Investigating the role of SOX9 in liver fibrosis

Lead Research Organisation: University of Manchester
Department Name: Medical and Human Sciences

Abstract

Liver fibrosis is a devastating scarring reaction that results from injury to the liver (e.g. by alcohol or infection). The scarring impairs liver function. The ultimate treatment of liver fibrosis is transplantation. Unfortunately this is limited due to the high numbers of people in need of a transplant. For this reason, identifying effective anti-fibrotic treatments at early stages of disease would be hugely beneficial. To achieve this better understanding of how the scar forms is needed. Although progress has been made in this area, unfortunately there are still no approved anti fibrotic treatments. To tackle this problem, I have identified SOX9 as a core factor responsible for mediating large components of scar formation. It is now essential to determine whether loss of SOX9 can be used as a means of reversing scar formation and ultimately fibrosis in the liver. This project will develop models to test whether loss of Sox9 prevents or ameliorates liver fibrosis and if over-expression of Sox9 worsens or accelerates the disease. In addition, I will discover what other genes lie downstream of SOX9 and integrate these with known signalling pathways important in liver fibrosis to uncover new targets and potential for therapies against liver fibrosis.
Taken together, these experiments are anticipated to prove an important role for Sox9 in organ fibrosis and assist in identifying new pathways of value in the search for new therapies.

Technical Summary

Fibrosis of the liver is characterised by progressive accumulation of ECM proteins and is a major cause of morbidity and mortality in the UK. End-stage liver fibrosis can be treated by liver transplantation, but this is limited by donor numbers. Anti-fibrotic therapies are desperately needed during earlier phases of the disease when the fibrosis is reversible. To achieve this, better mechanistic understanding of liver fibrosis is required. Despite progress in this area, there are still no approved anti fibrotic treatments. To tackle this problem, identifying core factors and their mechanism of action will be highly influential; SOX9 represents one of these factors.
A series of data implicate ectopic expression of the Sry-box transcription factor, SOX9, as important in vitro in hepatic stellate cells and their deposition of extracellular matrix (ECM) characteristic of liver fibrosis. Two pressing challenges are now to test these data in vivo to determine if loss of Sox9 prevents or ameliorates liver fibrosis and if over-expression of Sox9 worsens or accelerates the disease; and to determine the genomic-wide binding of Sox9 to help identify direct genetic targets of Sox9 action and to elucidate the downstream pathways that may facilitate novel therapeutic intervention.
Taken together, these experiments are anticipated to prove an important role for Sox9 in organ fibrosis and assist in identifying new pathways of value in the search for new therapies.

Planned Impact

Liver fibrosis is increasing in incidence and is a major cost to the NHS. It is associated with major morbidity and mortality. Largely, this problem comes from the lack of effective therapies at stages of the disease where the damage is reversible. This makes transplantation the last option and only then for lucky individuals where a donor organ is available. This research project will discover whether loss of the transcription factor SOX9 can ameliorate or reverse fibrosis. It will discover new genes involved in liver fibrosis as downstream targets of SOX9 action and it will place SOX9 in the context of known signalling pathways. All of these steps will increase the likelihood of identifying new candidates for targeted drug development to treat liver fibrosis prior to end-stage disease. Therefore, this work carries substantial health and wealth implications.

Publications

10 25 50
 
Description Chiesi medical grant in Cystic Fibrosis. "Investigating advanced diagnostics for liver related complications in cystic fibrosis".
Amount £25,942 (GBP)
Organisation Chiesi 
Sector Private
Country Italy
Start  
 
Description Dean's Prize for clinical academics: Dr Varinder Athwal
Amount £250,000 (GBP)
Organisation University of Manchester 
Sector Academic/University
Country United Kingdom
Start  
 
Description Guts UK (Charity) Development Grant. Investigating fibrosis pathobiology in cystic fibrosis related liver disease to improve clinical detection and management.
Amount £33,011 (GBP)
Organisation British Society of Gastroenterology 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description Innovate UK, Life Sciences Industrial Strategy Challenge Fund on 'Integrated Diagnostics for Early Detection'. Integrated Diagnostics for the Early Detection of Liver Disease (ID_LIVER)
Amount £2,500,000 (GBP)
Organisation University of Manchester 
Sector Academic/University
Country United Kingdom
Start 08/2020 
End 08/2023
 
Description Interrogating mechanical signals in liver fibrosis for anti-fibrotic therapy; North West England MRC Fellowship in Clinical Pharmacology and Therapeutics
Amount £250,000 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 09/2018 
End 09/2021
 
Description MRC Clinical Training Fellow
Amount £180,000 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 09/2012 
End 09/2014
 
Description Understanding the role of ITGA11 in renal fibrosis to advance diagnostic and therapeutic strategies
Amount £12,612 (GBP)
Organisation Kidneys for Life 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2017 
End 02/2018
 
Description University of Manchester PhD MRC doctoral training account
Amount £80,000 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 09/2012 
End 09/2016
 
Description University of Manchester PhD MRC doctoral training account
Amount £80,000 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 09/2014 
End 09/2018
 
Description Fibrotic mechanisms - Edinburgh 
Organisation University of Edinburgh
Country United Kingdom 
Sector Academic/University 
PI Contribution Intellectual ideas and research planning.
Collaborator Contribution Material distribution.
Impact Manuscript published in Nature Comms 016. Direct collaborator included on current MRC project grant (2017-2020)
Start Year 2013
 
Title Prediction and treatment of progressive fibrosis 
Description The present invention relates to methods of predicting a subject's likelihood of developing progressive fibrosis. The invention also relates to methods of selecting an appropriate treatment regiment for the treatment of fibrosis in a subject. The invention also relates to a method of treating progressive fibrosis in a subject. 
IP Reference GB201507371 
Protection Patent application published
Year Protection Granted 2014
Licensed No
Impact A manuscript is i preparation for high impact publication.
 
Title SOX9 As Target For Fibrosis Therapy 
Description The present invention relates to targeting of expression of the transcription factor SOX9 for treatment of conditions associated with aberrant expression of extracellular matrix (ECM) components resulting from up-regulation of SOX9 such as, for example, expression of collagens and other structural proteins resulting in liver fibrosis. 
IP Reference GB0709506.0 
Protection Patent granted
Year Protection Granted 2007
Licensed No
Impact Additional publications PMID 22488688
 
Title Prediction and treatment of progressive fibrosis 
Description We have discovered a marker to predict individuals who will progress with fibrosis at an early stage of disease. This test has been investigated in one fibrotic aetiology to date and we are actively pursuing additional cohorts and diseases to test this in. Currently in close discussion with our IP department and have had market scoping exercise carried out. Looking at obtaining TSB funding either by generating a spin out company or through industrial partner. 
Type Diagnostic Tool - Non-Imaging
Current Stage Of Development Initial development
Year Development Stage Completed 2013
Development Status Actively seeking support
Impact Patented technology and manuscript in preparation. Potential for company spin-out or up-take from industry. 
 
Description 1st International Conference on Hippo signalling, Oxford. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Lecture on our research where it included mechanotransduction related to YAP-1. New discussion and collaborations.
Year(s) Of Engagement Activity 2016
 
Description BASL 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Invited lecture on work with collaborative discussion to follow.
Year(s) Of Engagement Activity 2017
 
Description Conference (AASLD 2012) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Type Of Presentation Paper Presentation
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact AASLD conference, 9-13th November 2012, Boston, USA.

Understanding the molecular mechanisms of liver fibrosis provides insight into novel biomarkers of disease.

Varinder Athwal, James Pritchett, Emma Harvey, Philip Ireland, Katherine Martin, Grace Dolman, William Irving, Neil Guha, Neil Hanley and Karen Piper Hanley.

Oral presentation of research at international conference.

Developing biomarkers for liver disease is an intense area f research and the talk will have been attended by key individuals across bot academia and industry at the forefront of developing these technologies. Our research will impact on this area.
Year(s) Of Engagement Activity 2012
URL http://www.aasld.org
 
Description Conference (EASL oral-poster 2014) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This was a chosen abstract for a poster oral (and bursary award). There has been intense interest in this work following on from the presentation.

Intense interest in this piece of work - notable by additional talk invites and prizes.
Year(s) Of Engagement Activity 2014
 
Description Conference (EASL poster 2013) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Type Of Presentation Poster Presentation
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact EASL, 24-28th April 2013, Amsterdam.

Understanding integrin signalling during liver fibrosis provides insight into their modulation as a therapeutic strategy to treat the disease

Katherine Martin, James Pritchett, Emma Harvey, Varinder Athwal, Charles Streuli, Neil Hanley and Karen Piper Hanley

Poster presentation

significant interest in integrin signalling in liver disease.
Year(s) Of Engagement Activity 2013
URL http://www.easl.eu
 
Description Conference (poster AASLD 2012) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Type Of Presentation Poster Presentation
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact AASLD, 9-13th November 2012, Boston, USA.

Epimorphin signalling is associated with a quiescent-like HSC phenotype with implications for non invasive assay development in liver fibrosis

James Pritchett, Varinder S Athwal, Emma Harvey, Katherine Martin, Philip Ireland, Alexander Nicolaides, William L Irving, Indra N Guha, Neil A Hanley, Karen Piper Hanley

Significant interest in non invasive markers of disease with good attendance at poster.
Year(s) Of Engagement Activity 2012
URL http://www.aasld.org
 
Description Keystone Fibrosis meeting 2014 - clinical fellow 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Intense discussions following talk and following the paper presented in evening poster session.

Collaborations and increased activity for follow-up discussions.
Year(s) Of Engagement Activity 2014
 
Description Keystone Fibrosis meeting 2014 - postdoc 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk to international audience and evening poster presented on same topic. Intense interest for discussions followed.

Scientific collaboration / interaction.
Year(s) Of Engagement Activity 2014
 
Description Lab visit (University of Manchester) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Type Of Presentation Workshop Facilitator
Geographic Reach Regional
Primary Audience Schools
Results and Impact A level students from across the region invited to take part in a week long educational practical session on medical science. In addition given the opportunity to discuss careers with University based scientists with various backgrounds.

Annual event.
Year(s) Of Engagement Activity 2013
 
Description Manchester Science Week 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? Yes
Type Of Presentation Workshop Facilitator
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact A public event for adults and children with activities to engage the audience in basic science and technology. Allows hands on interaction and discussions with scientists.

Annual event
Year(s) Of Engagement Activity 2011,2012,2013
 
Description North West regional Gastro. Conference 2012 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Discussed broadly following talk - won prize for presentation.

Oral prize.
Year(s) Of Engagement Activity 2012
 
Description North West regional Gastro. Conference 2014 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Exciting discussions after talk and awarded best research paper presented.

Awarded prize for best research paper. Data in preparation for manuscript submission (Dec 2014).
Year(s) Of Engagement Activity 2014
 
Description School visit (Manchester) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Type Of Presentation Workshop Facilitator
Geographic Reach Local
Primary Audience Schools
Results and Impact Researcher in residence - Scientific presentations and discussion to A level students to initiate interest in careers in the general area on science and technology. Also as general educational presentation.

This is an on-going annual event.
Year(s) Of Engagement Activity 2010,2011,2012,2013
 
Description Talk in industry at UCB London 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Invited talk on fibrosis to industry - discussions on developing reagents for use in models.
Year(s) Of Engagement Activity 2017