p53. Our studies examine the shapes of p53 and the other proteins and how they all fit together. These studies will provide fundamental information for designing new anti-cancer drugs that will protect p53.

Technical Summary

Intrinsically disordered domains are now known to be crucial, functional components of many proteins, especially those involved in cell signalling and regulation of the cell cycle. The presence of disordered regions prevents those proteins being crystallised for structural studies, and so solution of their structures is a major challenge, requiring techniques other than x-ray crystallography. The tumour suppressor p53 is an archetypical example of such a protein, as are its negative regulators MDM2 and MDMX. p53 is inactivated directly by mutation in ~50% of human cancers and its apoptopic pathways impaired in the remainder, often by raised levels of MDM2 and MDMX. We have recently solved the structure of p53 in solution using a combination of state-of-the-art NMR spectroscopy, small-angle-x-ray scattering, other biophysical and structural methods, protein engineering and computation. We now wish to do the same for MDMX and MDM2, and their complexes with p53. We wish to reconstruct the structure of p53 and its complexes in solution in order to understand the relationship between p53s structure and activity and how it is regulated by post-translational modification and interaction with other partner proteins. These studies will provide fundamental information on the control of the cell cycle and aid in the development of novel anti-cancer drugs. We have the necessary preliminary data to ensure that these studies should be successful.

People

ORCID iD

Publications

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Arbely E (2011) Acetylation of lysine 120 of p53 endows DNA-binding specificity at effective physiological salt concentration. in Proceedings of the National Academy of Sciences of the United States of America

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Bauer MR (2016) 2-Sulfonylpyrimidines: Mild alkylating agents with anticancer activity toward p53-compromised cells. in Proceedings of the National Academy of Sciences of the United States of America

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Bista M (2012) Domain-domain interactions in full-length p53 and a specific DNA complex probed by methyl NMR spectroscopy. in Proceedings of the National Academy of Sciences of the United States of America

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Bista M (2013) MDMX contains an autoinhibitory sequence element. in Proceedings of the National Academy of Sciences of the United States of America

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Brandt T (2012) Stability of p53 homologs. in PloS one

 
Description Support for frontier research (ERC) Advanced Grant
Amount € 1,459,538 (EUR)
Funding ID GA 268506 
Organisation European Research Council (ERC) 
Sector Public
Country Belgium
Start 06/2011 
End 07/2017
 
Description Electron Microscopy 
Organisation Center for Cooperative Research in Biosciences (CIC bioGUNE)
Country Spain 
Sector Charity/Non Profit 
PI Contribution We prepared proteins and designed experiments.
Collaborator Contribution They performed electron microscopy experiments and analysed data.
Impact 17620598, 21178074
Start Year 2007
 
Description Mass Spectrometry 
Organisation University of Oxford
Department Department of Chemistry
Country United Kingdom 
Sector Academic/University 
PI Contribution We did the experiments and analysis, with technical assistance from collaborators.
Collaborator Contribution Provided mass spectrometry facilities and intellectual input
Impact 19667193, 19815500, 21457718, 21525412
Start Year 2009
 
Description Single molecule studies 
Organisation Harvard University
Department Department of Biological Chemistry & Molecular Pharmacology (BCMP)
Country United States 
Sector Academic/University 
PI Contribution We provided samples, did experiments and analysed data.
Collaborator Contribution They performed experiments and analysed data.
Impact 18424488, 21178072
Start Year 2008
 
Title COMPOUNDS FOR USE IN STABILIZING P53 MUTANTS 
Description Compounds of formula (I): wherein X is selected from CRX and N; RN1 is selected from H and C1-4 alkyl, which may be substituted by SH or halo; RG1 is selected from H and SH; RC2 is selected from H and optionally substituted C1-7 alkyl; RC3 is selected from H and optionally substituted C1-7 alkyl; Rx is selected from H, OH and NH2; RC4 is selected from: (i) an optionally substituted C3-12 N-containing heterocyclyl; (ii) C(=O)NRN5RN6, where RN5 and RN6 are independently selected from H, optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl or RN5 and RN6 and the nitrogen atom to which they are attached form an optionally substituted N-containing C5-7 heterocyclyl group; (iii) C(=O)ORO1, where RO1 is selected from H, optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl; (iv) C(=O)NHNHSO2RS1, where RS1 is selected from H, optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl; (v) OC(=O)RC8, where RC8 is selected from H, optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl; (vi) OC(=O)NRN7RN8, where RN7 and RN8 are independently selected from H, optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl or RN7 and RN8 and the nitrogen atom to which they are attached form an optionally substituted N-containing C5-7 heterocyclyl group; and (vii) C(=O)CH2NH C(=O)NHNH2, CHC(CN)2, CHC(CN)C(=O)NH2, and carboxy; RC5 is selected from H, OH and NH2; or RC4 and RC5 together with the carbon atoms to which they are bound form an optionally substituted aromatic ring containing either 5 or 6 ring atoms, of formula: where Q represents O, N, or CRQ1=CRQ2, where RQ1 and RQ2 are independently selected from H, OH and NH2; RC6 is selected from H, OH and NH2; and RC7 is selected from optionally substituted C3-12 N-containing heterocyclyl, NHC(=O)RC9, CH2NRN2RN3 and NHC(=S)NHRN4, where RC9 is selected from optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl, RN2 and RN3 are independently selected from H, optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl or RN2 and RN3 and the nitrogen atom to which they are attached form an optionally substituted N-containing C5-7 heterocyclyl group, and RN4 is selected from optionally substituted C1-7 alkyl, optionally substituted C3-20 heterocyclyl and optionally substituted C5-20 aryl, and when RC4 and RC5 are not bound together, RC3 may additionally be selected from OR02, where RO2 is a C1-4 alkyl group, and C(=O)ORO3, where RO3 is a C1-4 alkyl group and RC2 may additionally be selected from halo, for use in stabilising a p53 protein carrying a Y220C mutation. 
IP Reference WO2009136175 
Protection Patent application published
Year Protection Granted 2009
Licensed No
Impact Scientific breakthrough in stabilizing p53 mutants.
 
Description Gave Cornforth lecture at Sussex University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Talk sparked questions and discussion

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Year(s) Of Engagement Activity 2013
 
Description Gave a seminar at Parnas Meeting in Jerusalem 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Discussions

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Year(s) Of Engagement Activity 2013
 
Description Invited Speaker at Protein Evolution Meeting in Stockholm 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Discussions

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Year(s) Of Engagement Activity 2014
 
Description Invited speaker at Sperling Memorial Meeting, Rehovoth 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Discussion/Questions

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Year(s) Of Engagement Activity 2013
 
Description Plenary Lecture at IUBMB, Taiwan 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Discussions

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Year(s) Of Engagement Activity 2014
 
Description Plenary Lecture at Protein Aggregation Meeting in Umea 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Questions and discussions

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Year(s) Of Engagement Activity 2014
 
Description Special Lecture at Trinity College Dublin 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Sparked discussions and questions

N/A
Year(s) Of Engagement Activity 2014
 
Description Spoke at Spetses Summer School 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Discussions

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Year(s) Of Engagement Activity 2013