Leukocyte guidance and gradient interpretation in vivo

Lead Research Organisation: University of Cambridge
Department Name: Physiology Development and Neuroscience

Abstract

Our immune system is designed to protect us from infections. For any immune response to occur, white blood cells (leukocytes) need to exit the blood stream and then navigate within tissues in order to find and eliminate invading microbes. This process absolutely relies on their ability to accurately interpret guidance signals produced within tissues. Any malfunction in this process can be the basis of inflammatory diseases (such as allergy, asthma, arthritis and various conditions ending with the suffix '-itis') or insufficient responses to infection (for example in immuno-compromised patients with leukocyte migration defects, such as 'WHIM syndrome' patients). For this reason, manipulating leukocyte navigation for treating inflammatory diseases is a major biomedical target.
This target has yet to be met, as we still have little understanding of how leukocytes are guided within the body. Although many types of guidance cues have been identified over the past decades, their actual mode of action and interpretation by leukocytes are poorly understood. If we can understand this, we can be in a much better position of designing effective and selective treatments for inflammatory diseases.
I have set up a model system in which we can directly visualize how leukocytes are guided towards infected tissues and dissect the genes and mechanisms that underlie this process. For this I have taken advantage of the zebrafish model, as it is optically transparent, allowing us to easily monitor leukocyte migration, and genetically tractable, allowing us to uncover the underlying genetic mechanisms. Using this unique model system, I have so far discovered that certain guidance cues produced at sites of infection - small proteins called 'chemokines' - need to interact with complex sugars in the tissue environment in order to accurately guide the migration of leukocytes. This has many implications and fundamentally changes our understanding of how chemokines operate. In my proposed plan I intend to elucidate further the mechanism of action of chemokines. We (myself, a research assistant and a team of collaborators with complementary expertise) will investigate how sugars of the tissue environment change the signaling properties of chemokines and how exactly leukocytes process this information into directed movement. We will also expand this approach to other important guidance signals, beyond chemokines. These studies will provide a better understanding of how leukocytes 'read' guidance signals so as to navigate correctly in the body, which can ultimately open new avenues for treating inflammatory diseases.

Technical Summary

Neutrophil migration to sites to infection or injury is a major driving force of inflammation. However, little is known about how neutrophils sense inflammatory guidance cues in vivo. We will address this knowledge gap by exploiting the zebrafish model, which uniquely combines amenability to in vivo imaging and genetic manipulation. In previous work, we identified a zebrafish homologue of a well-known human chemokine, CXCL8. Using a combination of in vivo imaging, quantitative and molecular approaches, we discovered that this chemokine forms tissue-bound gradients by binding extracellular proteoglycans and that neutrophis pursue these gradients in a complex manner by adjusting 'gears'. My objective is to further elucidate neutrophil guidance mechanisms by using and extending the tools I established. First, we will explore how neutrophils interpret chemokine gradients in vivo. For this we will probe intracellular gradient sensing events using appropriate fluorescent probes and high-resolution imaging. This will provide unprecedented insight into the information processing underlying complex neutrophil migration behaviours. Secondly, we will investigate how tissue proteoglycans regulate chemokine signaling and concentration at sites of inflammation. For this we will functionally assess chemokine mutants, as well as identify and genetically perturb candidate proteoglycans. This will illuminate the molecular and environmental requirements for functional gradient formation. Finally, we will explore the bigger picture of neutrophil inflammatory responses and ask how different cues, beyond chemokines, contribute to neutrophil guidance. This will provide insight into the function of poorly understood guidance cues and help obtain a more integrated understanding of neutrophil inflammatory responses. Thus, our studies will provide a better understanding of the molecular mechanisms underlying neutrophil guidance, which may open new avenues for treating inflammatory diseases.

Planned Impact

I anticipate my research project to have a broad impact, beyond academia. The likely beneficiaries are:

Pharmaceutical industry. Chemokines are attractive drug targets due to their diverse functions in cell migration processes as well as their contribution to HIV infection as viral co-receptors. The FDA has already approved a number of molecules targeting chemokines and chemokine receptors in the last 5 years. Despite this success, many chemokine drug trials have met significant hurdles (Viola et al. Ann. Rev. of Pharmacol. and Toxicol. 2008; Schall et al., Nat. Rev. Immunol. 2011). This is due to a general lack of understanding of how chemokines operate in vivo. Our in vivo study of a zebrafish homologue of human CXCL8 (IL-8) and the receptors CXCR1 and CXCR2 may thus have a big long-term impact in the design of chemokine drugs. Our study will provide insight into the molecular and environmental requirements for chemokine gradient formation as well as the signal processes that allow neutrophils to read these gradients in vivo. Any of these aspects of my project can lead to new ideas for drug design. It is also noteworthy that unlike teleost fish (van der Aa et al. 2010, Sarris et al. 2012, Deng et al. 2013), rodents lack homologs of CXCL8 and CXCR1 (the closest equivalent in rodents are the chemokines CXCL1 and CXCL2)(Stadtman et al. Front. Immunol. 2012). Therefore the zebrafish model may prove particularly competitive for studies of CXCL8/CXCR1/CXCR2.
Besides chemokines, we plan to investigate other inflammatory cues, including cannabinoids whose role in inflammation is recognised but remains poorly understood. Pharmaceutical companies (e.g. GSK) are currently investing considerable research in the potential of cannabinoids to be used as immunomodulatory agents. The ease with which we can test chemical inhibitors and assess their effects on neutrophil homeostasis/function in zebrafish can form the basis of collaborations with industry to test candidate drugs and help improve their design. I am aware of funding schemes to establish collaborations with industry (such as the MRC Industry Collaboration Agreement) and plan to pursue such schemes once our project is at a mature enough stage. To this end, I will team up with other zebrafish researchers in the UK and beyond in order to pursue such schemes as a collective effort.

Biotech companies. Our in vivo studies will reveal the physiological characteristics of chemokine gradients and this knowledge can be used to design new in vitro chemotaxis systems that better mimic 'real' gradients. I will be communicating with companies commercialising such systems (e.g. Ibidi GmbH, Germany, 'Thermoscientific', UK and 'Gradientech', Sweden) so as to promote the design of 'haptotactic' gradient systems, which may expand their range of products and competitiveness. Our studies will also benefit companies commercializing image analysis softwares (Bitplane) and microscopy equipment (e.g. Leica, Olympus, Zeiss). I have contributed images in the past to such companies for marketing purposes. Moreover, our experiences and dialogue with these companies will help improve their product design and implementation. Finally, several companies (such as Anaspec, USA) are investing in producing antibodies and recombinant proteins for the growing zebrafish community. I have already contributed to Anaspec's production line by testing their antibodies in zebrafish or contributing gene clones. We will continue to be in contact with Anaspec, as well as other companies specialized in chemokine reagents (Almac, UK), to promote the generation of new antibodies and recombinant proteins.

General public. Inflammatory diseases (such as asthma, allergy and arthritis) are widespread and can be life threatening. By contributing to the understanding of neutrophil migration, a key driving force of inflammation, our studies may ultimately improve the life of an enormous number of people in the UK and beyond.
 
Description Launched a new summer research programme between Trinity College Cambridge - Institut Pasteur Paris
Geographic Reach Europe 
Policy Influence Type Influenced training of practitioners or researchers
Impact The new programme aims to better prepare Trinity College graduates for a career in research and make them more internationally competitive for graduate research programmes. The program does so by increasing their international exposure and providing research experience in a prestigious research institution.
 
Description Participation in Scientific Advisory Board for Chemocentryx (USA)
Geographic Reach North America 
Policy Influence Type Participation in a guidance/advisory committee
URL http://www.chemocentryx.com/
 
Description Churchill Scholarship
Amount £37,900 (GBP)
Organisation The Winston Churchil Foundation of the United States 
Sector Charity/Non Profit
Country United States
Start 10/2016 
End 09/2017
 
Description ERC Consolidator Grant - The uncharted journeys of inflammatory cells and their functional implications
Amount € 2,000,000 (EUR)
Funding ID 101087849 
Organisation European Commission 
Sector Public
Country European Union (EU)
Start  
 
Description Immune cell navigation in vivo: the role of group signalling and tissue geometry
Amount £258,918 (GBP)
Organisation The Leverhulme Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 08/2021 
End 12/2024
 
Description Leukocyte navigation mechanisms in confined physical environments
Amount £19,814 (GBP)
Funding ID 19.23(n) 
Organisation INT 
Start 04/2020 
End 10/2020
 
Description MRC DTP UNIVERSITY OF CAMBRIDGE
Amount £73,362 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 10/2015 
End 09/2018
 
Description MRC Doctoral training programme
Amount £81,300 (GBP)
Funding ID RG86932 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 10/2017 
End 09/2021
 
Description Returning Carers Scheme
Amount £2,800 (GBP)
Organisation University of Cambridge 
Sector Academic/University
Country United Kingdom
Start 02/2017 
End 07/2017
 
Description Royal Society Research Grant
Amount £15,000 (GBP)
Funding ID RG91278 
Organisation The Royal Society 
Sector Charity/Non Profit
Country United Kingdom
Start 11/2017 
End 10/2018
 
Description Spatiotemporal control of inflammation through optogenetics
Amount £9,660 (GBP)
Organisation Physiological Society 
Sector Charity/Non Profit
Country Global
Start 09/2019 
End 01/2021
 
Description WELLCOME TRUST PHD PROGRAM
Amount £152,202 (GBP)
Funding ID 105391/Z/14/A 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2015 
End 09/2018
 
Title Neutrophil motion in numbers: How to analyse complex migration patterns 
Description Review of methods to analyse cell migration patterns by tracking slgorithms. 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2021 
Provided To Others? Yes  
Impact This was published in a special issue for quantitative approaches to study of cell and developmental processes 
URL https://pubmed.ncbi.nlm.nih.gov/34461315/
 
Title Optogenetic control of chemokine secretion 
Description We introduced a versatile technology to control chemokine secretion by light and thus manipulate leukocyte communication in vivo in a spatiotemporally controlled manner. 
Type Of Material Technology assay or reagent 
Provided To Others? No  
Impact This work was published in the journal Blood. I have subsequently been invited to an international conference on GPCRs to specifically talk about this work (Paris, November 2017). 
URL https://www.ncbi.nlm.nih.gov/pubmed/27057000
 
Title Protocols on how to analyse chemokine receptor dynamics in leukocytes 
Description Abstract of paper: Leukocyte guidance by chemical gradients is essential for immune responses. Neutrophils are the first cells to be recruited to sites of tissue damage where they execute crucial antimicrobial functions. Their trafficking to these loci is orchestrated by several inflammatory chemoattractants, including chemokines. At the molecular level, chemoattractant signaling is regulated by the intracellular trafficking of the corresponding receptors. However, it remains unclear how subcellular changes in chemokine receptors affect leukocyte migration dynamics at the cell and tissue level. Here we describe a methodology for live imaging and quantitative analysis of chemokine receptor dynamics in neutrophils during inflammatory responses to tissue damage. These tools have revealed that differential chemokine receptor trafficking in zebrafish neutrophils coordinates neutrophil clustering and dispersal at sites of tissue damage. This has implications for our understanding of how inflammatory responses are self-resolved. The described tools could be used to understand neutrophil migration patterns in a variety of physiological and pathological settings and the methodology could be expanded to other signaling receptors. 
Type Of Material Technology assay or reagent 
Year Produced 2020 
Provided To Others? Yes  
Impact The development of this method allowed us to make key discoveries on how chemical receptor trafficking affects neutrophil migration at sites of tissue damage in vivo, as reported in this publication: https://www.nature.com/articles/s41467-019-13107-3 
URL https://pubmed.ncbi.nlm.nih.gov/33346191/
 
Title Transgenic zebrafish models for analysis of chemokine receptors 
Description Transgenic zebrafish models to visualise chemokine receptor trafficking in single neutrophils 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2019 
Provided To Others? Yes  
Impact The development of this model led to publication of Coombs et al., Nat. Comms 2019 
URL https://www.nature.com/articles/s41467-019-13107-3
 
Title Neutrophil Swarming 
Description The codes underpin analysis included in publication by Poplimont et al., Curr. Biol. 2020. The codes allow automated detection of neutrophil swarm dynamics, which is highly time consuming when performed manually. 
Type Of Material Computer model/algorithm 
Year Produced 2020 
Provided To Others? Yes  
Impact These algorithms contributed to publication by Poplimont et al. 2020 on the mechanisms of neutrophil swarming, which has been received considerable recognition and citations so far. Development of our algorithms and analysis techniques for neutrophil migration also led to subsequent publication of review by Georgantzoglou et al. Cells and Development 2021: 'Neutrophil motion in numbers: how to analyse complex cell migration patterns' 
URL https://github.com/LeukocyteMotionAndDynamics/NeutrophilSwarming
 
Title Receptor Traffic 
Description This is a set of new codes to analyse neutrophil clustering, reverse migration and receptor trafficking 
Type Of Material Data analysis technique 
Year Produced 2019 
Provided To Others? Yes  
Impact The codes underpin analysis included in publication by Coombs et al., Nat. Comms. 2019. One of the codes allows automated detection of reverse migration in conventionally labelled neutrophils. This may reduce the need to generate/breed transgenic animals with neutrophils expressing specialised photoconvertible reporters for tracking of reverse migration. Another code allows automated detection of receptor trafficking in neutrophils in which the receptor is fused to a fluorescent protein without the need to normalise to another membrane marker. This may reduce the need to generate/breed specialised transgenic animals with neutrophils expressing membrane markers or dual cassettes of receptors with membrane markers. 
URL https://github.com/LeukocyteMotionAndDynamics/ReceptorTraffic
 
Description Characterisation of zebrafish inflammatory chemokine receptors 
Organisation University of Bonn
Country Germany 
Sector Academic/University 
PI Contribution We invited Evi Kostenis and two her lab members to assist us in the completion of a manuscript led by our research group describing work we have performed over the past 4 years on chemokine receptor dynamics in leukocytes. Evi Kostenis and two of her lab members were included in the author list of this paper, which was published in 2019.
Collaborator Contribution The research group of Evi Kostenis specialises in the pharmacology and biochemistry of GPCRs. They have corresponding techniques and expertise complementary to ours. They assisted as in completing the publication of Coombs et al. Nat Comms 2019 with the biochemical characterisation of the chemokine receptors Cxcr1 and Cxcr2 in zebrafish. This was a very fruitful and productive collaboration that led to generation of important datasets in the paper and inclusion of two additional contributing authors from her research group.
Impact The research group of Evi Kostenis specialises in the pharmacology and biochemistry of GPCRs. They have corresponding techniques and expertise complementary to ours. They assisted as in completing the publication of Coombs et al. Nat Comms 2019 with the biochemical characterisation of the chemokine receptors Cxcr1 and Cxcr2 in zebrafish. This was a very fruitful and productive collaboration that led to generation of important datasets in the paper and inclusion of two additional contributing authors from her research group.
Start Year 2019
 
Description Immune cell navigation in vivo: the role of group signalling and tissue geometry 
Organisation University of Edinburgh
Department MRC Centre for Regenerative Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution I was the lead applicant of a Leverhulme Trust research grant where I included Linus Schumacher, University of Edinburgh, as co-applicant.
Collaborator Contribution Linus Schumacher's team is providing input from mathematical modelling in this project.
Impact This collaborative project is multi-disciplinary, involving experimental animal biology, biophysics of tissue mechanics and mathematical modelling
Start Year 2021
 
Description Molecular Control of Adhesion-Free Migration 
Organisation University College London
Department MRC Laboratory for Molecular Cell Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution I have agreed to act as a Research Sponsor to a recipient of a Sir Henry Wellcome Postdoctoral Fellowship, Dani Bodor. The main sponsor of the fellow is Ewa Paluch who is based in LMCB (UCL). Part of this project aims to investigate the role of candidate friction-modulating molecules on the migration of neutrophis in vivo, in zebrafish. Dani Bodor will conduct this part of the project in the second half of his fellowship and will be supervised by myself.
Collaborator Contribution Dani Bodor is funded by the Wellcome Trust and the LMCB. The first part of his project will be executed in LMCB where he will study friction-modulating molecules in vitro.
Impact The collaboration has just started and has no outcomes yet.
Start Year 2017
 
Title Algorithms for Analysis of Chemokine Receptor Dynamics and Migration Patterns of Neutrophils 
Description Algorithms for Analysis of Chemokine Receptor Dynamics and Migration Patterns of Neutrophils 
Type Of Technology Software 
Year Produced 2019 
Open Source License? Yes  
Impact These algorithms enabled research reported in Coombs et al. Nature Communications (2019) 
URL https://www.nature.com/articles/s41467-019-13107-3
 
Title Algorithms to analyse neutrophil motion patterns and calcium fluxes during swarming 
Description Algorithms to analyse neutrophil motion patterns and calcium fluxes during swarming from microscopy movies 
Type Of Technology Software 
Year Produced 2020 
Open Source License? Yes  
Impact These algorithms enabled research reported by Poplimont et al. Current Biology 2020 https://doi.org/10.1016/j.cub.2020.05.030 
URL https://doi.org/10.1016/j.cub.2020.05.030
 
Description Cambridge Science Festival 2016 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact My team participated in an exhibition of how we use the zebrafish model to study disease. This included a presentation, demonstrations of zebrafish samples and how we visualise them with microscopy. The presentations and demonstrations sparked a lot of questions.
Year(s) Of Engagement Activity 2016
URL http://www.sciencefestival.cam.ac.uk
 
Description Outreach activity to school teachers 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact Through my affiliation with Trinity College Cambridge, I co-organised an outreach event to engage with school teachers. We invited about 20 biology teachers from schools all over the country, each of which teaches over 300 students per year. Thus the reach of this activity is effectively around 6000/year. The aim was to inform them about the criteria and process of selection for admission to the University of Cambridge so that they have a better sense of how to prepare students. The second aim was to make them aware of the research going on in the University of Cambridge, through a series of research seminars given by faculty, including myself. In this context, I presented research funded by this MRC award. Overall, the teachers found this event extremely helpful and particularly appreciated hearing about the research. They said to us 'we never get a chance to hear primary research talks and this has been very stimulating and inspiring'.
Year(s) Of Engagement Activity 2018
 
Description PARTICIPATION OF PHD STUDENT IN FAMELAB COMPETITION 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact LAB MEMBER (PHD STUDENT) TOOK PART IN THE LOCAL FAMELAB COMPETITION, WHERE HE PRESENTED THE LIFE OF A NEUTROPHIL TO THE GENERAL PUBLIC. THE PRESENTATION RECEIVED POSITIVE REVIEWS AND STIMULATED MANY QUESTIONS.
Year(s) Of Engagement Activity 2016
URL http://www.sciencefestival.cam.ac.uk/2015-cambridge-science-festival/famelab-cambridge-2015