Preparing for a clinical trial of interventions to maintain normal vaginal microbiota for preventing adverse reproductive health outcomes in Africa

Lead Research Organisation: University of Liverpool
Department Name: Institute of Infection and Global Health

Abstract

Human body surfaces are covered by bacteria called the human microbiota. This microbial community is believed to contain at least 10 times the number of cells and 100 times the number of genes in the human body. Considerable progress has been made in characterising the human microbiota in recent years. Researchers have discovered that these microbial communities are needed for proper functioning of the human body, for example to digest complex carbohydrates in the gut and to prevent pathogen invasion. At the same time, imbalances of the normal microbiota have been shown to be associated with a number of diseases.

The human vagina also contains bacterial communities of mostly lactobacilli that are thought to protect women and their foetuses from pathogen invasion. When these bacterial communities are imbalanced, pathogens may enter the uterus, placenta, membranes surrounding the foetus, or abdominal cavity, causing pelvic inflammatory disease, miscarriages, pre-term births, or maternal or neonatal sepsis. These imbalances have also been associated with increased transmission of HIV and other sexually transmitted infections (STIs) between sexual partners and mother-child pairs. Some of the imbalances have been diagnosed in the past (using symptoms reported by the patient and microscopy of vaginal fluid) as bacterial vaginosis (BV). Unfortunately, BV has been notoriously difficult to treat, and even when treated successfully, recurrence rates are high. Because researchers have not been able to prevent BV recurrences during pregnancy, they have also not been able to prevent subsequent poor pregnancy outcomes.

In this development grant, we will develop interventions to maintain normal vaginal microbiota after initially having cured BV. The study participants will be Rwandan women who are at high risk of HIV and other STIs but who are not pregnant. We will ask one group of 15 women to use a vaginal gel (0.75% metronidazole gel) twice per week for 2 months, a second group of 15 women to use a vaginal probiotic tablet called Gynoflor thrice weekly for 2 months, and a third group of 15 women to use a vaginal probiotic capsule called Ecologic Femi thrice weekly for 2 months. Both probiotics contain 'healthy' bacteria called lactobacilli, and Gyneflor also contains a very low dose of oestriol. A further group of 15 women will form the control group. All women in all groups will receive safer sex and family planning counselling as well as individualised counselling on how to integrate the study interventions into their usual vaginal hygiene practices. At the end of the project, we will evaluate whether we were able to maintain healthy vaginal microbiota during the 2-month intervention period as well as the 4 months after cessation of the interventions. We will also evaluate the acceptability and feasibility of these interventions.

A novel aspect of this trial is that we will not only use standard methods to evaluate the vaginal microbiota (i.e. reporting of symptoms and microscopy of vaginal fluid) but also new molecular methods based on the sequencing of bacterial genes. This allows for a holistic and in-depth characterisation of microbial communities.

The results of this trial will be used to plan a larger randomized controlled clinical trial of the most promising intervention(s).

Technical Summary

Women will be screened for BV by Nugent score, vaginal candidiasis, sexually transmitted infections (STIs), and urinary tract infection (UTI) and will be treated as indicated using standard antibiotic therapies. Women whose vaginal microbiota (VMB) are successfully normalised (BV negative by Amsel criteria, and no Trichomonas vaginalis or yeasts on wet mount) are then randomised into four groups (with 17 women per group): - Group 1: Behavioural 'vaginal practices cessation and safer sex' intervention only. - Group 2: Behavioural intervention plus oral metronidazole, 500 mg twice weekly for two months. - Group 3: Behavioural intervention plus Gynophilus LP vaginal tablet, once every four days for two months. - Group 4: Behavioural intervention plus Ecologic Femi vaginal capsule, daily for the first five days followed by thrice weekly for a total of two months. Gynophilus (Biose, Clermont-Ferrand, France) is a vaginal tablet containing only one Lactobacillus species and Ecologic Femi (Winclove, Amsterdam, The Netherlands) is a vaginal capsule containing multiple Lactobacillus species and Bifidobacterium bifidum. Both companies will provide the study products free of charge. All women in all groups will visit the study clinic at screening, enrolment/randomisation (=initiation of interventions), Day 7, Month 1, Month 2 (=termination of interventions) and Month 6. The Day 7 visit was added to evaluate immediate effects of the interventions. We will ask a subgroup of three women per group (N=12 women) to self-sample at home every Monday, Wednesday, and Friday for one menstrual cycle. The samples will either be collected by a study staff member or dropped off by the participant at the study clinic once per week. Nugent scores and Illumina MiSeq sequencing will be done on all approximately 600 vaginal samples to be collected. HIV, STI, UTI and pregnancy testing will be done at screening, Month 6 and when clinically indicated.

Planned Impact

Human body surfaces are covered by bacteria called the human microbiota. This microbial community is believed to contain at least 10 times the number of cells and 100 times the number of genes in the human body. Considerable progress has been made in characterising the human microbiota in recent years. Researchers have discovered that these microbial communities are needed for proper functioning of the human body, for example to digest complex carbohydrates in the gut and to prevent pathogen invasion. At the same time, imbalances of the normal microbiota have been shown to be associated with a number of diseases. The human vagina also contains bacterial communities of mostly lactobacilli that are thought to protect women and their foetuses from pathogen invasion. When these bacterial communities are imbalanced, pathogens may enter the uterus, placenta, membranes surrounding the foetus, or abdominal cavity, causing pelvic inflammatory disease, miscarriages, pre-term births, or maternal or neonatal sepsis. These imbalances have also been associated with increased transmission of HIV and other sexually transmitted infections (STIs) between sexual partners and mother-child pairs. Some of the imbalances have been diagnosed in the past (using symptoms reported by the patient and microscopy of vaginal fluid) as bacterial vaginosis (BV). Unfortunately, BV has been notoriously difficult to treat, and even when treated successfully, recurrence rates are high. Because researchers have not been able to prevent BV recurrences during pregnancy, they have also not been able to prevent subsequent poor pregnancy outcomes. In this development grant, we will develop interventions to maintain normal vaginal microbiota after initially having cured BV. The study participants will be Rwandan women who are at high risk of HIV and other STIs but who are not pregnant. We will ask one group of 17 women to use an oral antibiotic used to treat vaginal infections (metronidazole 500 mg) twice per week for two months, a second group of 17 women to use a vaginal probiotic tablet called Gynophilus LP once every four days for two months, and a third group of 17 women to use a vaginal probiotic capsule called Ecologic Femi once per day for the first five days followed by thrice weekly for a total of two months. Both probiotics contain 'healthy' bacteria called lactobacilli. A further group of 17 women will form the control group. All women in all groups will receive safer sex and family planning counselling as well as individualised counselling on how to integrate the study interventions into their usual vaginal hygiene practices. At the end of the project, we will evaluate whether we were able to maintain healthy vaginal microbiota during the two-month intervention period as well as the four months after cessation of the interventions. We will also evaluate the acceptability and feasibility of these interventions. A novel aspect of this trial is that we will not only use standard methods to evaluate the vaginal microbiota (i.e. reporting of symptoms and microscopy of vaginal fluid) but also new molecular methods based on the sequencing of bacterial genes. This allows for a holistic and in-depth characterisation of microbial communities. The results of this trial will be used to plan a larger randomized controlled clinical trial of the most promising intervention(s).

Publications

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Cohen CR (2020) Randomized Trial of Lactin-V to Prevent Recurrence of Bacterial Vaginosis. Reply. in The New England journal of medicine

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Van De Wijgert JHHM (2020) Pathobionts in the Vaginal Microbiota: Individual Participant Data Meta-Analysis of Three Sequencing Studies. in Frontiers in cellular and infection microbiology

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Verwijs M (2020) Impact of oral metronidazole treatment on the vaginal microbiota and correlates of treatment failure in American Journal of Obstetrics and Gynecology

 
Description Bacterial vaginosis (BV) is associated with HIV acquisition and adverse pregnancy outcomes. Recurrence after metronidazole treatment is high. HIV-negative, non-pregnant Rwandan BV patients were randomised to four groups (n=17/group) after seven-day oral metronidazole treatment: behavioural counseling only (control), or counseling plus intermittent use of oral metronidazole, Ecologic Femi+ vaginal capsule (containing multiple Lactobacillus and one Bifidobacterium species), or Gynophilus LP vaginal tablet (L. rhamnosus 35) for two months. All interventions were safe, and acceptability and adherence were high. Vaginal microbiota assessments at all visits included Nugent scoring of Gram-stained microscopy slides (the current gold standard for BV diagnosis) and 16S rRNA gene qPCR and HiSeq sequencing (which generate more detailed, semi-quantitative data on individual vaginal bacteria). BV (Nugent 7-10) incidence was 10.18 per person-year at risk in the control group, and lower in the metronidazole (1.41/person-year; p=0.004), Ecologic Femi+ (3.58/person-year; p=0.043), and Gynophilus LP groups (5.36/person-year; p=0.220). In mixed effects models adjusted for hormonal contraception/pregnancy, sexual risk-taking, and age, metronidazole and Ecologic Femi+ users, each compared to controls, had higher Lactobacillus and lower BV-anaerobes estimated concentrations and/or relative abundances, and were less likely to have a dysbiotic vaginal microbiota type by sequencing. Inter-individual variability was high and all of these positive effects disappeared soon after intervention cessation. We conclude that Lactobacilli-based vaginal probiotics warrant further development (for example, to improve the extent and length of vaginal colonisation) and evaluation. They are not expected to negatively affect gut microbiota or cause antimicrobial resistance and might therefore be an attractive alternative to antibiotics when frequent and/or longer-term intervention is required.
Exploitation Route This study was funded as a pilot study because the grant reviewers were not convinced that a randomised controlled trial of vaginal products is feasible in high risk Rwandan women. The study team had conducted these types of trials in this study population before and was therefore much more optimistic from the outset. We have now proven that such trials are indeed feasible. Unfortunately, because of the pilot nature of the trial, the sample size was small and statistical power limited. Furthermore, as of 1 May 2020, the European Medicines Agency will consider vaginal probiotics 'medicinal products for human use' instead of medical devices. Many vaginal probiotics that were available on the market (including the two that we evaluated in Rwanda) may no longer available after April 2020 because they do not yet adhere to the more stringent regulatory requirements for medicinal products. The promising results of this pilot trial should therefore be replicated in larger trials that are conducted in accordance with the new regulatory standards. We published recommendations on how best to conduct such trials, based on our experiences with the current trial, which was the first vaginal probiotics trial to incorporate molecular methodology to quantify the impact of the vaginal probiotics on the vaginal microbiome (see outputs). While the main aim of our trial was to evaluate the two vaginal probiotics, we also confirmed that intermittent prophylactic use of metronidazole prevents BV recurrence. That intervention could be included in clinical guidelines, and could be made available to women who have difficult-to-treat recurrent BV.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

URL http://www.nature.com/articles/s41598-020-60671-6
 
Description The two probiotics companies that donated their vaginal probiotics to the trial intend to use the trial results to support continued development of these products as medicinal products for human use. These vaginal probiotics were on the market as 'medical devices' at the time of the study. However, the regulatory landscape for vaginal probiotics has changed considerably. When health claims are made, the US Food and Drug Administration has required human drug approval since 2016, and the European Medicines Authority will follow suit per 1 May 2021 (delayed by one year due to the COVID-19 epidemic). The two probiotics companies will therefore use the results of the Rwanda VMB trial to strengthen the clinical portfolios for their products.
First Year Of Impact 2021
Impact Types Societal,Economic

 
Title Rwanda VMB study 
Description External parties can find the Rwanda VMB study protocol, participant information sheets, and instructions on how to access the database and specimens collected during the study, at the URL mentioned below. This information was also included in the main publications about the study results. 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
Impact We have not yet received any requests for the data or samples so there is no impact yet. 
URL http://datacat.liverpool.ac.uk/id/eprint/943
 
Description Vaginal probiotics companies 
Organisation Probionov
Country France 
Sector Private 
PI Contribution The vaginal probiotics developed by these companies were evaluated in the VMB clinical trial in Rwanda. Little evidence of clinical benefit was available for gynophilus (Biose, formerly Probionov), and no evidence in the case of Ecologic Femi+ (Winclove). Both companies were interested in clinical evaluation of their products but they did not have the expertise and resources to conduct these clinical studies themselves.
Collaborator Contribution Both companies provided vaginal probiotics free of charge for use in the VMB clinical trial in Rwanda.
Impact The collaboration resulted in the scientific publications that are reported under 'publications'.
Start Year 2015
 
Description Vaginal probiotics companies 
Organisation Winclove Probiotics B.V
Country Netherlands 
Sector Charity/Non Profit 
PI Contribution The vaginal probiotics developed by these companies were evaluated in the VMB clinical trial in Rwanda. Little evidence of clinical benefit was available for gynophilus (Biose, formerly Probionov), and no evidence in the case of Ecologic Femi+ (Winclove). Both companies were interested in clinical evaluation of their products but they did not have the expertise and resources to conduct these clinical studies themselves.
Collaborator Contribution Both companies provided vaginal probiotics free of charge for use in the VMB clinical trial in Rwanda.
Impact The collaboration resulted in the scientific publications that are reported under 'publications'.
Start Year 2015
 
Title Vaginal probiotics 
Description We tested the efficacy of two vaginal probiotics (Gynophilus LP and Ecologic Femi) to restore the vaginal microbiota after oral metronidazole treatment for bacterial vaginosis or Trichomonas vaginalis in women at high risk of these infections in Rwanda. The two vaginal probiotics are already available on the European market, but clinical efficacy data are limited. The data of our trial in Rwanda may be used by the companies (Biose and Winclove, respectively) to make clinical claims. 
Type Preventative Intervention - Physical/Biological risk modification
Current Stage Of Development Refinement. Clinical
Year Development Stage Completed 2016
Development Status Under active development/distribution
Clinical Trial? Yes
Impact The primary and tertiary endpoints analyses have been completed but cannot yet be made public. The secondary endpoints analyses are still ongoing. 
URL https://clinicaltrials.gov/show/NCT02459665
 
Description Dissemination meeting at the Rwanda Ministry of Health 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact We organised a workshop at the Rwanda Ministry of Health to present and discuss the results of three studies that we conducted in Rwanda, including the MRC-funded VMB clinical trial, on 5 December 2017. This meeting was chaired by Dr. Zuberi Muvunyi, the Director General for Clinical and Public Health Services of the Ministry of Health. We also had a separate meeting with the Dr. Patrick Ndimubanzi, the State Minister of Public Health and Primary Healthcare, and Drs. Innocent Turate and Gilles Ndayisaba of the Rwanda Biomedical Center, on 7 December 2017. The meetings sparked lively debates about urogenital health in Rwanda. The MRC-funded VMB trial was a pilot study, but despite the small sample size, we showed a statistically significant reduction in bacterial vaginasosis recurrence in women at extremely high risk of urogenital infections (mostly sex workers) with maintenance therapy of metronidazole and one of the two vaginal probiotics (with the other showing a protective trend that did not reach statistical significance). The meeting participants urged us to conduct larger studies with these promising products in women that are more representative of the general population, including pregnant women. The workshop was attended by national media, and Dr. Muvunyi and Marie Michelle Umulisa of Rinda Ubuzima (the research clinic where the studies were conducted) appeared on national television as well as several national newspapers in the evening of 5 December 2017.
Year(s) Of Engagement Activity 2017
URL http://mobile.igihe.com/ubuzima/article/hakozwe-ubushakashatsi-ku-buvuzi-buhabwa-abagore
 
Description Invited talk at the 'Women and Their Microbes' conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Women and Their Microbes is a biannual gathering of scientists, businesses, clinicians, and patients interested in probiotics. This meeting was held in Hamilton, Canada, and also included a seminar and Q&A session with the general public. I presented the results of the Rwanda VMB trial.
Year(s) Of Engagement Activity 2019
URL http://www.womenandtheirmicrobes.com/
 
Description Invited talk at the British HIV Association Autumn Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact I presented an overview of current knowledge of the urogenital tract microbiota and its relationships with HIV infection at BHIVA's annual Autumn meeting. The audience consisted mostly of physicians taking care of HIV patients.
Year(s) Of Engagement Activity 2018
URL https://www.bhiva.org/AutumnConference2018
 
Description Invited talk at the British Society for Microbial Technology Autumn Symposium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact I presented a general talk on urogenital microbiota in women, including pregnancy, to medical technologists from around the UK.
Year(s) Of Engagement Activity 2018
URL https://www.bsmt.org.uk/
 
Description Invited talk at the IUSTI Conference in Dublin 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Oral presentation at an international scientific conference dedicated to sexually transmitted infections (STIs).
Year(s) Of Engagement Activity 2018
URL https://www.iustidublin2018.com/
 
Description Invited talk at the annual meeting of the International Scientific Association for Prebiotics and Probiotics (ISAPP) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Invited talk at the annual ISAPP meeting.
Year(s) Of Engagement Activity 2019
URL https://isappscience.org/for-scientists/annual-meeting/annual-meeting-reports/#toggle-id-1
 
Description Keystone Symposium Cape Town 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I presented the results of the Rwanda VMB trial, primary and molecular outcomes, at a Keystone Symposium on the role of the urogenital microbiota in sexual and reproductive health in Cape Town, South Africa. In addition, I was the chair of this Keystone Symposium.
Year(s) Of Engagement Activity 2018
URL http://www.keystonesymposia.org/index.cfm?e=web.Meeting.Program&meetingid=1660
 
Description Presentation of Rwanda VMB trial results at the University of Liverpool, Institute of Infection and Global Health, annual research day on 14 November 2017 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Prof. van de Wijgert presented the Rwanda VMB trial results at the University of Liverpool, Institute of Infection and Global Health, annual research day on 14 November 2017. The audience consisted of university professors, other university staff, and pre- and post-doctoral students.
Year(s) Of Engagement Activity 2017
 
Description Presentation of the Rwanda VMB Trial results at Winclove Probiotics, Amsterdam, the Netherlands, on 14 December 2017 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact Prof. van de Wijgert presented the Rwanda VMB trial results at Winclove Probiotics, one of the probiotics companies that participated in the trial, on 14 December 2017. The audience consisted of about 15 Winclove Probiotics staff, and was followed by a discussion about the further development of Ecologic Femi+. The European Medicines Authority has recently changed its regulations regarding the registration of probiotics (making them more stringent), and the discussion centered around the requirements for changing the current registration of Ecologic Femi+ as a medical device to registration as a drug for human use.
Year(s) Of Engagement Activity 2017
 
Description Presentation of the Rwanda VMB trial results at an international conference (Beneficial Microbes, Amsterdam, the Netherlands on 9 Oct 2017) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact Prof. van de Wijgert presented preliminary results of the Rwanda VMB trial at the Beneficial Microbes conference, which targets European academics and industry representatives.
Year(s) Of Engagement Activity 2017
URL https://www.beneficialmicrobes2017.org/
 
Description Presentation of the Rwanda VMB trial results at an international conference (Global Engage Microbiome R&D and Business Collaboration Congress: Asia, 5 and 6 March 2018, Singapore) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact Prof. van de Wijgert presented the results of the Rwanda VMB trial at the Global Engage Microbiome R&D and Business Collaboration Congress: Asia on 5 and 6 March 2018 in Singapore. This meeting was mostly attended by industry representatives, but also by academics (mostly from Asia and Australia).
Year(s) Of Engagement Activity 2018
URL http://www.global-engage.com/event/microbiome-asia/