DO ORIENTED DIVISIONS DICTATE FATE DECISIONS IN MAMMARY STEM CELLS?

Lead Research Organisation: University of Southampton
Department Name: Sch of Biological Sciences

Abstract

Breast cancer is the most common cancer in women worldwide. In the UK alone, the number of new cases of breast cancer is estimated at 55,200, and around 11,400 patients die every year. Throughout the world, the disease causes 522,000 deaths every year. It is believed that breast cancer arises from the normal self-renewing mammary (breast) stem cell that drives tissue growth and homeostasis, which is subject to genetic mutations that alter its ability to balance proliferation and differentiation programs. Yet, the mechanisms that regulate the normal functions of breast stem cells and how their dysregulation leads to tumour growth remain ill defined. Thus, a better understanding of the normal biology of breast stem cells is urgently needed to enhance our knowledge of breast cancer, and develop more efficient therapeutic strategies that eradicate their breast cancer stem cell counterparts in an effort to limit the mortality the disease causes.

Here we propose a multi-disciplinary research program, bringing together expertise from Stem Cell research and Physics and Mathematical research to uncover the role a cellular process called oriented cell division plays in the control of normal breast development to work out what goes wrong in breast cancer. Execution of this critical process allows stem cells in many tissues to balance proliferation and differentiation during development in order to generate the myriad of cell types that comprise our body. Oriented cell division is often defective in breast cancer stem cells, so understanding how it normally works in breast stem cells will provide important insight into the biological changes that allow tumours to grow. To achieve this, we plan to use transgenic reporter mouse models and advanced microscopic techniques in order to track the fate of dividing breast stem cells in their native environment and determine their dynamic contribution to the development of the normal breast tissue at a high spatiotemporal resolution. By the same approaches in combination with a gene invalidation strategy, we will investigate the consequences of loss-of-function of kinesin-1 - a key protein that controls the positioning of the mitotic spindle - on the execution of oriented cell division, and determine how this influences breast tissue differentiation and architecture. Ultimately, we aim to develop and implement a mathematical/computational framework involving the use of stochastic models and Bayesian analyses, which will provide the means to validate with high confidence our hypotheses and draw a model explaining how oriented cell division rules the binary choices between proliferation and differentiation made by breast stem cells.

It is our expectation that this work will provide a rigorous evaluation of the precise role oriented cell division plays in regulating breast stem cell ability to build and maintain the normal breast tissue, which will help resolve their identity, dynamics and differentiation potential. The outputs of this project will enhance our understanding of breast cancer, and will give rationale for designing tailored therapeutic strategies that control and restore the normal number and mode of division in breast stem cells. Thus our work will help bring breast cancer stem cell therapy one step closer to reality.

Technical Summary

Adult mammary stem cells drive postnatal gland organogenesis and remodelling, and their self-renewal and fate have direct implications for breast cancer. Their true differentiation potential, however, remains unclear. We recently identified a developmental window during pregnancy where basal cells execute asymmetric cell divisions (ACDs) to achieve unequal partitioning of basal and luminal fate determinants, suggesting that ACDs allow a subset of basal stem cells to manifest bipotency. This project will test this hypothesis by assessing the dynamic relationship between spindle orientation and cell fate decisions in dividing basal cells, and how this translates into alveologenesis. Building on our recent findings establishing KIF5/kinesin-1 as the first plus-end microtubule processive motor controlling spindle orientation and apical polarity, we will determine the consequences of its knockdown in basal cells during pregnancy on the execution of ACDs, and how this impacts on epithelial differentiation and architecture. To this end, we developed a genetic lineage tracing strategy to indelibly mark and follow the fate and dynamics of single mitotic basal cells and their progeny at distinct stages of pregnancy, combined with whole-mount 3D confocal imaging. By this approach, clones arising from a mitotic basal cell can be visualized in their entirety. We will use mathematical modelling to compare the clonal data with predictions from stochastic models for cell fate dynamics, and test the potential causal relationship between mitotic spindle dynamic orientation and cell fate outcomes via Bayesian inference. This unique framework is expected to resolve bipotency in a subset of basal stem cells by establishing oriented divisions as a critical mechanism that rules their fate decisions. Our findings will be important for elucidating the mechanisms controlling the dynamic shifts within the mammary epithelial cell hierarchy, and for understanding how breast cancer arises.

Planned Impact

Our research will result in a significant impact on the following areas:

Academic Research: Our work will help resolve with high confidence the differentiation potential of basal stem cells, by providing quantitative data establishing KIF5/kinesin-1-mediated asymmetric cell divisions (ACDs) as a critical cellular mechanism that allows basal stem cells to manifest bipotency. This will have considerable implications for investigators interested in deciphering the mechanisms that rule the dynamics and fates of mammary stem cells during development, homeostasis and transformation. Furthermore, the cutting-edge "wet science" approaches and mathematical models used in this work offer a rigorous framework for the wider stem cell research community assessing the lineage relationship and stem cell fate in different organs and tissues. Our findings will be disseminated to a wider academic audience through publications in high impact peer-reviewed journals and by presenting the work at national and international conferences.

Healthcare: Although not imminently translatable, our work will provide a rationale for designing future therapeutic strategies that target effectively mitotic breast cancer stem cells to correct their unbalanced cell divisions and fate outcomes. Building on our expertise in 3D organoid cultures we will collaborate with clinical scientists from the closely located Cancer Sciences of the University of Southampton (UoS) to generate patient specific cell cultures for therapeutic purposes and drug discovery by targeting KIF5/kinesin-1 and other mitotic proteins. These will represent cost-effective methods, which will ultimately help increase anti-cancer treatment efficiency, enhance the quality of life and decrease the burden on the National Health Service.

Biotechnology and Pharmaceutical Industry: Our work will enhance our understanding of how unbalance in cell division and fate choices in mammary stem cells can lead to the abnormal cell behaviour and tissue architecture observed in cancer, with considerable implications on drug discovery. Those in biotechnology and pharmaceutical industries looking to develop novel and improved approaches for the treatment of breast cancer will greatly benefit from the outcomes of this study. Knowledge transfer activities with these partners will be actively implemented (e.g. through industry-funded studentships) - this is likely to positively influence these industries and create new jobs to increase UK's competitiveness.

Education: Our work will contribute to building a workforce for the future of stem cell research with unique and highly desirable/marketable skill-sets. This project will train one PDRA and will contribute to the training of a PhD student, as well as undergraduate students who pass through the lab. The results generated during this project will serve as an invaluable tool for research-led teaching activities in the relevant higher education courses for basic scientists and health professionals in the UK and abroad.

The General Public: We are committed to engaging the public with our research to educate and raise awareness of the importance of our current research for understanding breast cancer and for the development of novel therapeutic approaches to combat the disease. We will also be actively involved in various UoS outreach events and implement partnerships with local schools to illustrate the broader impact of our research, to inspire the next generation of young scientists. The UoS has a Public Engagement with Research unit "PERu", with a dedicated team who will assist in identifying activities and events for promoting our research. Through this program, our work will also have an ongoing impact on public awareness, engagement, and debates around the importance of stem cell research for understanding human diseases. We will also use UoS press office and appropriate social media tools to reach the wider public.

Publications

10 25 50
 
Description IfLS Pilot Grant "Multiplex in situ imaging and deep learning to investigate the contribution of abnormal cell divisions to breast tumour heterogeneity"
Amount £10,310 (GBP)
Organisation University of Southampton 
Department Institute for Life Sciences
Sector Academic/University
Country United Kingdom
Start 02/2021 
End 07/2021
 
Description The Royal Society International Exchanges Grant (IES\R3\213207): Investigating the role of oriented cell divisions in mammary epithelial morphogenesis and homeostasis using human organoids
Amount £10,600 (GBP)
Funding ID IES\R3\213207 
Organisation The Royal Society 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2022 
End 03/2024
 
Description Multiplex in situ imaging and deep learning to investigate the contribution of abnormal cell divisions to breast tumour heterogeneity 
Organisation University of Southampton
Department Faculty of Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution This collaboration aims to investigate the relationship between defects in spindle assembly and breast tumour heterogeneity, combining multiplex imaging and deep learning-based segmentation algorithms.
Collaborator Contribution our collaborator allows us to access a cohort of >240 human breast cancer samples and tissue microarrays (TMA). our collaborator is also co-supervising with us the PhD student leading the project.
Impact This collaboration is multidisciplinary bringing together expertise in stem cell research, cancer research and oncology, and physics.
Start Year 2021
 
Description Quantitative imaging of the role of oriented cell divisions in mammary epithelial morphogenesis using 3D organoids 
Organisation University of Leuven
Department VIB-KU Leuven Center for Cancer Biology
Country Belgium 
Sector Public 
PI Contribution in this collaboration, we generated the dataset including confocal z-stacks of 3D cultures derived from primary mammary stem cells, where we investigated the role of oriented cell divisions in mammary epithelial morphogenesis and differentiation. we have quantified the orientation of the mitotic spindle in various culture conditions.
Collaborator Contribution Our collaborator we use one of our generated datasets to apply specific algorithms to quantify the effect of mitotic spindle orientation on epithelial integrity and differentiation, as we cell heterogeneities in different 3D culture conditions.
Impact This collaboration is part of a manuscript being completed to submit for publication in April 2021.
Start Year 2020
 
Description Founder of the New PIs in Cell and Developmental Biology Forum 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The primary goal of the forum is to be a platform for peer support and collaboration, supported by an e-seminar series where talks are organized every two weeks. Our top priority, particularly during COVID19 pandemic, is to offer opportunities for new PIs to give and host talks. Speakers will be encouraged to present unpublished results to promote discussions and collaborations. We advertise through Twitter, where we post a link for each talk. We have also created a Slack (@NewPI_CellDev), which allows us to maintain connections, support each other, and exchange ideas about collaborations and grant proposals... The forum has grown into a diverse international network including over 100 labs, driven by a strong ambition to outlast the pandemic. Our Twitter account @NewPICellDev is also used to promote new PIs research to the wider public, through filmed interviews that we post monthly since January 2021.
Year(s) Of Engagement Activity 2020
URL https://twitter.com/NewPICellDev
 
Description Interview for the Cell Press Journal Cell Stem Cell " 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact In this interview, I introduced my lab and our research. I also discussed how COVID19 has affected our research, and what we did to mitigate the related issues. It was important to raise awareness on the impact of COVID19 on new PIs and their career and research. As Cell Stem Cell is a top-tier journal, it is likely that the audience is very broad.
Year(s) Of Engagement Activity 2021
URL https://www.cell.com/action/showPdf?pii=S1934-5909%2820%2930598-1
 
Description Interview for the Node - The Company of Biologists 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact In this interview, I introduced the New PIs in Cell and Developmental Biology Forum which I founded in May 2020. This forum, which has grown since into a diverse and international network of collaborative developmental biologists and includes over 100 labs from around the globe, was created to be a platform promoting collaborations, networking, and peer support for new PIs in cell and developmental biology. The forum includes an outstanding e-seminar series, which is open to all scientists but also the general public. We advertise the seminars via our @NewPICellDev Twitter account (>700 followers) by posting the link to join the talks. We also use our Twitter account for public engagement by posting short interviews of new PIs describing their research and the impact it has.
Year(s) Of Engagement Activity 2020
URL https://thenode.biologists.com/salah-elias-introduces-a-new-virtual-forum-for-early-pis-in-cell-and-...
 
Description Interview for the journal Development: Transition in development - an interview with Salah Elias 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact During this interview, I talked about my career and my transition to becoming an independent group leader.
Year(s) Of Engagement Activity 2022
URL https://journals.biologists.com/dev/article/149/15/dev201044/276153/Transitions-in-development-an-in...
 
Description Organisation of the The Southampton Cell Biology Forum 2nd Meeting - Stem Cells & Organoids 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact This meeting which focuses on Stem Cells & Organoids aims to foster cross-faculty interdisciplinary collaborations in stem cell research at the University of Southampton by bringing together expertise in cell biology, physics, chemistry and engineering, clinicians, and industry.
Year(s) Of Engagement Activity 2020
URL https://www.eventbrite.co.uk/e/the-southampton-cell-biology-forum-2nd-meeting-stem-cells-organoids-t...